ID   EF635930; SV 1; linear; mRNA; STD; VRL; 613 BP.
XX
AC   EF635930;
XX
DT   01-JAN-2009 (Rel. 98, Created)
DT   01-JAN-2009 (Rel. 98, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus isolate CB671 putative aphid transmission
DE   factor mRNA, partial cds; and capsid protein and movement protein mRNA,
DE   complete cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-613
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   "Detection and molecular characterization of sugarcane yellow leaf virus,
RT   causing yellow leaf of sugarcane in tropical India";
RL   Unpublished.
XX
RN   [2]
RP   1-613
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   ;
RL   Submitted (30-MAY-2007) to the INSDC.
RL   Plant Pathology, Sugarcane Breeding Institute, Sugarcane (post),
RL   Coimbatore, Tamil Nadu 641 007, India
XX
DR   MD5; 3ffb007fb6342efea7848907c7f11230.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..613
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum sp. hybrid, variety CoC 671"
FT                   /isolate="CB671"
FT                   /mol_type="mRNA"
FT                   /country="India"
FT                   /clone="1"
FT                   /db_xref="taxon:94290"
FT   CDS             1..>613
FT                   /codon_start=1
FT                   /transl_except=(pos:589..591,aa:OTHER)
FT                   /product="putative aphid transmission factor"
FT                   /note="ORF5; produced by translational readthrough of TAG
FT                   stop codon of ORF3"
FT                   /db_xref="GOA:B8LJ44"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B8LJ44"
FT                   /protein_id="ACB87397.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKEFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPT"
FT   CDS             1..591
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:B8LJ45"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B8LJ45"
FT                   /protein_id="ACB87395.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKEFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT   CDS             32..484
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B8LJ46"
FT                   /protein_id="ACB87396.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKNS"
XX
SQ   Sequence 613 BP; 177 A; 169 C; 146 G; 121 T; 0 other;
     atgaatacgg gcgctaaccg ctcacgaagg aatgtcagaa gacgcgctaa ccgtcgtcga        60
     cagactcggc cagtggtcgt ggtccggcct gccgcaggac ctagacgagt acgacgacgt       120
     agagcacgtg ttggaggaaa cgctgtgcga ggaccgggag gaagaagcaa cagggatgtt       180
     ctcactttca cgattgacga tctcaaggcc aactcaaccg ggatcctcaa attcggaccg       240
     aacctatctc agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa       300
     atcacaagtc tcacaattca gtataactca tgctcctccg acgcaactcc aggtgcaatc       360
     gcacttgaag tggatacatc ctgctcccaa acaacaacag gctccaagat tactagcttc       420
     cccgtcaaga ggaacgccaa gaaaaccttc ccggccccct tcatcagggg gaaagaattc       480
     atgactacat cagctgatca gttttggctt ttgtacaaag ggaatggaga cggaagccta       540
     gcaggacaat tcgtctgccg atttgaatgt ttattccaga atcccaaata ggtaggcgac       600
     gctcccccaa cac                                                          613
//