ID EU000535; SV 1; linear; genomic RNA; STD; VRL; 5682 BP. XX AC EU000535; XX DT 01-JUN-2008 (Rel. 96, Created) DT 01-JUN-2008 (Rel. 96, Last updated, Version 1) XX DE Cucurbit aphid-borne yellows virus, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5682 RX DOI; 10.1007/s00705-008-0083-0. RX PUBMED; 18414972. RA Xiang H.Y., Shang Q.X., Han C.G., Li D.W., Yu J.L.; RT "Complete sequence analysis reveals two distinct poleroviruses infecting RT cucurbits in China"; RL Arch. Virol. 153(6):1155-1160(2008). XX RN [2] RP 1-5682 RA Han C.; RT ; RL Submitted (25-JUN-2007) to the INSDC. RL Plant Pathology, China Agricultural University, Yuanmingyuan West Rd., RL Haidian District, Beijing 100094, China XX DR MD5; bca2341f9e28be35a0698ab27d84764b. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. DR EuropePMC; PMC5712577; 29238357. DR EuropePMC; PMC6368653; 30746518. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5682 FT /organism="Cucurbit aphid-borne yellows virus" FT /host="Cucurbit" FT /mol_type="genomic RNA" FT /country="China:Beijing" FT /db_xref="taxon:91753" FT 5'UTR 1..20 FT CDS 21..740 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:B3FGT8" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:B3FGT8" FT /protein_id="ABV55641.1" FT /translation="MQIESVQQQLTFRPTRRASTEDRRLNTAHFLINHVFFWAQNGSET FT LFRLFLARLPLLISEQLSGDYVYTPGASKRIILARFHRHCGAPLPSSSAVDLRLPTTKD FT VARFFLARHYSRIMGERLQRNQTSLFRGYAEFAKFINVWCSSVSRRLRESAPRDFSSNR FT VFVELSHLGDSLRDLVFISGVHNRDAYARVALHVHRIYGEDGGLDFWRLANLPSKSWPF FT NDARYLEGSVVQKILQR" FT CDS join(142..1488,1488..3311) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:B3FGT9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:B3FGT9" FT /protein_id="ABV55642.1" FT /translation="MEAKHFSAFFLLAFLCSSVSSYQGTMFIPLEPVNASYWLDSTAIA FT VPPSPHQVQLIYDCPPQKMLRDFSSRDITQELWGRGYNETRRAFLEAMQNLQNLLMSGV FT RQFRAGLESLLHVIFQAIAYLWSSLIWATACATWYLFREYTIEMLTLASLYMSTVYMVK FT MAAWIFGDLPIFLLKAGLSTMRGISKALWFRRSYNAEKSVEGFLSFKIPQSPPKHSVLQ FT IQYKDGSHAGYATCVKLYNGTNGLLTAYHVAVPGSKIVSTRNGNKIPLSEFRSIMESEK FT RDLVLLAGPPNWEGTLACKAVHFQDAQSLCKSKATFYAYDGEEWTSSNADIVGIAQGKT FT HASVLSNTDAGHSGTPYFNGVTVLGVHVGGAKEENANYMAPIPGIYGITSPSYEFESSA FT PQGRLFSQEEIDDLIEEFSFSEITSIMGHRRWHQMHDSQRHQADYKYESGKRAGGRDRR FT NNRTKCHPRGWAHKWRRTVSCCSLFPEGQHVHTSEQKGKPHCFCSIPHHQCFYRHFVGN FT QTSHNGQNRCPFDREAGGSSPGEPSHEETKAAQTRQEKFEKLTADFSCFFDAQYIWEQG FT GEEAPGFDKVGSLPKFYYAKQKKSSNWGNKICKQHPEMGDLTKGFGWPQFGAEAELKSL FT RLQAARWLERAQSVKIPSREERERVIERCCRAYQAAKTNGPMVTRGDRLSWDNFLQDFK FT QAVLSLEKDAGIGVPYIAYGRPTHRGWVEDKQLLPILARLTFNRLQKMLEVRHDDLSPA FT ELVQEGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALW FT RVVPSKPGFGLSTDEQVVEFMQILSAQVGLTPSELITEWRAHMIATDCSGFDWSVSDWL FT LEDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSDGTLLAQRVPGVQKSGSYNTS FT SSNSRIRVMAAYHCGAEWAIAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFEK FT EDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFSILNELRSDPFLVDTLHQWLV FT LPVQPQKI" FT CDS 142..2037 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:B3FGU0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:B3FGU0" FT /protein_id="ABV55644.1" FT /translation="MEAKHFSAFFLLAFLCSSVSSYQGTMFIPLEPVNASYWLDSTAIA FT VPPSPHQVQLIYDCPPQKMLRDFSSRDITQELWGRGYNETRRAFLEAMQNLQNLLMSGV FT RQFRAGLESLLHVIFQAIAYLWSSLIWATACATWYLFREYTIEMLTLASLYMSTVYMVK FT MAAWIFGDLPIFLLKAGLSTMRGISKALWFRRSYNAEKSVEGFLSFKIPQSPPKHSVLQ FT IQYKDGSHAGYATCVKLYNGTNGLLTAYHVAVPGSKIVSTRNGNKIPLSEFRSIMESEK FT RDLVLLAGPPNWEGTLACKAVHFQDAQSLCKSKATFYAYDGEEWTSSNADIVGIAQGKT FT HASVLSNTDAGHSGTPYFNGVTVLGVHVGGAKEENANYMAPIPGIYGITSPSYEFESSA FT PQGRLFSQEEIDDLIEEFSFSEITSIMGHRRWHQMHDSQRHQADYKYESGNGQAAATAE FT TTAPNATPAAGRTSGDAQSPVAPSSPKVNTYTPPNKRESRTASAVSPTTSASTDTLSEI FT KQAIMDKIDVHSIEKQVVQALANQAMKKPKPRKRGKRSSKNSQQTSPVSSTPSTSGNRA FT GKKPQDSTKSDPSPSFTTLNRRKARIGETKSANSTQKWVISQRASGGPSSARKLN" FT misc_feature 3312..3510 FT /note="intergenic non-coding region (NCR)" FT CDS 3511..5517 FT /codon_start=1 FT /transl_except=(pos:4108..4110,aa:OTHER) FT /product="read-through protein P5" FT /db_xref="GOA:B3FGU1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B3FGU1" FT /protein_id="ABV55646.1" FT /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPSRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAAKQINGLEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPKXVDGSSPPPPSPSPTPPPPPPPQ FT PQPQPCAQRFWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSR FT NDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGN FT YKGCKIKNYQSNTTFVAGHPDATMNSKSFDSARAVEVDWYASFELECDDEEGSWAIYPP FT PIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNNGNAPRRIPRKGAMAWSTPEPSFS FT GDESQRQDFKTPSPEERGSDALESEEMKEEENLLDRFEEENIPDVDDEDIWKGISRGSE FT SGTAEDDRASTSSRLRGNLKPRGLPKPQPTRTITQFNPNPDLVEAWRPDLAPEYSKADV FT AAATVIAGGSIHEGRDMLRRRDEKVMDSRKKWGVLSSASSLTSGSLRKLSAQSEKLAKL FT TTGERTEYERIKNSHGKTVAAEYLEMVLADKTS" FT CDS 3511..4110 FT /codon_start=1 FT /product="coat protein" FT /note="CP; P3" FT /db_xref="GOA:B3FGU2" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B3FGU2" FT /protein_id="ABV55643.1" FT /translation="MNTAVARNQNAGRRRRRNQRSIRRDRVVVVNPSGGPSRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAAKQINGLEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3539..4114 FT /codon_start=1 FT /product="movement protein" FT /note="MP; P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B3FGU3" FT /protein_id="ABV55645.1" FT /translation="MQGGGGEEISALYGATAWLWSTPLGDHHAEDDNEETADALIEEAE FT LEEGAQAKHSYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRAPSLMSWTPTASLAPSNPRLISLESPRMDCDVGQLSRSTGWNGMTQLRTNSR FT SSTKGTDLPRLQAASGSPSSARSKTRNR" FT 3'UTR 5518..5682 XX SQ Sequence 5682 BP; 1561 A; 1428 C; 1422 G; 1271 T; 0 other; acaaaagata cgagcgggtg atgcaaattg agtctgttca gcaacaacta acattcagac 60 caacccgacg cgcgagcaca gaagatcgaa ggttaaacac agcacacttt ctgatcaacc 120 acgttttctt ttgggcgcaa aatggaagcg aaacactttt ccgccttttt cttgctcgcc 180 ttcctctgct catcagtgag cagctatcag gggactatgt ttatacccct ggagccagta 240 aacgcatcat actggctcga ttccaccgcc attgcggtgc ccccctcccc tcatcaagtg 300 cagttgattt acgactgccc accacaaaag atgttgcgcg atttttcctc gcgcgacatt 360 actcaagaat tatgggggag aggctacaac gaaaccagac gagccttttt agaggctatg 420 cagaatttgc aaaatttatt aatgtctggt gttcgtcagt ttcgcgcagg cttagagagt 480 ctgctccacg tgatttttca agcaatcgcg tatttgtgga gctctctcat ttgggcgaca 540 gcctgcgcga cttggtattt atttcgggag tacacaatcg agatgcttac gctcgcgtcg 600 ctttacatgt ccaccgtata tatggtgaag atggcggctt ggatttttgg cgacttgcca 660 atcttccttc taaaagctgg cctttcaacg atgcgaggta tctcgaaggc tctgtggttc 720 agaagatctt acaacgctga gaaatccgtc gaaggattcc tctcattcaa aataccacag 780 agccctccca aacactcggt tttgcagatt caatataaag atggatctca tgccgggtat 840 gctacctgcg tgaagcttta caatggaaca aatgggcttc tgactgccta tcacgtggca 900 gtcccaggta gcaaaatcgt ctccaccagg aatggaaaca agatcccact ctctgagttc 960 agatcaatca tggaatctga aaagagggat cttgtgcttt tggctggacc ccccaactgg 1020 gagggtactc tagcctgcaa agcagtccac ttccaagatg cccaaagtct ttgcaaatca 1080 aaagcaacct tctacgctta tgacggagaa gagtggactt catccaatgc cgacatagtc 1140 ggcattgcgc agggcaaaac ccacgcctca gtgttaagta acacagacgc gggtcatagt 1200 ggcactccat acttcaatgg cgtaactgtc ttgggtgtcc acgttggtgg ggcaaaagaa 1260 gaaaatgcca attatatggc cccgatacct ggaatctatg gtatcactag cccaagttat 1320 gaatttgagt cctcggcacc ccaaggacgc ctgttttcac aggaagaaat agacgatctc 1380 attgaagaat tctctttcag tgagataaca tccatcatgg ggcatcgccg atggcaccaa 1440 atgcacgact cgcagcgaca tcaagctgat tacaagtacg agtcgggaaa cgggcaggcg 1500 gccgcgaccg ccgaaacaac cgcaccaaat gccacccccg cggctgggcg cacaagtgga 1560 gacgcacagt ctcctgttgc tccctcttcc ccgaaggtca acacgtacac acctccgaac 1620 aaaagggaaa gccgcactgc ttctgcagta tcccccacca ccagtgcttc taccgacact 1680 ttgtcggaaa tcaaacaagc cataatggac aaaatcgatg tccattcgat agagaagcag 1740 gtggttcaag ccctggcgaa ccaagccatg aagaaaccaa agccgcgcaa acgcggcaag 1800 agaagttcga aaaactcaca gcagacttct cctgtttctt cgacgcccag tacatctggg 1860 aacagggcgg ggaagaagcc ccaggattcg acaaagtcgg atccctcccc aagttttact 1920 acgctaaaca gaagaaaagc tcgaattggg gaaacaaaat ctgcaaacag cacccagaaa 1980 tgggtgatct cacaaagggc ttcgggtggc cccagttcgg cgcggaagct gaactgaaat 2040 cgctgcggct gcaagccgcg cgttggctgg aacgtgccca gtcagttaaa atcccctcac 2100 gtgaggagcg ggagcgcgtt atagagagat gctgtcgggc gtatcaagca gctaaaacaa 2160 atggcccgat ggttacgaga ggagatcgac tttcctggga caacttccta caggatttta 2220 aacaggcggt tctctcgtta gaaaaggacg caggtatagg agttccgtat atagcttatg 2280 gcagaccgac ccaccgagga tgggttgagg ataagcaact cctaccgata ttggctcgtc 2340 tcaccttcaa ccggttacag aagatgttgg aggtaaggca tgatgacttg tcgcctgcag 2400 agcttgtgca agagggtctc tgtgacccta ttcgagtgtt tgtaaaagga gaaccgcata 2460 agcagtccaa attagatgaa ggccgctacc gcctcatcat gagcgtctct ctagtcgacc 2520 aattggtagc ccgggtttta tttcaaaatc aaaacaagcg cgagatagca ctgtggagag 2580 tggttccctc caaacccggt tttggcttgt ccacggatga gcaagtggtg gagttcatgc 2640 agattctctc cgcccaagtt gggctaacgc cttcggaatt aatcaccgag tggcgagccc 2700 acatgatagc aactgactgc tccggtttcg actggagtgt ttcggactgg cttcttgaag 2760 atgatatgga agtccgaaac cgcctgacgc tagatttgaa cgaaaccacg cgccgattac 2820 gagcagcatg gttacattgc atatcaaaca gcgtcctctg cctttctgat ggaacattat 2880 tagcgcagag agtcccaggc gtgcagaaga gtggcagcta caatacgtca tcgagcaatt 2940 ctcgcatccg ggtgatggct gcctaccact gcggcgcaga atgggcaata gcgatgggcg 3000 atgacgctct ggagtcagct tgctcgaacc tcgagcgtta taaatcgctc ggtttcaaag 3060 tcgaggagtc ctcaaaactg gaattctgtt ctcacatttt tgagaaagag gacctcgcca 3120 ttccggtcaa caaggccaaa atgctttaca agctcataca tgggtatgaa ccggaatgcg 3180 gcaacgtgga agtgctgatc aattacctgg ccgcctgttt ctcaattctg aatgagttgc 3240 ggtccgatcc tttccttgtc gacactctcc accagtggct ggtccttcca gtgcagccac 3300 aaaagatata aggggagtat aaagaacact agccaagcat acacgagttg caagcattgg 3360 aagtataagt ctcgttacta agagtccaca caatagatta caaatttctc gcaggatttt 3420 ctagcggtct attgtctgca gtgccagtta cggtaatagg actctatttt gtctacctaa 3480 agatttcagc acacgtgcga tcaatcgtta atgaatacgg ccgtggctag aaatcaaaat 3540 gcagggaggc ggaggcgaag aaatcagcgc tctatacggc gcgaccgcgt ggttgtggtc 3600 aacccctctg ggggaccatc acgcggaaga cgacaacgaa gaaaccgccg acgccctaat 3660 cgaggaggca gagctagagg aaggagccca ggcgaaacat tcgtattttc aaaggacaat 3720 ctcacgggca gttcctcagg aagtatcacc ttcgggccgt ctctatcaga gagcccagca 3780 ttcagctctg gaatactcaa ggcctaccat gaatataaga tcatcatggt ccagctggag 3840 ttcatctccg aggcctcttc cacctcctcg ggctccatct cttatgagtt ggacccccac 3900 tgcaagctta gctccctcca atccacgatt aataagtttg gaatcaccaa gaatggattg 3960 cgacgttggg cagctaagca gatcaacggg ttggaatggc atgacgcaac tgaggaccaa 4020 ttcaagatcc tctacaaagg gaacggatct tcctcggttg caggcagctt caggatcacc 4080 atcaagtgcc aggtccaaaa cccgaaatag gtagacggca gttccccccc ccctcccagt 4140 cctagcccga ctccaccacc tccaccacct cctcagcctc aaccccaacc ctgcgctcag 4200 cgcttttggg gttatgaagg caacccacaa aataagatac tcacggcgga aaattcgagg 4260 aacatcgatt cccggccgtt gaactttgtg caaatgtaca agtgggagga tgagaagtgg 4320 gataaggtca acctacaagc cggatactcc cgcaacgatc ggcgttgcat ggagacgtat 4380 ctcacaattc cagcagacaa aggaaaattt cacgtttacc ttgaggctga tggtgagttc 4440 gtcgtcaaac atattggcgg cgagttagac ggcagttggc ttggaaacat cgcttacgat 4500 gtttcccaga gaggttggaa tattggaaat tacaaaggtt gtaaaattaa aaattatcaa 4560 tccaatacaa cctttgtggc gggacacccc gatgctacaa tgaattcaaa aagttttgat 4620 tcagcacggg cagttgaggt cgattggtac gcttccttcg aattagaatg tgatgatgaa 4680 gaaggaagtt gggctatata ccccccccct atacagaagg attcttcgta caattacacc 4740 gtttcatacg ggaattacac ggagaaatat tgcgagtggg gggctatttc agtctcaatc 4800 gatgaagata ataatgggaa cgcgcctaga agaataccac gcaagggggc aatggcgtgg 4860 tctacccccg aaccgtcctt ttcgggggat gaaagtcaaa gacaagactt taaaactcct 4920 tcgcctgaag agcgaggttc cgatgctctg gaatcggaag aaatgaagga agaggaaaac 4980 cttctagaca ggtttgagga agaaaatata cccgatgttg atgatgaaga catttggaag 5040 ggtatttccc gaggttctga atccgggacc gcagaagacg accgagcatc tactagctcg 5100 cgtcttcgtg gcaacctcaa gccacggggc cttccaaaac cacagcccac ccggactata 5160 actcagttca atcctaatcc ggatttggtg gaggcgtgga ggcccgacct agcacccgaa 5220 tactccaaag cggacgtcgc agcggcgact gtgatcgctg gagggagtat tcacgaggga 5280 cgagatatgc tcagacgaag agacgagaaa gtgatggata gcaggaagaa atggggagtt 5340 ctttcttcag cttcctctct cactagcggt tctctaagga agcttagcgc gcagtcagag 5400 aagcttgcca agttgactac tggtgagcgt acagaatatg agcgaatcaa gaattcgcat 5460 ggtaagactg ttgcagctga gtatctcgag atggtgctag ctgataaaac ctcataatcg 5520 ctctgtgggg acaagcgtga ctccacccgg cccccagtga gcctgtccaa atcactgatg 5580 acatcaagcc aaagatgtaa aattggaacg actccgaaag gataggcaac gaacgttccc 5640 actttagtgg aaacaggggg attccccctg gcgtttcggt gt 5682 //