ID EU081018; SV 1; linear; genomic RNA; STD; VRL; 4198 BP. XX AC EU081018; XX DT 02-AUG-2008 (Rel. 96, Created) DT 22-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Cocksfoot mild mosaic virus isolate Scotland, complete genome. XX KW . XX OS Cocksfoot mild mosaic virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Panicovirus. XX RN [1] RP 1-4198 RX DOI; 10.1007/s00705-009-0468-8. RX PUBMED; 19693646. RA Ziegler A., Cowan G., Torrance L.; RT "Comparative sequence analysis and serological and infectivity studies RT indicate that cocksfoot mild mosaic virus is a member of the genus RT Panicovirus"; RL Arch. Virol. 154(9):1545-1549(2009). XX RN [2] RP 1-4198 RA Ziegler A., Cowan G.H., Torrance L.; RT ; RL Submitted (03-AUG-2007) to the INSDC. RL Plant Pathology, Scottish Crop Research Institute, Invergowrie, Dundee, RL Scotland DD2 5DA, UK XX DR MD5; 18b58bc4b0d3824694d3261712570359. DR EuropePMC; PMC3113551; 21645857. XX FH Key Location/Qualifiers FH FT source 1..4198 FT /organism="Cocksfoot mild mosaic virus" FT /host="Phleum pratense (timothy grass)" FT /isolate="Scotland" FT /mol_type="genomic RNA" FT /country="United Kingdom:Scotland" FT /db_xref="taxon:479060" FT CDS 100..2904 FT /codon_start=1 FT /transl_except=(pos:1186..1188,aa:OTHER) FT /product="p106" FT /note="polymerase readthrough" FT /db_xref="GOA:B4XRZ5" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B4XRZ5" FT /protein_id="ABW74550.1" FT /translation="MEFFSSALTRLDSTKAATLDWSKFHALFHLCPRAAYAWLKIQLGS FT SILGDLVSFLSRAARALCYLPVAVQEIARSLCERYNAASARAGDAFFYSRLFDTARANR FT WSYLDDSSPPDMGASTVSWVTKVDPLRLPRRALSTVGAGLALYGGYRTLKFLWNMWKFQ FT RRQDAIHSAKTRTQFLEKEYQEVRACMEEMGRAALRTRMEDCILKDVITPEEKDEEGNV FT VQKEVSQMIIKLYGKFVRQLVALAKVEFNGVPKNTEANQLAVWRFMYRCCEKRGLNALD FT ANRALSSALPLVFLPSTYDHNMAITMTCEDTVQTLQRYRDAFAQKSSLHRLLDNPLSGQ FT AWKEWANTILYGDQATGLHFAKXGGIEKWQGVQCKRTRVRHPRLRCHFKDTDHKVSHIH FT RVAGMGDQYTFGLFNNSAGNLERGLAERVFCVKNPQCVHGLDDEFIPTPQPIPGHFRRL FT NKYRKDIIRHVGRKGPIYYEKFLAYYTGPKLVTYSKAVDSLSEMAVRKEDARLKTFVKA FT EKLNLTLKPDPCPRVIQPRDPRYNVEMGRYLKHIEHPIYAAIDKMFGGKTIFKGMSVEA FT MGHEIHKKMRQFPRPCAIGFDASRFDQHVSVEALRYEHSIYKKIHGYPELLNLLCEWQI FT HNDGTAYAKDGFFKYSVNGCRMNTSLGNCILAALISKDLIDRLGITAALVNNGDDNVLI FT CSVDDEAVVVEHLYSHFLDYGFEVVAEAPKYITEQVEFCQMQPVFDGTQYIMVRNPAVS FT MSKDSHSITPFYTPNTMKKWIRAVGECGLSLTGGIPIKQSYYKCFIRNGADKGKIHTSR FT EFASGFQALSKLSTRKERDISTQSRYSFYLAFGYTPDEQVAMENYFDKLVIDPNFSDSG FT SPARASECLLLQLIPKQPTTHSHKRPNKIAKQPAPQDSTWEPVSLAEVQTLLPLGTTPH FT LQAS" FT CDS 100..1188 FT /codon_start=1 FT /product="p41" FT /note="polymerase" FT /db_xref="UniProtKB/TrEMBL:B4XRZ6" FT /protein_id="ABW74549.1" FT /translation="MEFFSSALTRLDSTKAATLDWSKFHALFHLCPRAAYAWLKIQLGS FT SILGDLVSFLSRAARALCYLPVAVQEIARSLCERYNAASARAGDAFFYSRLFDTARANR FT WSYLDDSSPPDMGASTVSWVTKVDPLRLPRRALSTVGAGLALYGGYRTLKFLWNMWKFQ FT RRQDAIHSAKTRTQFLEKEYQEVRACMEEMGRAALRTRMEDCILKDVITPEEKDEEGNV FT VQKEVSQMIIKLYGKFVRQLVALAKVEFNGVPKNTEANQLAVWRFMYRCCEKRGLNALD FT ANRALSSALPLVFLPSTYDHNMAITMTCEDTVQTLQRYRDAFAQKSSLHRLLDNPLSGQ FT AWKEWANTILYGDQATGLHFAK" FT CDS 2733..2951 FT /codon_start=1 FT /product="p8" FT /note="possible movement protein" FT /db_xref="GOA:B4XRZ7" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:B4XRZ7" FT /protein_id="ABW74551.1" FT /translation="MSTPPTNPQTADDTLAQAPKQDRQATRAARLNVGAGIARRSADAA FT ATRDDTASASFVIIAERVDVTNNFNFG" FT CDS 2954..3136 FT /codon_start=1 FT /product="p6.8" FT /note="possible movement protein" FT /db_xref="GOA:B4XRZ8" FT /db_xref="UniProtKB/TrEMBL:B4XRZ8" FT /protein_id="ABW74552.1" FT /translation="MATGTCHCPDNPFVWPLVTVVLILLIIIVASVTSTGPVIIPPSHN FT TTYHHEKYQNIEVQK" FT CDS 3133..3870 FT /codon_start=1 FT /product="p26" FT /note="coat protein" FT /db_xref="GOA:B4XRZ9" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B4XRZ9" FT /protein_id="ABW74553.1" FT /translation="MNGGNTSNRRGRGKALQRRTNKPPRSRSIERARPLAYGQAVGPSP FT PRTVAYRRGRQVNTQPEIILRITAKTTDNYTTVPIIPALLFDPSTQPGYGGRAQYMAGL FT SQLHSQHEWRRLQFTWIPSCATVTPGNVVLKFFPNYRTPLPTVLEDLMDTSSLTFSPYE FT KHTFSVAGRISGLKYNIGATAFLALSDEDKGDYSIGRLVIGTTSQVSAVSLGIIQMVPD FT VEFSGPVTTPVAPTPAATAAAPA" FT CDS 3137..3535 FT /codon_start=1 FT /product="p15" FT /note="unknown function" FT /db_xref="UniProtKB/TrEMBL:B4XS00" FT /protein_id="ABW74554.1" FT /translation="MEAIPLTEGDVARHYKDGLISLLEVGPSSVLAHWPMAKLWARHPP FT GQWLIDEAGRSIPSRKSYFASLPRRPITTRLCPSYLRSCSTPAHNLDMGDELSIWPVYL FT SSTLNMSGGGCSSPGYPAVPRLHREMWF" XX SQ Sequence 4198 BP; 1086 A; 1185 C; 1053 G; 874 T; 0 other; gggaactcgg caaaattccc gttcgcgtac aacacgcgtg ctcgcggcag gcactcaact 60 tgtgcatcag cggcgctaaa cgtacacagc gtattgccca tggaattctt ctcctccgcc 120 ctcaccaggc tcgacagtac caaggcggca accttggact ggtccaaatt ccatgccctc 180 ttccacctct gcccccgtgc tgcttacgct tggctcaaaa tccaactcgg gtcgtcaatc 240 cttggcgact tggtgtcttt cttgtctcga gctgcacgcg ccctctgcta cctacctgtg 300 gcggttcaag aaatagcccg gtctctatgc gagagataca acgccgccag tgctcgcgct 360 ggggacgcgt tcttctacag ccggctgttc gacactgcta gagccaacag gtggagctac 420 ctagacgaca gtagtccccc cgacatgggc gcctctactg tgtcctgggt caccaaggtg 480 gaccctctga gattgccgcg tcgggcgctc tcaacggtcg gagctgggct agccctttac 540 gggggctaca gaacgctcaa gttcctgtgg aacatgtgga agttccagag aagacaggat 600 gccatccact cggcaaagac ccgcacccaa ttcctggaaa aggaatacca ggaggtccgg 660 gcgtgcatgg aagaaatggg gcgcgctgcc ctacgtaccc ggatggaaga ctgcatcctt 720 aaagacgtca tcactcctga ggaaaaagac gaagaaggga acgtggtaca aaaggaggta 780 tcgcagatga taatcaagct ctacggcaag tttgtgaggc aactcgtcgc cctcgcaaag 840 gttgaattca acggtgttcc aaagaacaca gaagccaacc aacttgcagt ctggaggttc 900 atgtacagat gctgcgagaa gagggggcta aacgccttag acgcgaacag ggccctttcc 960 agcgccctgc cgcttgtatt cctcccctcg acctacgacc acaacatggc cataacgatg 1020 acgtgcgaag acactgtgca gaccctgcaa agatataggg acgcattcgc acagaaaagt 1080 agcctccaca ggctactcga caaccctctc tctgggcagg catggaaaga atgggctaac 1140 accattctat atggagacca ggcaactggt ctccatttcg ccaaataggg gggtatcgaa 1200 aagtggcagg gggtgcagtg taaacgtaca cgcgtccggc accccagact cagatgccac 1260 tttaaagata cggaccacaa agttagccac atacacaggg ttgccgggat gggcgaccag 1320 tacacttttg ggctcttcaa caacagtgcg gggaacttag agcgtgggct cgcagaacgg 1380 gtattttgcg tcaagaatcc gcaatgtgta cacggattgg acgatgaatt cataccaacc 1440 ccacaaccca tcccggggca cttccgtcgc ctcaacaagt accgcaaaga tattataaga 1500 cacgtcggcc gcaagggccc catttactat gagaagttcc tggcttacta cactggcccc 1560 aagctggtga cttatagtaa ggctgttgat tccctctcgg aaatggccgt ccggaaagaa 1620 gacgctcgtc tgaaaacctt tgttaaagcg gaaaaactca acctcaccct taagcctgac 1680 ccctgccccc gcgttatcca accgcgcgac ccgcgctaca atgtggaaat gggtaggtac 1740 ctcaagcaca ttgaacatcc catctacgca gccattgaca agatgtttgg tgggaaaacc 1800 atatttaagg gtatgagcgt ggaagctatg ggacacgaga tccacaagaa aatgcgccaa 1860 tttccaagac catgcgcaat tggattcgat gcttccagat ttgaccaaca cgtttctgtt 1920 gaagcactcc ggtatgagca ctcaatatac aagaaaatac acggatatcc tgaactgttg 1980 aaccttctct gtgaatggca gatccacaac gatggaactg cctatgcaaa agatggcttc 2040 ttcaaatact ccgtgaatgg ttgtagaatg aacacgtccc tcgggaattg tattctggca 2100 gctttgatct caaaggattt gattgatcgg cttggtatca cggccgccct agtcaacaac 2160 ggtgacgaca atgtgctaat ctgctcggtg gatgatgagg cagtggtagt ggagcacttg 2220 tacagtcatt ttttagacta tgggttcgag gtcgtagccg aggcaccgaa atacatcact 2280 gaacaagttg agttttgtca gatgcaacca gttttcgacg ggacgcaata tattatggtc 2340 cggaatcctg cagtcagcat gagtaaagat agtcactcca tcacaccgtt ctacaccccc 2400 aacaccatga agaaatggat ccgggctgta ggcgagtgtg gactttctct caccgggggc 2460 atacccatta aacagtcata ttacaaatgc ttcatcagaa acggcgctga caaggggaag 2520 atacacacta gtagagaatt cgcgagcgga tttcaagcac tctcaaaact ctcgacgcgg 2580 aaggaaagag acatcagtac ccaatcgagg tattccttct accttgcgtt cgggtacact 2640 ccggacgagc aggtggctat ggaaaattac ttcgacaagc tggtgatcga tcccaacttc 2700 tccgactcgg gatctccggc aagagcttcc gaatgtctac tcctccaact aatccccaaa 2760 cagccgacga cacactcgca caagcgccca aacaagatcg ccaagcaacc cgcgccgcaa 2820 gactcaacgt gggagccggt atcgctcgca gaagtgcaga cgctgctgcc actcgggacg 2880 acaccgcatc tgcaagcttc gtgatcatcg cggagagggt ggacgtcact aacaacttca 2940 acttcggata aacctggcta ccggcacttg ccactgccca gacaatccct ttgtctggcc 3000 attggttacg gttgtcctca tccttttaat catcatagtt gctagtgtca ccagcacagg 3060 gcctgtcata attccgccct cacacaacac cacctatcac cacgaaaagt accagaacat 3120 agaggtacag aaatgaatgg aggcaatacc tctaaccgaa ggggacgtgg caaggcatta 3180 caaagacgga ctaataagcc tcctagaagt aggtccatcg agcgtgctcg cccattggcc 3240 tatggccaag ctgtgggccc gtcacccccc cggacagtgg cttatcgacg aggccggcag 3300 gtcaataccc agccggaaat catacttcgc atcactgcca agacgaccga taactacacg 3360 actgtgccca tcatacctgc gctcttgttc gaccccagca cacaacctgg atatggggga 3420 cgagctcagt atatggccgg tttatctcag ctccactctc aacatgagtg gaggcggttg 3480 cagttcacct ggatacccag ctgtgccacg gttacaccgg gaaatgtggt tctaaagttc 3540 ttcccgaact acaggacccc tcttcccaca gtgctcgagg atcttatgga cacctcgtcc 3600 ttgaccttca gcccatatga gaagcacacc ttttcggtgg ctggacgcat tagtggccta 3660 aaatacaaca tcggggccac tgcgtttctt gcactatccg atgaagacaa aggcgactat 3720 agcatcggaa ggctcgtcat cggaacgacg agtcaagtgt cggcggtctc cctaggtatc 3780 atacaaatgg tacccgacgt ggaattctca ggaccggtca ccactcccgt ggcaccgaca 3840 cccgccgcta ctgcggctgc gccagcctaa cctcctaggc tatacgaggt tagagtcgac 3900 ctgttaaaca gactcacctc gggcacgcgc tgaaagtgcc cgttggaagg attgcgatgg 3960 gccagtattc ctactgtacc agagaacgtg tcatcagggg atgaccatgt ccaccttgcc 4020 gggtgccctc ggacctatgt ccgtgacatg gcgtgacgct agtaatggtg ctatggaaga 4080 aacacctaac cctccaagca aaaccccaca ggaaactgtg ggggggcggc tatggaggga 4140 ttcgccaatc tcatctgaga agattggggt acctccatga gaggacccac ccccgccc 4198 //