ID EF681765; SV 1; linear; genomic RNA; STD; VRL; 4906 BP. XX AC EF681765; XX DT 15-DEC-2007 (Rel. 94, Created) DT 15-OCT-2009 (Rel. 102, Last updated, Version 4) XX DE Tomato marchitez virus isolate PRI-TMarV0601 segment RNA2 hypothetical DE protein and polyprotein genes, complete cds. XX KW . XX OS Tomato marchitez virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus. XX RN [1] RP 1-4906 RX DOI; 10.1007/s00705-007-1076-0. RX PUBMED; 17965923. RA Verbeek M., Dullemans A.M., van den Heuvel J.F., Maris P.C., RA van der Vlugt R.A.; RT "Tomato marchitez virus, a new plant picorna-like virus from tomato related RT to tomato torrado virus"; RL Arch. Virol. 153(1):127-134(2008). XX RN [2] RP 1-4906 RA van den Heuvel J.F.J.M., Maris P.C., Verbeek M., Dullemans A.M., RA van der Vlugt R.A.A.; RT "Plant virus"; RL Unpublished. XX RN [3] RP 1-4906 RA Verbeek M., Dullemans A.M., van den Heuvel J.F.J.M., Maris P.C., RA van der Vlugt R.A.A.; RT ; RL Submitted (15-JUN-2007) to the INSDC. RL Plant Research International BV, P.O. Box 69, Wageningen NL-6700 AB, The RL Netherlands XX DR MD5; d9dcd4b1990031542d3a345b286c8d41. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..4906 FT /organism="Tomato marchitez virus" FT /segment="RNA2" FT /isolate="PRI-TMarV0601" FT /mol_type="genomic RNA" FT /country="Mexico" FT /collection_date="2005" FT /note="can be propogated in Nicotiana glutinosa'PRI', FT Physalis floridana, or Nicotiana benthamiana in the FT laboratory" FT /db_xref="taxon:470166" FT /culture_collection="DSM:19656" FT 5'UTR 1..138 FT CDS 139..711 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:A9UC62" FT /protein_id="ABV44417.1" FT /translation="MSFIGRLNTSVDEQAFHHQVATSNWICSVDVGTGLINSNPTLDFK FT VVPPSGGAVSVLTVSWENSTPQLVPGHYLLRSGNWPIKNVKLSGLLVHRSVRLETTRKV FT LEENKVSISASSSSSPSSSDSKGKSKVEQPTREDLIKEVEVLKRELERFQKELASQKSE FT NQKLQLQLSNQVSNNDIFSGWTESGPQ" FT CDS 671..4246 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A9UC63" FT /protein_id="ABV44418.1" FT /translation="MTSSQVGLKVGPSNHQQEEASERLISQITAAVEAGNKNLLRKLGM FT GSYGVLYGSQEKRAMELFDPDDVSKITSLWSTFKHKFVESKDHANLFFHLYGVLFFMVP FT HVHSGEGRVKISLCSSNDPLSPVIQEKTLSLADGAQAVLMSPSITLPFLKRGPMFYYTL FT ECQNTRAQIPCSVVAIWKQKIDTRSAVYSQQETMSWAIEALNRPQFFQDRQEAAQYIAS FT VYSSGQSTQMALENKAFVGEQLGGTRMDVMNESTMIRSSSLRVPTLKVQSKRFPSMELP FT AVSTSSLLSTREETVHDEDDCGGLFPAPKKKGQAFNMGAIWDNLGMESFAHIDFPDDWT FT ERTIAQQVQFILFSEAKRGNVIVPRHVAKRHLHNINREHITEDNYVEILEGYGVTNIQG FT LTRTFNWYAMSLKERVVELVHQRDHSFYIQGQTNNPMPNFDCYDGLTLKERQLIVEEQV FT AQRRSERQAQVTARGIAESQPEDRVTDSFVSTTTMEDPTKPDKIEIVAEGAEEETQPGD FT VIFDFGPEMDTSMAVELDMQQPVCVASNDFFNVGVFEFVWEKSANVAEQVMSLALPAAL FT FSKSKETSMGAQMLKYYDAALIMYKIILYVSGVGAISGQLALVWDECNVLNRKKEFINI FT ATLYASKHTLVSASQQNSEEFCFTPTGIGKYVPLDEGTGATDLGSVRVFVTHPLSSATE FT LNSVPCHLHLQCKVLSTNILQPPRMIAQAQYGMKAGQTYFPRFPTNQVLLHYNWGTSSP FT MGTTLVSIFSPSGIYESDGTLQPSLLGNIARNCKWWTGTCVFEICIEKTLFHSGSLAIG FT LGTLNTKMTNAHDIFNMPHVVCNLEMGRKFRFRCSITNWNGKNLLSTGRKSSLPRPQHF FT SHLRLFATVMKPLVSTSIHLDSVGVTVQLKCLENLTLGGTVSVKPIYGHWTKGKSSVDF FT LFSEMDLSQRKEIEKLRKDNIEEYQEKGKDPPKKAQSILSIREKFSYGAVQYFCMGWKD FT DERLLVIPCAPWSIRFEGHSPVKEAITCPFIDWCTSFCYWSGSLNYSIVIHRVQSSPNV FT GGVLNVAFDASGYPFPAGLNKGNYVVSAGGGTKWDFSYGVATNTFSFTVQDDEFFPRRH FT TRMREFSSKQSRIMSLQDRLGNLIINLPPSAIVSSIEILISPGLDFKLELAQPPSANHE FT KYLGNMQTHTYQYTSDFSELRDFAI" FT mat_peptide 2099..2824 FT /product="coat protein Vp35" FT mat_peptide 2837..3547 FT /product="coat protein Vp26" FT mat_peptide 3593..4243 FT /product="coat protein Vp24" FT 3'UTR 4247..4898 FT polyA_site 4898 XX SQ Sequence 4906 BP; 1407 A; 954 C; 1118 G; 1426 T; 1 other; aaagaatttt aatatatatc tgtcatgcaa cctacgtcgt tgtgcgatct acgtcatcgc 60 tcgcagatat aaaattaaat ccttttagct tgagaactac gtcttctcat tttcttttcc 120 tttgttttgt tgttctttat gtcattcatt gggcgtttga atacatctgt agacgaacaa 180 gcttttcatc atcaagttgc cacctcgaat tggatttgtt ctgttgatgt tggcaccggt 240 ttgataaata gcaatcctac ccttgacttc aaagttgttc ctccatcagg tggtgctgtc 300 tcagttttaa ccgtttcttg ggagaattca acgccacaat tagtgcctgg acactatttg 360 ttgcgtagtg gtaattggcc cattaagaac gtaaagcttt ctggtttact tgtccatcgt 420 tcagtgcgtc ttgaaacaac cagaaaggtc ctagaggaaa acaaggtttc tatttcagca 480 tcatcttcat cttctccttc ttcttctgac agtaaaggca agagtaaagt agagcaaccc 540 acacgagagg atctcattaa agaagttgag gttctcaaac gtgagttaga gagatttcag 600 aaagagttgg caagtcaaaa atctgaaaat cagaaactac aacttcaact ctccaatcaa 660 gttagtaata atgacatctt ctcaggttgg actgaaagtg ggccccagta atcaccagca 720 ggaggaagcc tccgagaggt tgatatcaca aataacagct gctgtggagg ccggaaacaa 780 aaatttgctc agaaagcttg gcatgggttc ctacggggtt ctttatggtt cccaagagaa 840 gagagcaatg gagttrtttg acccagatga tgtatcaaag atcacatccc tttggtcaac 900 attcaaacat aagtttgttg agtctaagga ccatgcaaac ttgttttttc atctgtatgg 960 tgttcttttc ttcatggtcc cacatgttca tagtggggag ggaagggtta agataagtct 1020 ttgttcaagt aatgatcccc tctcaccggt aatacaagaa aagacactgt ccttggccga 1080 tggagcgcag gcagttctca tgagccccag cataacattg ccctttctca aaagagggcc 1140 catgttttac tacaccctgg agtgccaaaa taccagggca cagattccgt gttccgtggt 1200 tgccatatgg aaacaaaaga ttgacacaag gagtgcagtt tattcacagc aagaaacaat 1260 gtcttgggcc atagaagcac tcaatcgtcc gcaatttttc caggatagac aggaggctgc 1320 tcaatatata gcttctgttt attcgagtgg gcaaagtact caaatggctc ttgaaaacaa 1380 agcctttgtt ggagaacagc ttgggggcac aagaatggac gtcatgaatg aaagcactat 1440 gatccggagt tcatctttga gagtcccaac tctcaaagtg cagagcaagc gcttcccgtc 1500 catggaactg ccggctgtaa gtacatcatc cttactcagc acacgtgaag aaacagttca 1560 tgatgaggat gattgtgggg gattgtttcc agcacccaag aaaaagggcc aagccttcaa 1620 catgggtgcc atttgggata atttgggcat ggagtcgttc gcacacattg atttcccaga 1680 tgattggaca gaacgaacaa tagctcagca ggtacaattt atcctcttta gtgaggctaa 1740 aagaggaaac gttattgtgc caagacatgt tgcaaagcgg catctgcata atatcaatag 1800 ggagcacata accgaggaca attatgtaga aatacttgaa ggttatggtg ttaccaatat 1860 ccaaggcttg actcgcactt tcaattggta tgctatgtct ctcaaggaga gagttgtgga 1920 gctcgtccat caaagagatc attccttcta tattcaaggg cagactaaca atccaatgcc 1980 gaattttgac tgctatgatg gattaacctt gaaagagcgt cagttgattg tggaggagca 2040 agtggcccaa agaaggtctg aaagacaagc acaggtgaca gcaaggggca tagctgaaag 2100 tcagcctgaa gacagagtga ctgattcctt tgtgtcaact accacgatgg aagatcccac 2160 caagccagat aagatagaaa ttgttgcaga gggagcagaa gaagaaactc aacctggtga 2220 tgttattttt gactttggac cagaaatgga cacatccatg gcagttgaac tggatatgca 2280 gcaaccggtg tgtgtagcta gcaatgattt cttcaatgtt ggagtttttg aattcgtttg 2340 ggagaagtcc gctaatgttg ctgagcaagt aatgagcttg gctttgcccg ctgccctatt 2400 ctcaaaaagc aaagaaactt caatgggtgc gcaaatgctt aagtattacg atgcagctct 2460 aatcatgtac aaaataatac tttatgtttc tggagttgga gctatctctg gtcaactggc 2520 tttggtgtgg gatgaatgta atgtgcttaa tcgaaagaag gaattcatca acatcgccac 2580 attgtatgcc agtaagcaca cattggtttc agcttcacaa cagaacagtg aggagttttg 2640 ctttacccca acagggatag gcaagtacgt gcctctggat gaaggtacag gagccactga 2700 tttaggtagt gtgagagtgt ttgtgacaca ccccttatct agtgcaactg agttgaatag 2760 tgtaccatgc catttgcact tacagtgcaa agtgttatca accaatatac ttcaacctcc 2820 acgaatgata gcacaggctc aatatggcat gaaggcgggg cagacatatt ttccaaggtt 2880 tccaactaat caggttttgt tacattataa ttgggggaca tcatccccaa tgggaactac 2940 attggtaagc atattttcac catcaggaat atatgagagt gatggcacct tgcagccgtc 3000 tttgcttggt aacatagcca ggaattgcaa gtggtggact ggaacttgtg tttttgaaat 3060 ttgcattgag aaaaccttgt ttcattcagg tagtctggca attggacttg gaactctgaa 3120 caccaaaatg accaatgctc atgatatatt taacatgcca catgtggtat gcaatcttga 3180 aatgggtcga aaatttcggt tccggtgttc tattacaaat tggaatggaa aaaatttgct 3240 ttccacaggg cgaaagagtt ccttgccaag accacagcac ttttcccact tgcgcttgtt 3300 tgcaacggta atgaagccac tcgtttcaac gtccatacat ctggattccg ttggtgtcac 3360 agtgcagttg aagtgccttg aaaatcttac tttgggtggc acagtatctg tgaaaccaat 3420 atatgggcat tggacaaaag gcaaaagctc agttgatttc cttttctctg aaatggattt 3480 atcacagcgt aaggaaattg aaaagttgag aaaggacaac attgaggagt accaggagaa 3540 aggcaaagat ccgcccaaga aggctcaaag tattctgtcc ataagagaga aattttccta 3600 tggtgctgta caatatttct gcatgggttg gaaggatgac gaaagattgt tggtaattcc 3660 ttgtgcacca tggtccataa ggtttgaagg gcacagtcct gttaaggagg caatcacttg 3720 tccatttata gattggtgta catcattttg ttattggtca ggtagtttga attattcaat 3780 tgtgatacac agagtacaat ccagtcctaa tgttggaggt gtactaaatg ttgcttttga 3840 tgcctcaggc tatccttttc cagctgggct taataaagga aattatgtgg tatcagcagg 3900 tggaggcaca aaatgggatt tttcatacgg tgtggcaaca aatacgttct cattcactgt 3960 gcaagatgat gagtttttcc caaggcggca tacaaggatg agggaattct caagcaagca 4020 atcccgcatc atgtcactac aggataggct tggaaatctg atcataaatt tgcctccttc 4080 cgccatagtg agttccattg agatacttat atctcctgga cttgatttca agttggagtt 4140 ggcccaacct ccttctgcca accatgaaaa atatcttggc aatatgcaaa ctcacaccta 4200 tcagtatacc tcagattttt ctgagctacg tgattttgcg atttgaaaaa gtaccatgct 4260 actgggtata tagtagccaa atacacttat ctacgtgtac tgttagtagt agctaagtgg 4320 tgtttgtttg caatgataag ggagagttaa gggagagtac tgtcttttaa tagatgggag 4380 tcccctccac ttcatggaga ccaatgaatc tacattggta tagaggtttg cacgctcctc 4440 tttaaataag tttcgtgtgc cctgcttggt tagaaagcat gtggtgatta acactactcg 4500 tttggagtat aagcaataga cctcatgatg tctaactcat gcgtgattgc tcatgtacga 4560 aataaatgag ccgtttggaa ctcgataatt tcctttagct gctgtacagc tgtcactatt 4620 aggggtagtg gcgaagttgt gagtcccctc ttcctcccta ggttcgtcca gagggttcaa 4680 agattcacct tctttgtcaa gaagcgatga atgacacgtg ttgcgtcgac aaagcaccgt 4740 tctacgtggt tagtagaaag ttatattata ttagatttgt tagtcaattg tgtgatttct 4800 ttcctagatt aggaagtttt ccgtggcgat aggaagggtt tgtcctttta ccttctttgc 4860 tatgctggac acaaaaagat tttcttttct tttattttaa aaaaaa 4906 //