ID EF681764; SV 1; linear; genomic RNA; STD; VRL; 7229 BP. XX AC EF681764; XX DT 15-DEC-2007 (Rel. 94, Created) DT 15-OCT-2009 (Rel. 102, Last updated, Version 4) XX DE Tomato marchitez virus isolate PRI-TMarV0601 segment RNA1 polyprotein gene, DE complete cds. XX KW . XX OS Tomato marchitez virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus. XX RN [1] RP 1-7229 RX DOI; 10.1007/s00705-007-1076-0. RX PUBMED; 17965923. RA Verbeek M., Dullemans A.M., van den Heuvel J.F., Maris P.C., RA van der Vlugt R.A.; RT "Tomato marchitez virus, a new plant picorna-like virus from tomato related RT to tomato torrado virus"; RL Arch. Virol. 153(1):127-134(2008). XX RN [2] RP 1-7229 RA van den Heuvel J.F.J.M., Maris P.C., Verbeek M., Dullemans A.M., RA van der Vlugt R.A.A.; RT "Plant virus"; RL Unpublished. XX RN [3] RP 1-7229 RA Verbeek M., Dullemans A.M., van den Heuvel J.F.J.M., Maris P.C., RA van der Vlugt R.A.A.; RT ; RL Submitted (15-JUN-2007) to the INSDC. RL Plant Research International BV, P.O. Box 69, Wageningen NL-6700 AB, The RL Netherlands XX DR MD5; 01993b2575eccc4646c8903d26bcb308. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..7229 FT /organism="Tomato marchitez virus" FT /segment="RNA1" FT /isolate="PRI-TMarV0601" FT /mol_type="genomic RNA" FT /country="Mexico" FT /collection_date="2005" FT /note="can be propogated in Nicotiana glutinosa'PRI', FT Physalis floridana, or Nicotiana benthamiana in the FT laboratory" FT /db_xref="taxon:470166" FT /culture_collection="DSM:19656" FT 5'UTR 1..140 FT CDS 141..6596 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:A9UC61" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:A9UC61" FT /protein_id="ABV44416.1" FT /translation="MAFSKMFSKVAGVDDASSSSTTSFFGELSNSISKFSKAVSNITTM FT SQKISDHLEDLKPSVTDVSTSFVATCSSLNKVLDKIGALIDPFLKAYSFLSTMYKSIKD FT MVLKLFESLSNKVKLGFAWVLNKSEDVDIVVYGFLVFAITLLVLLFVCPSDIVEGVSNT FT VKNIFLIVGNMFSSLYNLDWFPKWAERFTMVAQASMLPGESVSHTPTSQLMSTILAFGI FT STLVFIAVPGRPNGLSNPLSKILYSTGSGAQQCNQLFTLYRNMKDCTSQAFSWVLEIIV FT GTFGFKNPVLSAISATLSTDLFEWMQEVDAVCDPATRLENFANKAFPTKLNHLREEALK FT ISAYIATHPVAAFMSHRVSAAIAQLEKVYAESCRHMGVGQYRIEPFMVQWFGSSGCGKS FT TSMRLFINDVLDRMGEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDGAGQCQDI FT KDLIDIKSTQPAPLPMAAVEDKGRHFTSKYIFATSNLISAPAQCGLTYPDAFERRRDIL FT VECMKEGEFSTEDPTGHLRFNIVESRRPHAITHRNLTYSDLLEYVVAKCQVHAEVSKQL FT FEAESGISPKIAQVQVSADDVIASVDGARLRTKQDEPILVPTVVSENDRVIYARELTVE FT ALKYAYQGSLDPEELFPHDHHKQAMYDSLDDEHKEIFNKWRVNMLYRGADAEQYRWLVQ FT NIPDDYIMHFKSFIYASTISEKKLAVQTEMRTGFAHSCIDADVDTLICIEQMPPFVQFL FT YTAFVRYWCNKVSKEPKESWIKICYHKIVEYIKDTWWSLPYALRLLIKAGLIIMALNGV FT FGGITAFLACWQSNSFPNASGRGGVTNESNSISSKKNKGNKLRNLLVGQSSQSLAQDWA FT AEDGFVNQSLKKNLVVLRLGEGVYFRGTYVCSGWIMTVAHAFHNARDGTPFTIIHANSR FT SKVQYNARESRIIEGQDIILLRVGDPDGPKPDIRKHFPRRDEVCFTKGSQGLCCRAVAS FT TDPRLGNLEFLKMPVMMSKGYTVKVEYELNSSSFKICSQQSYEYHINGENGDCGTLLLL FT PSVQNKQPVIVGIHCASYDGVAAERGFISSNATAIYREQLEDLPTGPVKAAMVRCDILK FT SIRSRETQLFEENQVYYLGTVPQELAATVPHKTTLRKSQLFEAFGPAETAPSILTVHDK FT RGDGFDPYVAGVMKYNETACGFDDDIAKLAFENLKCSLLPIMRSQKIPGGRPCERDEDV FT VLNGIDGCDYYDGMELSTSCGYPFNKMGMGMNKREFVQSTGEGERVELKRDTPVFEAWE FT ELDVQIRKGIHVDLVTTQCAKDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLDFSA FT TLMALHNAIPCKVGIDPTSSEWTLLANGFRAVSDVGFSADYSSFDGRAPVFAFQWFCDL FT VDEYYGSKPGSPDSNARHALLMMASCHYTLCEDKVFRLVGGMPSGFALTVIFNSLLNEF FT YMRYAFISLLRRPHIAARAIGVKPSDFNQLFIAVYGDDNLVAVPLHLQWYSLPNIAHEL FT ELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPMYWI FT RPAPGCPDTQAMMENVETGIREAFHHGRVAYDKLVLDVQTALDERGFRAVIFPSYLEVE FT QEWIAKVTGDSSALTICEMAKAAISYTPLDAGEKITNFERDLNWFAPNIGFCSARTAAH FT YTWDEGYIIVNCTGAKKSNWVRGPANWKDFEGKMWPYTMSAIMDAQKNVLAGGHVATNV FT VFVCGNGYAVGPICAALMALATRQYCVEDIIVRLRTIGNVLDLNTYPGGCVQYFLQCVP FT HGDKVAQSGASLHSSFMHQGFELGNLRIIHGDLAKQTAMRMPYVVGPHGGWGNFSTQDL FT ESLLHYLEQGYAELIQKNTKLTLYFKELSMENVQQLIDFVKLQGFFPKETTIQKLKNFV FT DAECLTFKARSFRHVVFKKKLLSSTWKMCGESIVASRSAESLFPGNLSASVLKTLLERH FT TRSMSCQSMELALKIYLLNFQVITSEILKKFEDIFQEKISTTLLIKVFLWLEESYQTEI FT CIDSQVLQRINSQKFRVQEGGFYLHPEGINMNAVDAIIFSLWESYSRDSNSYSVSTPIK FT LGCFIFLVVLDSQGKEDHPVRRFSTVFLKNCETILTNYKEP" FT mat_peptide 1329..1622 FT /product="helicase" FT /note="motif A to C" FT mat_peptide 4053..4799 FT /product="RNA-dependent RNA polymerase" FT /note="motif I to VII" FT 3'UTR 6597..7220 FT polyA_site 7221 XX SQ Sequence 7229 BP; 2061 A; 1361 C; 1677 G; 2130 T; 0 other; aaagaattat atatcaagat tgcaacctac gtcgttgttc acagactacg cctctgttaa 60 ttgatatttg attcttgtaa acttttccaa catcttcttc tcttcttact cgaccattat 120 ttaaactcct caattttcca atggcttttt caaagatgtt ctccaaggtt gctggtgttg 180 atgacgccag ttcttcttcc accacttcat tctttggtga actttcaaat tctatttcca 240 aattttcaaa agcggttagt aatattacca ctatgtcaca gaagatttca gatcatcttg 300 aggatctgaa accatctgtg actgatgtgt ccacatcttt tgtggccact tgtagttcac 360 ttaataaagt tttggacaaa attggtgcac ttatagatcc atttcttaaa gcgtactctt 420 tcttgtccac aatgtacaaa tctatcaagg atatggtttt aaaattgttt gagagtttgt 480 ccaataaagt taaattagga tttgcttggg tgttaaataa aagtgaagat gtagatatag 540 ttgtatatgg ttttcttgta tttgctataa cattgttagt gcttctattt gtttgtccta 600 gtgatattgt tgagggtgtt tctaacactg tcaaaaatat ctttttgata gtcggaaaca 660 tgttttcaag tctatacaat ttagattggt ttccaaaatg ggccgaacga ttcaccatgg 720 tggcccaagc tagtatgctt cctggggaat cagtttcaca tacaccaacg tctcagttga 780 tgtccacaat attggctttt gggatttcga cgttggtgtt cattgcagtg cctggtagac 840 caaatggctt gagcaaccca ttgtccaaaa ttctctattc gacaggaagt ggtgctcagc 900 agtgcaatca actattcact ctttaccgta atatgaaaga ttgcacctcc caggctttct 960 catgggttct tgaaataata gtcggcacct ttggattcaa aaatcctgtg ttgtcagcta 1020 taagtgcaac gctgtccact gatctgttcg agtggatgca ggaggttgat gcagtgtgtg 1080 atcctgcaac gcgccttgag aactttgcca ataaggcttt ccctaccaaa ttgaaccatc 1140 tgagggaaga agctctcaag atctcagctt acattgcaac ccatccagtt gcggccttca 1200 tgagccacag ggttagtgct gccattgcgc agttagaaaa agtttatgct gaaagttgta 1260 ggcacatggg cgtgggccag tatcgtattg aaccttttat ggtacaatgg ttcgggtcca 1320 gtgggtgtgg taaatctaca tccatgcgct tatttattaa tgatgtgttg gacagaatgg 1380 gtgagccaaa actcaatcgg ctatatgcag taagtaagag ggatgcatat tggtccaact 1440 atgctcacca aactgctatc ctgatggatg acatgggagc attgcgagat ggggctgggc 1500 agtgccaaga tattaaagat ctgattgata tcaaatcaac acaaccagca cccttaccaa 1560 tggccgcagt tgaggacaaa ggcaggcatt tcacctccaa gtatatattt gccacatcca 1620 atctgatctc agctcctgcc caatgtggtc ttacatatcc agatgctttt gagcggagaa 1680 gggacatcct ggtggagtgt atgaaggagg gcgagttttc cactgaagat cctacgggac 1740 atctcagatt taacatagtg gagagcagaa gacctcatgc tatcactcac aggaatttga 1800 cctatagtga tcttttggag tatgtggtag ccaaatgtca ggtacatgca gaagtatcaa 1860 agcaattgtt tgaagctgaa tctggcataa gtcctaagat agctcaggtt caagtttctg 1920 cagatgatgt gatagcgtct gtggatgggg ctagattgcg caccaagcaa gatgaaccaa 1980 tattggtgcc cactgttgtg agtgaaaatg atagagtgat ctatgcaaga gagctcacgg 2040 tagaggcatt gaaatatgca taccagggca gtttggaccc tgaggaactt tttcctcatg 2100 accatcataa gcaggccatg tatgattctc ttgatgatga acataaagag attttcaaca 2160 aatggagagt caacatgttg tatagaggag cagatgctga acagtatcga tggttggtac 2220 aaaacattcc tgatgactat ataatgcact ttaagagttt catttatgca tcaaccatct 2280 ctgagaagaa actagcagtg cagacagaga tgaggactgg atttgcacat tcttgcattg 2340 atgcagatgt tgacaccctc atatgtatcg agcagatgcc accctttgtt cagtttttat 2400 atacagcatt tgtgagatac tggtgcaaca aagtatcaaa agagccaaag gaatcatgga 2460 tcaaaatttg ctaccataaa atcgttgaat atatcaagga tacatggtgg agccttccct 2520 atgcactgag attgctcatc aaagcaggtc tgattataat ggctcttaat ggagtttttg 2580 gaggcattac agcatttttg gcgtgctggc agagtaactc tttccccaat gcatcgggca 2640 gaggaggtgt gaccaatgaa tccaacagta tatccagtaa gaagaacaag ggtaataagc 2700 tcagaaatct tctcgttggt caaagttctc aatcattggc acaagattgg gctgctgaag 2760 atggatttgt aaatcagagc ctcaagaaaa atttggtggt gttaagactt ggtgaaggag 2820 tgtactttag aggcacctac gtgtgttctg gttggataat gaccgtagct catgcattcc 2880 acaatgctcg agatggtact ccatttacaa tcatccatgc caattctcga tctaaagttc 2940 aatacaacgc cagagaatca aggattattg agggccaaga catcattctg ttgcgcgttg 3000 gtgatccaga tggtccaaag cctgacatcc gtaaacactt cccaagaagg gatgaggtgt 3060 gcttcacaaa gggctcacaa ggattgtgct gtagagctgt tgcgtctaca gatccacgtc 3120 ttggcaattt agagtttctc aagatgccag tgatgatgtc aaagggatac acagttaaag 3180 tggaatatga actgaactcc tccagtttta agatttgctc tcaacaatct tatgaatacc 3240 acataaatgg ggaaaatggt gactgtggca cgttgctact gttaccaagt gttcagaata 3300 agcaacctgt gatcgttggc atccactgtg catcatatga tggcgtagca gctgaacgtg 3360 gatttatctc ttcaaatgct acagctatct acagggaaca actagaggat ttgccaactg 3420 ggccggtcaa agcagcaatg gtacgctgtg atattctgaa gtcaattaga agcagagaaa 3480 cacagctttt tgaggaaaac caagtgtact accttggaac agttccacag gagttggccg 3540 ccacagttcc ccacaagacc actctgcgga aaagccaatt gtttgaagca ttcggacctg 3600 cagagacagc accatccatt ctaacagttc atgacaaaag aggtgatggt tttgacccct 3660 atgtggctgg ggtaatgaaa tacaatgaaa cagcttgtgg atttgatgat gacattgcca 3720 aactagcatt cgaaaatctc aagtgctcgc tgctacctat catgcgtagc cagaagatcc 3780 ctgggggacg tccatgtgaa agggatgagg atgtagtgct caatggaata gatggatgtg 3840 attactatga tggcatggag ctgagcacat cttgcggata tcccttcaac aagatgggga 3900 tggggatgaa caagagagaa tttgtgcaat ccactggcga aggagagaga gtggaactca 3960 aaagagacac tcctgtattt gaagcatggg aagagctaga tgtgcagatt aggaaaggca 4020 tccatgtgga tctggtcacc acccaatgcg ccaaagatga acgcctccca cttgagaaaa 4080 tctatggcaa gagaaagacc aggctctttg agatacttcc tttccattac aacatgttgg 4140 tcaggaagta ttttcttgat ttctcagcca cattgatggc tttgcacaat gctataccat 4200 gcaaagttgg tattgatcct acaagttctg agtggacatt gttggcaaat gggtttagag 4260 ctgtgtcaga cgtgggattt tcagctgatt attccagctt tgatggaaga gcacctgttt 4320 ttgcttttca gtggttttgt gatttggtgg atgaatacta cggatcaaag cctggcagtc 4380 ctgattccaa tgctcgacat gcacttttaa tgatggcatc ttgtcattac acactgtgcg 4440 aggataaagt gtttaggttg gttgggggca tgccatcagg atttgcacta acggtcatct 4500 tcaattctct cctcaatgag ttttatatgc gatatgcctt tatatcattg ttaagaagac 4560 cccatattgc tgccagggct ataggagtta aaccaagtga tttcaatcag ctattcatag 4620 ctgtttatgg agatgacaat cttgttgctg taccattaca tctccagtgg tattctctgc 4680 caaatatagc acatgagtta gaactggtca atgtaatcat taagaatggt cttgacaaat 4740 cgatggatgt taatgaggta caatttcaag atttgtctga gctaactttt ctgagtagag 4800 gttttaaacg acatgctctt ggataccaca tggctcctct caagtgggtt tcaatcattg 4860 agcccatgta ttggataaga cctgccccag gttgtcctga cactcaggcc atgatggaaa 4920 atgtggaaac aggaatacgt gaagctttcc atcacggtcg tgtggcttat gacaagcttg 4980 tcttagatgt tcagacggcg ttggatgaaa ggggtttcag agctgtgatc tttccttcct 5040 atttggaagt ggaacaggaa tggattgcaa aggtaacagg ggattcaagt gccctgacaa 5100 tttgtgaaat ggcaaaagca gctatttcct atacgccatt ggacgcaggt gagaagatca 5160 caaattttga gcgtgatctg aattggtttg caccaaacat tggtttttgt tcagcacgta 5220 ctgcagccca ctacacgtgg gatgaagggt acattattgt caactgtaca ggtgcaaaga 5280 agtccaattg ggttagaggt ccagccaact ggaaggactt tgaagggaaa atgtggccgt 5340 acactatgtc agctataatg gatgcccaaa agaatgtgtt ggcaggagga catgtagcaa 5400 ccaatgtcgt ttttgtgtgt ggaaatggat atgctgtcgg cccaatttgt gcagcgctga 5460 tggccttagc aacaaggcaa tattgtgtgg aggacataat agttagattg cgcacaattg 5520 gaaatgtgct tgacctcaat acctatcctg gaggctgtgt gcagtatttt cttcaatgtg 5580 tgcctcatgg agacaaagtg gctcaaagtg gtgcatcgct ccacagtagt tttatgcacc 5640 aagggtttga attgggcaac ctccgcatta tacatggtga tttagcaaaa cagacagcaa 5700 tgcggatgcc atatgtggta ggaccacatg gaggatgggg aaatttttcc acacaggatc 5760 ttgagagttt gctacactat ttggagcagg gatatgcaga gttaattcaa aagaatacaa 5820 aactaactct gtatttcaaa gagctgagta tggaaaatgt gcaacaactg atagattttg 5880 ttaagcttca ggggtttttc ccaaaagaaa ctaccattca gaagctcaaa aattttgttg 5940 atgctgaatg tctaacattc aaagcaagga gctttaggca cgtagttttc aaaaagaaac 6000 ttttgagttc cacatggaaa atgtgtggtg aaagtattgt tgcttcaagg tctgcagaga 6060 gtctattccc tggcaatttg tctgcttccg tattgaaaac attattggaa agacacacaa 6120 gaagcatgag ttgtcagagt atggagcttg ctctgaaaat atatctatta aacttccaag 6180 taataacaag tgagatatta aagaagtttg aagatatatt tcaggagaag atatccacca 6240 ccctactaat caaagtattc ttgtggcttg aggagagtta tcagactgag atctgtatag 6300 attctcaggt gctccagagg ataaactccc agaaattcag agtgcaggaa ggtggttttt 6360 atttgcatcc tgaaggaatc aacatgaatg ccgtagatgc aataatattt tctctgtggg 6420 agtcctatag ccgagatagt aactcctatt ctgtgtcaac tcccatcaaa ctggggtgtt 6480 tcattttcct tgtcgtgcta gatagtcaag gcaaggaaga tcatcctgtt cggaggtttt 6540 caacggtttt ccttaaaaac tgtgaaacca ttcttacaaa ttacaaggag ccttgagtca 6600 ggcattatga ctcaatttgt gcgatatgca tgtgtactgt tagtaatgta tatcgttagg 6660 atggttttgt taagggagag tactgtcttt taatagatgg gagtcccctc cactttatgg 6720 agaccaatga atctacattg gtatagaggt ttgcacgctc ctctttaaat aagtttcgtg 6780 tgccctgctt ggttagaaag catgtggtga ttaacactac tcgtttggag tataagcaat 6840 agacctcatg atgtctaact catgcgtgat tgctcatgta cgaaataaat gagccgtttg 6900 gaactcgata atttccctta gctgctgcac agctgtcact attaggggta gtggcgaagt 6960 cgtgagtccc ctcttcctcc ctaggttcgt ccagagggtt caaagattca ccttctttgt 7020 caagaagcaa tgaatgacac gtgttgcgtc gacaaagcac cgttctacgt ggttagtaga 7080 aagttatatt atattagatt tgttagtcaa ttgtgtgatt tctttcttag attaggaagt 7140 tttccgtggc gataggaagg gtttgtcctt ttaccttctt tgctatgctg gacacaaaaa 7200 gattttcttt tcttttattt taaaaaaaa 7229 //