ID   EF635061; SV 1; linear; genomic RNA; STD; VRL; 943 BP.
XX
AC   EF635061;
XX
DT   27-JUN-2007 (Rel. 92, Created)
DT   08-APR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Cowpea mild mottle virus isolate Maranhao coat protein gene, partial cds;
DE   and putative nucleic acid binding protein gene, complete cds.
XX
KW   .
XX
OS   Cowpea mild mottle virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-943
RX   DOI; 10.1016/j.jviromet.2007.11.005.
RX   PUBMED; 18192032.
RA   Gaspar J.O., Belintani P., Almeida A.M., Kitajima E.W.;
RT   "A degenerate primer allows amplification of part of the 3'-terminus of
RT   three distinct carlavirus species";
RL   J. Virol. Methods 148(1-2):283-285(2008).
XX
RN   [2]
RP   1-943
RA   Gaspar J.O., Belintani P., Almeida A.M.R., Kitajima E.W.;
RT   ;
RL   Submitted (28-MAY-2007) to the INSDC.
RL   Zoologia e Botanica, UNESP- Instituto de Biociencias Letras e Ciencias
RL   Exatas, Cristovao Colombo 2265, Sao Jose do Rio Preto, SP 15054-000, Brazil
XX
DR   MD5; 55ebc45c5c0aae00e9cb93d85e79d34d.
DR   EuropePMC; PMC3528291; 23242372.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..943
FT                   /organism="Cowpea mild mottle virus"
FT                   /host="soybean"
FT                   /isolate="Maranhao"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /note="PCR_primers=fwd_name: Carla-CP, rev_name: Oligo
FT                   d(T)"
FT                   /db_xref="taxon:67761"
FT   CDS             <1..510
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="Orf5"
FT                   /db_xref="GOA:A6NA64"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:A6NA64"
FT                   /protein_id="ABR26256.1"
FT                   /translation="GLGVPTEHVAEVLLQVAIYCKDVSSSSFMDSSGTFDWKGGSILSD
FT                   SVIAALRKDDNTLRRVCRLYAPITWNFMLTHKAPPSDWAAMGFKYSDRFAAFDCFEYVE
FT                   NPAAIQPAEGLIRKPTSSEKIAHNTYKRLALDRSNRNELYANLNTEVTGGTLGPEISRN
FT                   FNHAKK"
FT   CDS             513..854
FT                   /codon_start=1
FT                   /product="putative nucleic acid binding protein"
FT                   /note="11 kDa; Orf6"
FT                   /db_xref="GOA:A6NA65"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:A6NA65"
FT                   /protein_id="ABR26257.1"
FT                   /translation="MISCKLIAIHVSLVSRKLGYVLPFELCVLISLKAGPTRLGIGRSS
FT                   YARKRRAKIIGRCHLCYRVNPKFYFTKRCNGVDCKPGLNYPSWVGVFIRYGVYSKGSNC
FT                   GDTPQILNS"
XX
SQ   Sequence 943 BP; 247 A; 177 C; 231 G; 288 T; 0 other;
     ggtttgggcg tgcccactga gcatgtggct gaggttctct tacaagttgc aatctattgc        60
     aaggatgtca gttcctcaag ctttatggat tctagcggca cctttgattg gaaaggtggc       120
     tccattttgt ctgattcagt gattgccgct ttgaggaaag acgacaatac ccttcgtagg       180
     gtatgtcgat tgtatgcccc aattacatgg aatttcatgt tgactcacaa agctccacct       240
     tctgattggg ctgccatggg tttcaaatac tctgatcgat ttgctgcatt tgattgtttt       300
     gagtatgtgg agaaccctgc tgctattcaa cctgctgagg ggttgataag gaagcctaca       360
     tccagtgaga aaattgctca caacacatac aaaaggttag ctttggacag gtcaaacaga       420
     aacgagctgt atgctaactt gaatactgaa gtgactggag gtactctagg gcctgaaata       480
     tctcgcaact tcaatcacgc taagaagtaa agatgataag ttgtaagttg atcgccattc       540
     acgtttccct tgtgagtagg aagctaggat atgtgttgcc gtttgaattg tgtgtattaa       600
     taagccttaa ggccggtccc actcgtttgg gaattggtcg ctcttcctat gctaggaaga       660
     gaagggcaaa gataattggg cgttgtcatc tgtgttacag agtaaacccc aaattttact       720
     ttaccaagcg ttgtaatggt gtggattgta aacctggttt gaattacccg agttgggttg       780
     gagtttttat acgctacggc gtgtactcta aggggagtaa ctgcggtgat acccctcaaa       840
     tattaaactc ttgaaccaag gaaagagtat aaagagtcct tgtgcatctt cagacctaac       900
     tgttgagatg agaaccggtt ttaaagttat tttcctggtt tta                         943
//