Dbfetch
ID EU024678; SV 1; linear; genomic RNA; STD; VRL; 5808 BP. XX AC EU024678; XX DT 04-JUN-2008 (Rel. 96, Created) DT 04-JUN-2008 (Rel. 96, Last updated, Version 1) XX DE Rose spring dwarf-associated virus, complete genome. XX KW . XX OS Rose spring dwarf-associated virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5808 RX DOI; 10.1016/j.virol.2008.01.035. RX PUBMED; 18329064. RA Salem N.M., Miller W.A., Rowhani A., Golino D.A., Moyne A.L., Falk B.W.; RT "Rose spring dwarf-associated virus has RNA structural and gene-expression RT features like those of Barley yellow dwarf virus"; RL Virology 375(2):354-360(2008). XX RN [2] RP 1-5808 RA Salem N.M., Miller W.A., Rowhani A., Golino D.A., Moyne A.-L., Falk B.W.; RT ; RL Submitted (10-JUL-2007) to the INSDC. RL Plant Pathology and Microbiology, University of California Riverside, 900 RL University Avenue, Riverside, CA 92521, USA XX DR MD5; b4fc6e4ac675b9ed87c74a25e7312ed5. DR EuropePMC; PMC3159437; 21525127. DR EuropePMC; PMC4324725; 18329064. XX FH Key Location/Qualifiers FH FT source 1..5808 FT /organism="Rose spring dwarf-associated virus" FT /lab_host="rose" FT /isolate="California" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:474454" FT CDS join(187..1308,1308..2891) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1-P2 fusion FT protein" FT /note="product derived from -1 ribosomal frameshift" FT /db_xref="GOA:B3FHB8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B3FHB8" FT /protein_id="ABV89765.1" FT /translation="MLLFEGLLTASARVVKDFISYIYSRLKSVYYSLKRWLWTLQGKFQ FT PHDAFVAMVYGYMDDVEDFEVPLALEYEVTERELKEAQDELNRLESKLRFTSFNPWVNL FT VKKTFTREVAPEPFWPVPSRPDCDDPCISSPLIEDEEEVSGPEPEPIFSQQKLDERLCM FT EARMDVLNSEVKFDKVRERINIVYQEVRGARPFGKIFNTMHQRMKHVGKCLKRRSEASA FT RSVEFEKRVNAKTDIADFHSLCEVEEVETGEFHPVKQDADGEDLPRLPKIEVVRRIKDN FT CHRPAATWIREYVRCKNSQLSADEVSHATITRYVEQFCEKNKMDMDSRVFLMQRALLMV FT PIPKPIDIDIAMTVHSPAARELRSIVDTAASSVFLNGLCRVPGFESPFTILGYPGIVIR FT DGARPRKTSSYISYVSQVALGLNYQVPNPSLHNALVAVERRVFTVGKGDKIELPPQPKS FT EIFQRLAYFAEGVIRHSGYCKTHSPLELAMSYESGKRALYLKAVRSLQSSPVNANDAKV FT TAFLKMEKHLMCKPIAPRLICPRSKRYNVELGRRLKFNEKRIMRAIDAMFESPTILSGY FT DSFRVGRIVAAKWGKFRDPVAIGVDASRFDQHVSRQALKFEHSVYNGIFCDPILKKLLK FT WQLRNEVVLFVEDKMLQFTIDRMRMSGDINTSMGNKIIMTGLMHLYFRDLGVQAELCNN FT GDDCVIICDKKDQRKFDNLAAWFLDFGFSMAIEDPVYELEKLEFCQGHPLCINGSYRMV FT RKPESMSKDAHSMLSMKHHEDVKTFLSATAQCGLVLNSGVPILEAFHRCLYRTSGYKKV FT SEGLIKKVISYGQDERLGGRRAIREEPVTMGNRMSFWKAYGVDPRTQVLVERYFDNLTV FT NIELRGVKNLTPLLQSILVGVPDFPDFSQI" FT CDS 187..1311 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1" FT /note="ORF1" FT /db_xref="GOA:B3FHB9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B3FHB9" FT /protein_id="ABV89766.1" FT /translation="MLLFEGLLTASARVVKDFISYIYSRLKSVYYSLKRWLWTLQGKFQ FT PHDAFVAMVYGYMDDVEDFEVPLALEYEVTERELKEAQDELNRLESKLRFTSFNPWVNL FT VKKTFTREVAPEPFWPVPSRPDCDDPCISSPLIEDEEEVSGPEPEPIFSQQKLDERLCM FT EARMDVLNSEVKFDKVRERINIVYQEVRGARPFGKIFNTMHQRMKHVGKCLKRRSEASA FT RSVEFEKRVNAKTDIADFHSLCEVEEVETGEFHPVKQDADGEDLPRLPKIEVVRRIKDN FT CHRPAATWIREYVRCKNSQLSADEVSHATITRYVEQFCEKNKMDMDSRVFLMQRALLMV FT PIPKPIDIDIAMTVHSPAARELRSIVDTAASSVF" FT CDS 3006..5048 FT /codon_start=1 FT /transl_except=(pos:3666..3668,aa:OTHER) FT /product="aphid transmission protein P5" FT /note="translated from subgenomic RNA1 as a fusion protein FT via read-through of the coat protein (P3) stop codon" FT /db_xref="GOA:B3FHC0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B3FHC0" FT /protein_id="ABV89767.1" FT /translation="MSTVVVRQQARNNSRRNGQAQQAQGRSRQPNKARPVVVQVQPSRN FT GRRPRRRGGRRSSRRRGSRMASSRSHWEDYKFTINNLKASDAGVVKFGPSISQCSALKS FT GIFKSFHEFKITNLNVKYITHAASTTSGAFAVEVDTSCTQTTLKSYLQTVPVAKCGQFS FT WPAGKIRGTGWLPTPDPDKTPVDKDNQFFLLYAGNGPSSVAGQFVITARCWFQSPREXR FT DAAPAPSPSPPSPTPAPTPAPTPQPERFFVYAGVPGVDIQTRETDDSIIVGRLNSERLR FT YVEDEQQTLVDIRADWYSNNSVEAVPMLLFDLEEGSWSVDAECQGYQAVTAVGGSEDSN FT WLGFIAYNNANGATWNVGEYNNVKITKLLNTSSWKKGHKDVVLNGCHFNDGQIIERDST FT MSFHCEVGHGGGTILLVAPPVCKSDKYNYVVSYGEYTTKHMEFGSIAICFDEKNDGARA FT GKFLGAPFPRAGHVVREQQTEIARFPAGSDVPIVKISDNDFATSTQPAAHILPVPSSVQ FT LPDDPVSKKVRSWIENSSEDLRLAREAEQTDSDWEPLPPPAPPPGPRQLPTDTSGATQA FT IRNQILRDHTQPYSGPGTPPVFDDIEDTRSTTRTESSRRSFLSGVLRPQLKPKSNLRPT FT SSLPRKLTADQEARVKAVRESFGSAAAKRLRDEFLEGKVSPDQIY" FT CDS 3006..3668 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occassional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:B3FHC1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3FHC1" FT /protein_id="ABV89768.1" FT /translation="MSTVVVRQQARNNSRRNGQAQQAQGRSRQPNKARPVVVQVQPSRN FT GRRPRRRGGRRSSRRRGSRMASSRSHWEDYKFTINNLKASDAGVVKFGPSISQCSALKS FT GIFKSFHEFKITNLNVKYITHAASTTSGAFAVEVDTSCTQTTLKSYLQTVPVAKCGQFS FT WPAGKIRGTGWLPTPDPDKTPVDKDNQFFLLYAGNGPSSVAGQFVITARCWFQSPRE" FT CDS 3055..3615 FT /codon_start=1 FT /product="movement protein P4" FT /note="ORF4; translated via leaky scanning on subgenomic FT RNA1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B3FHC2" FT /protein_id="ABV89769.1" FT /translation="MAKLNKHKDDPGSLTRLAQWLFKSNRPETDEGPDEEEVDARVDVV FT EAEWPHHEATGKITSSQSTTLRRPTPGSLNLVPVYHSVLHSRVEFSSPSMNLRSQTSTS FT STSPMRPQLLPVRSQLKSILPVPKQLLRATSRQSLLQNVDNSPGPPGRFVELDGCQHRI FT PTKRQLTRTTNSFSSMQEMDPAR" FT CDS 5051..5176 FT /codon_start=1 FT /product="P6 protein" FT /note="ORF6" FT /db_xref="GOA:B3FHC3" FT /db_xref="UniProtKB/TrEMBL:B3FHC3" FT /protein_id="ABV89770.1" FT /translation="MSYMYYHSWTIVDTIVILTLCLVLVFLLFVLHFLRRRWSQF" FT CDS 5239..5337 FT /codon_start=1 FT /product="P7 protein" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:B3FHC4" FT /protein_id="ABV89771.1" FT /translation="MLVVSSGGLVNLRRITCVPPLDNNPFLHQTKN" FT CDS 5654..5776 FT /codon_start=1 FT /product="P8 protein" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:B3FHC5" FT /protein_id="ABV89772.1" FT /translation="MSNQPLPLSSHLATPDTNVKGGLVNVSIHPRALPSQKGVF" XX SQ Sequence 5808 BP; 1465 A; 1412 C; 1402 G; 1529 T; 0 other; agtaaaggct gacaccctta caaaagtatt ctttttctta agattgcaga gtgattttcc 60 tcctttctta agaaactgaa tctctggccg gctgttttgt gatcagttcc caggcttcta 120 acaactgtca aacatcgtac acttccacct ttcactccac ccttctgcag cctcttgacc 180 aacaggatgt tgctcttcga aggcttatta accgcctccg cccgtgttgt aaaagatttc 240 atttcataca tttacagccg tctcaaatct gtatattatt ccttgaagag atggctgtgg 300 acgttacagg ggaaatttca gccccatgat gcatttgtcg ccatggtcta cggatacatg 360 gatgacgtgg aagacttcga ggtgcctctt gccctcgagt atgaggtcac tgagcgggag 420 ctcaaagaag cccaggacga gcttaatcgc cttgagagta aactgaggtt tacttctttt 480 aatccttggg taaatctggt caagaagacc ttcacccgcg aagtggcacc tgagcccttc 540 tggcctgttc cgtctcggcc cgactgtgac gatccctgca tatctagtcc tctgattgaa 600 gatgaagagg aagtgtctgg gcctgagccg gaaccaatct tttcccagca aaagctggat 660 gaacgacttt gtatggaagc gaggatggat gtcctcaatt ccgaggttaa gttcgacaaa 720 gtcagagagc ggatcaacat tgtttaccaa gaggtccgtg gtgctcgccc atttggcaaa 780 attttcaaca ccatgcatca gagaatgaag catgtgggta agtgcctgaa gaggcgctct 840 gaagcctcag ctcgatctgt tgagtttgaa aagcgagtca acgctaaaac tgacattgcc 900 gacttccact ctttatgtga ggtcgaggag gtggagacgg gtgagtttca cccagtcaag 960 caggatgccg acggcgagga cttgcctagg ctgcccaaga tagaagttgt ccggagaatt 1020 aaggataact gtcacagacc tgccgccacc tggatcagag aatatgtgcg gtgcaagaac 1080 agccaactct ctgcagatga agtctctcat gccaccatta caaggtatgt ggagcaattc 1140 tgcgagaaaa acaagatgga catggattcc cgtgtcttct taatgcaaag agcactcctc 1200 atggtcccaa tccccaagcc cattgatata gacatagcaa tgactgtcca ctcacccgca 1260 gcaagagagt tgcggtctat tgtggacacc gccgcttcgt cggtttttta aatgggctct 1320 gtcgcgtacc aggatttgaa tcccccttta ctattttggg gtatcctggt atcgtgatac 1380 gtgacggggc acgtcctagg aagactagta gttatattag ttatgttagt caggtagccc 1440 taggtttaaa ttatcaagtt cctaatcctt cactgcataa tgctcttgtt gcagtggagc 1500 gtcgtgtgtt caccgtgggc aaaggtgaca aaattgagct cccccctcaa cccaagtctg 1560 agatcttcca gcgcttggca tacttcgcgg agggggtgat caggcattct gggtactgca 1620 agacccattc tccccttgaa cttgctatgt cttacgagtc tggcaagagg gcgctttacc 1680 tgaaagctgt ccgttctctt cagtcttcac ctgttaatgc aaatgatgcc aaggtgactg 1740 cctttctgaa gatggagaaa catttgatgt gcaagcctat tgcacctcgc ctgatctgcc 1800 ctcgctccaa gaggtacaat gttgagctgg ggaggcgtct gaaattcaac gaaaaacgca 1860 tcatgcgtgc aattgacgcc atgtttgaaa gtcccacaat tctttccggt tacgatagtt 1920 ttagagtagg taggatagtg gctgcgaagt ggggtaagtt tcgtgacccc gttgctattg 1980 gagtagacgc cagtcgtttc gaccagcatg tctctcgaca agctttgaag tttgaacata 2040 gtgtttacaa tgggatcttc tgtgatccta ttcttaagaa acttctcaag tggcaactca 2100 gaaatgaggt tgtccttttt gtcgaagata agatgctaca gtttaccatc gatcgaatgc 2160 gaatgtctgg tgacatcaat acttcaatgg gcaacaagat aatcatgaca ggactcatgc 2220 atttgtactt ccgagatttg ggagtccagg ctgagctgtg caacaatggg gatgattgcg 2280 tgattatctg tgacaagaag gaccagcgta aatttgataa tcttgccgct tggtttttgg 2340 attttgggtt ttccatggct attgaagatc cagtttacga actggagaag cttgagttct 2400 gccagggaca tccactgtgc atcaacggca gttacaggat ggtccgcaaa cccgagagca 2460 tgtctaaaga cgcgcactct atgcttagca tgaaacacca cgaggatgtc aagacattcc 2520 tcagtgccac ggcacaatgt ggtctcgttc ttaactctgg ggtaccgatc ctggaggcgt 2580 tccataggtg cttataccgt acttctgggt acaagaaagt ctctgagggt ttgataaaga 2640 aggtgatcag ttatggtcaa gatgagcgac tcggtggcag gcgtgccatt cgcgaggaac 2700 cagtaactat gggaaatagg atgagtttct ggaaagctta cggagttgac ccgagaacac 2760 aggtccttgt cgaacgatat ttcgacaatt tgacggtcaa tatcgaactc cgcggtgtaa 2820 agaacttgac acctctttta caaagcattc ttgtgggagt ccctgacttc cctgatttca 2880 gccaaatata gattataaac tattagcagg ttattgctta ggttttattt catcagtacc 2940 actaactata ggcttgtctt acttagctta ccttagaatt agcttacagg tccgtaaaat 3000 cattaatgag tacggtcgtg gtgagacaac aggctcgcaa caactctaga cgcaatggcc 3060 aagctcaaca agcacaagga cgatccaggc agcctaacaa ggctcgccca gtggttgttc 3120 aagtccaacc gtcccgaaac ggacgaaggc cccgacgaag aggaggtcga cgctcgagtc 3180 gacgtcgtgg aagcagaatg gcctcatcac gaagccactg ggaagattac aagttcacaa 3240 tcaacaacct taaggcgtcc gacgccgggg tcgttaaatt tggtcccagt atatcacagt 3300 gttctgcact caagagtgga attttcaagt ccttccatga atttaagatc acaaacctca 3360 acgtcaagta catcacccat gcggcctcaa ctacttccgg tgcgttcgca gttgaagtcg 3420 atacttcctg tacccaaaca actcttaaga gctacctcca gacagtccct gttgcaaaat 3480 gtggacaatt ctcctggccc gccgggaaga ttcgtggaac tggatggttg ccaacaccgg 3540 atcccgacaa aacgccagtt gacaaggaca accaattctt tctcctctat gcaggaaatg 3600 gacccagctc ggtagcgggt cagtttgtca tcactgcgcg ttgctggttt cagagtcccc 3660 gtgaatgacg ggacgctgct cctgccccat ccccatcacc tccttctccg acacctgctc 3720 ctactcctgc accaacacct cagccagaaa gattctttgt ctatgctggc gtccctggcg 3780 ttgacattca aactcgtgag accgatgaca gcattattgt tggtcggttg aactctgaac 3840 gtctacggta tgttgaggat gaacaacaaa ctcttgttga catacgtgct gactggtact 3900 cgaacaactc agttgaggcc gtccctatgt tactattcga ccttgaagaa gggtcgtggt 3960 ctgttgatgc ggagtgtcaa ggatatcaag cagttactgc tgtcggtggt agtgaggata 4020 gcaattggct tggttttatc gcatacaata atgcaaatgg cgccacctgg aatgtaggtg 4080 agtacaacaa tgttaaaatc acaaaacttc tcaacacctc ttcttggaag aaggggcata 4140 aagacgttgt gctcaacggt tgccatttta atgacggtca aatcattgaa cgcgattcaa 4200 ccatgtcgtt ccactgtgaa gtgggacatg gcggaggtac aatcctcctg gttgctcccc 4260 ctgtttgtaa aagtgacaag tacaactatg ttgtctctta cggcgagtat accaccaaac 4320 acatggagtt tgggtccatt gctatatgtt ttgatgagaa gaatgatgga gcaagagcag 4380 ggaaattctt gggcgctcct ttcccccgtg caggtcacgt ggtgcgtgag caacaaacag 4440 aaattgcccg atttccagca ggtagcgacg tcccgattgt aaagatcagt gacaatgact 4500 ttgctacctc tacacaacca gctgcacata ttctccctgt tccttcatct gttcaacttc 4560 ctgacgatcc tgtctctaag aaggtgcgat cttggatcga gaattcgagc gaggatttgc 4620 gcctggcgcg tgaagctgaa cagactgaca gcgactggga accccttcca ccacctgcac 4680 cccctcctgg acccaggcaa ttgcccaccg acacctcagg tgccactcag gctatccgca 4740 accagatcct gcgtgatcat acgcagccct actctggccc tggtactccg cccgtcttcg 4800 atgatattga ggatacgagg tcaaccaccc gtactgaaag ttcgcggcgg agttttctca 4860 gtggtgtcct cagaccccag ctcaaaccaa agagtaattt gcgtccgact tcctctctcc 4920 cgcgtaagct aactgctgac caggaggcac gagtgaaggc tgtgcgcgag tcttttgggt 4980 ctgccgctgc taaacgtctt agagacgagt ttcttgaggg gaaggtcagt cccgatcaga 5040 tctactgacc atgtcgtaca tgtattacca ctcctggacc attgtagata caatagttat 5100 attaactctc tgtttggttt tggtttttct tctttttgtt ttgcattttc tgcgtcgcag 5160 atggagccaa ttctaggctt cgcagtgctg gatcctggta aacaggcgtt caagtaacct 5220 aagcttcggt gaagggcaat gcttgttgta agctcgggag gtcttgtcaa cctccgtcgt 5280 atcacctgcg tacctcccct ggataataac ccatttctgc accagactaa aaattaaata 5340 tttgcaaatc acggttttgt ttcacggcaa aacccaaaac ataagtaaga tgggcctaac 5400 tagccctgtg gagaggctac cccttgaata agggtagtgg ttgcacgtct tggcccgaca 5460 gattccggcc gaccatgctt ctgtggtata cactgcacca gtaagacctg gtttaacaaa 5520 actttatcct acccacgatg agatgagtgg gcggcgtaaa ctttgtggaa ttttacagag 5580 aaatctgtaa ttctgcacat gtttgcgaga ggggtctcca gtaccccttt atagaaataa 5640 gcgcttcttt gggatgtcta atcaacctct cccactgagc tcgcatctgg cgactcccga 5700 cactaatgtg aagggaggtt tggtgaatgt tagtattcac cctagggctc ttcctagtca 5760 aaagggggta ttttgactgg agccaccgaa aggcagtgct ccacaccc 5808 //