ID EF630360; SV 1; circular; genomic RNA; STD; VRL; 6095 BP. XX AC EF630360; XX DT 06-MAR-2008 (Rel. 95, Created) DT 06-MAR-2008 (Rel. 95, Last updated, Version 1) XX DE Foxtail mosaic virus, complete genome. XX KW . XX OS Foxtail mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6095 RX DOI; 10.1007/s00705-007-1057-3. RX PUBMED; 17955161. RA Bruun-Rasmussen M., Madsen C.T., Johansen E., Albrechtsen M.; RT "Revised sequence of foxtail mosaic virus reveals a triple gene block RT structure similar to potato virus X"; RL Arch. Virol. 153(1):223-226(2008). XX RN [2] RP 1-6095 RA Bruun-Rasmussen M., Madsen C.T., Johansen E., Albrechtsen M.; RT ; RL Submitted (23-MAY-2007) to the INSDC. RL Genetics and Biotechnology, University of Aarhus, Faculty of Agricultural RL Sciences, Thorvaldsensvej 40, Frederiksberg C DK-1871, Denmark XX DR MD5; e17c66d7e56caa9812ac6955efb9c107. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..6095 FT /organism="Foxtail mosaic virus" FT /mol_type="genomic RNA" FT /isolation_source="plant infected with Foxtail mosaic virus FT clone p9" FT /db_xref="taxon:12179" FT CDS 27..4034 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:B1NLQ0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B1NLQ0" FT /protein_id="ABW25054.1" FT /translation="MSIEAVFDQVTDPSLRAVIQEEAHKQIKDLFKETTRCNPYSIPQA FT GRKVLEKYAIPYNPYSLKLHPHAASKAFEVSLYEAASYYLPSTSSTPVTFMFTKPGKLR FT FFRRRGHVDKFVNADIVPRDLARYPRDTVYSYLPEITTTHAFIGDTLHHFGEDFLVEVF FT SRSPKLEVLLATMVLPPEAFYRMESLHPSVYTLLYRDDRFLYLPGGLSGGEYEHRYKDL FT NWLTFGTVTRGGTTITGERIETKAANHLFLFRRGRLETPKFRSFDMPEPMVLLPKVFRP FT AKYNVQKPIPREKANKWLMYVKSIGNATIRDVWAKLRQTIANADIGLFSPTELVHLTNY FT FLLLGRLDSHNSFDQVLADSVLKAWFRPMVAKLQEIKHKLMGQTQFMQLCQALEMTEVD FT LVFEVRDSKTPHKQAVPLDREIENALLEGVSSEPTYTETEGVADSPLPPPMQTAAEPSA FT TSDEPESSSSREIEHQPAPEITLDEEEPQRDDLPWDAWRTQLRALGFEASERQFDPDGE FT LISPILSTRRLPKTPIDTTLYATLDKIARCPTFYKPDTDRAQTYARDVMAGKTSAILKQ FT QPFEWKTTLKRKTKEEPKEIHLAVLHGAGGSGKSYALQEFMRNNSDTPITVILPTNELR FT ADWKKKLPAHDKDTFMTYENALLCPRGDIFIMDDYTKLPRGYIEAFVQNAPALSLLILT FT GDPNQAEHFETTEDNEINSLAPASVVFGKFSRYHINATHRNPRNLANALGVYSETPGEV FT KVLYTRNIKTGYHNLVPSQMKMRNYASLGQRASTYAGCQGITAPRVQIILDSDTPRCTR FT QVMYTALSRATTEVVLCNTMPDEKSFFQKVEATPYLKAILNLNKEIKVTEGDLTEEPPR FT EPAPPTTHLPVENRIILNEALVEPLPDKHDREIYSNSTGFSNCIQTQDPYIQAFQHQQA FT KDETLFWATVEKRLAASTPKDNWTEFKTKRPLGDVLWLAYKRAMMLPDEPIKFNPELWW FT ACADEVQKTYLSKPIHALKNGILRQSPDFDWNKLQIFLKSQWVKKIDKIGKIDVNAGQT FT IAAFYQPTVMLFGTMARYMRRIRDTYQPGEILINCEKNQKHISKWVESNWNHRLPAYTN FT DFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPT FT FDANTECNIAYTHARFEIPKDVAQMYAGDDCALNCRPVERQSFLPLVEKFTLKSKPKVF FT EQKVGSWPEFCGNLITPRGYLKDPMKLQHCLQLAQRKKPSEPGSLKDVAENYAMDLLPT FT YELGDALYEIFDERQMNAHYQSVRTLITCAHTKVLRVAQALQEDCSFFSSI" FT misc_RNA 4062..6095 FT /note="subgenomic RNA1" FT CDS 4078..4788 FT /codon_start=1 FT /product="26K protein" FT /note="ORF2" FT /db_xref="GOA:B1NLQ1" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B1NLQ1" FT /protein_id="ABW25055.1" FT /translation="MDSEIVERLTKLGFVKTSHTHIAGEPLVIHAVAGAGKTTLLRSLL FT ELPGVEVFTGGEHDPPNLSGKYIRCAAPPVAGAYNILDEYPAYPNWRSQPWNVLIADNL FT QYKEPTARAHYTCNRTHRLGQLTVDALCRVGFDITFAGTQTEDYGFQEGHLYTSQFYGQ FT VISLDTQAHKIAVRHGLAPLSALETRGLEFDETTVITTKTSLEEVKDRHMVYVALTRHR FT RTCHLYTAHFAPSA" FT CDS 4721..5104 FT /codon_start=1 FT /product="14K protein" FT /note="ORF3" FT /db_xref="GOA:P22170" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P22170" FT /protein_id="ABW25056.1" FT /translation="MSLSHGTGAPAISTPLTLRPPPDNTKAILTIAIGIAASLVFFMLT FT RNNLPHVGDNIHSLPHGGSYIDGTKSINYRPPASRYPSSNLLAFAPPILAAVLFFLTQP FT YLATRRSRCVRCFVVHGACTNHT" FT CDS 5086..5244 FT /codon_start=1 FT /product="6K protein" FT /note="ORF4" FT /db_xref="GOA:P22171" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:P22171" FT /protein_id="ABW25057.1" FT /translation="MHESHLVVILALLLLALWCLSTRPVQPSCHVEINGHSIIVTGNCW FT HSTQRPH" FT CDS 5174..5974 FT /codon_start=1 FT /product="coat protein" FT /note="ORF5A; amino-terminal extension of coat protein" FT /db_xref="GOA:B1NLP8" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B1NLP8" FT /protein_id="ABW25058.1" FT /translation="MSKSTATPSSSPETAGTPLNDRIEGVRVTNISEEKQPTSSVTSSF FT QDTMAPQDADVTDATDYKKPPAETEQKALTIQPRSNKAPSDEELVRIINAAQKRGLTPA FT AFVQAAIVFTMESMDKGATDSTIFTGKYNTFPMKSLALACKDAGVPVHKLCYFYTKPAY FT ANRRVANQPPARWTNENVPKANKWAAFDTFDALLDPYVVPSSVPYDEPTPEDRQVNEIF FT KKDNLSQAASRNQLLGTQASITRGRLNGAPALPNNGQYFIEAPQ" FT misc_RNA 5270..6095 FT /note="subgenomic RNA2" FT CDS 5318..5974 FT /codon_start=1 FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:B1NLP9" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B1NLP9" FT /protein_id="ABW25059.1" FT /translation="MAPQDADVTDATDYKKPPAETEQKALTIQPRSNKAPSDEELVRII FT NAAQKRGLTPAAFVQAAIVFTMESMDKGATDSTIFTGKYNTFPMKSLALACKDAGVPVH FT KLCYFYTKPAYANRRVANQPPARWTNENVPKANKWAAFDTFDALLDPYVVPSSVPYDEP FT TPEDRQVNEIFKKDNLSQAASRNQLLGTQASITRGRLNGAPALPNNGQYFIEAPQ" XX SQ Sequence 6095 BP; 1639 A; 1817 C; 1396 G; 1243 T; 0 other; ccaagaaccc aacgggtgcg gccactatgt ctatcgaggc agttttcgac caggttacag 60 acccatcgct ccgcgctgtg attcaggagg aagcgcacaa acagatcaaa gatttgttta 120 aggaaacgac gcgctgcaat ccctactcca taccgcaagc tgggcgcaag gttttggaaa 180 agtacgccat cccctacaac ccgtactctc tcaaactaca ccctcacgca gcctcaaaag 240 cgttcgaagt gtcgctctac gaggctgcgt cttactacct cccctccacc tcttcaactc 300 ctgtcacatt catgttcaca aaaccgggca agctcagatt ctttaggcgc cgaggtcacg 360 tggacaaatt cgttaatgct gacatagttc caagagactt ggctagatac ccacgcgaca 420 cagtctacag ttatctgccc gagatcacca ccacacacgc tttcattggt gacactctac 480 accacttcgg tgaggacttt ctcgtcgagg ttttctccag gtcaccgaaa ctagaagtgc 540 ttctagccac catggtatta ccacccgagg ccttttacag aatggagtcc cttcatccct 600 cggtctacac tctcctctac agggacgacc gattcctata cctgcctggt ggcctgtctg 660 gtggtgagta cgaacatcgc tataaggacc taaactggct aacatttggc acagttacgc 720 gcggcgggac cactatcaca ggagaacgca ttgagactaa ggccgcgaat catcttttcc 780 tcttcagacg agggcgacta gagacaccaa aattccgctc attcgacatg cccgagccta 840 tggtcctgct tcccaaggtt ttccgccccg caaaatacaa tgtacagaag ccaattcccc 900 gggagaaagc aaacaaatgg ttgatgtacg ttaaatccat cggcaatgcc accattcgtg 960 acgtatgggc caagctgagg caaaccatag ccaatgcaga cattggactc ttctcgccca 1020 ctgagctcgt gcatctcacg aattacttcc tgctcctggg ccggcttgac tcacacaact 1080 ccttcgacca agtactggcc gacagtgtgc tgaaagcatg gttcagacca atggtcgcaa 1140 agcttcagga gatcaagcac aaactcatgg ggcagaccca attcatgcaa ctctgccaag 1200 cgctagagat gacggaggtg gacctcgttt ttgaggtccg ggactccaag actccccaca 1260 aacaagctgt gccgttggac cgtgaaattg aaaacgcttt gttggaagga gtctcatcgg 1320 agccaactta cacggaaacc gaaggcgttg ctgatagtcc acttcccccc ccaatgcaaa 1380 ctgcagccga gccgtccgcg acctcagacg agcccgagag ctctagctcg cgtgaaattg 1440 agcaccaacc ggcgcctgag atcacgcttg acgaggaaga acctcagcga gacgatctgc 1500 cttgggacgc ttggagaaca caattaaggg cgcttggctt tgaggcctct gaaaggcagt 1560 ttgacccgga cggtgaactg atctctccta tcctgagcac ccgaaggtta cctaagactc 1620 ccatagacac aacactctac gccacgctag acaagattgc acgctgccca actttctaca 1680 agcctgacac agatcgcgcg cagacttacg ctcgcgatgt catggcgggg aaaaccagtg 1740 ccattctcaa gcaacaaccc tttgagtgga aaaccacgct caaacgcaag actaaagagg 1800 aaccgaagga aattcacctt gcggtgttgc atggtgccgg cgggtcgggc aaatcctacg 1860 cgctgcagga atttatgcgg aacaactctg acacaccgat tacggtcatc ctgccgacta 1920 acgagctcag ggccgactgg aagaaaaaat tgcccgccca cgacaaagac acatttatga 1980 catacgaaaa cgcgctcttg tgccctcgtg gagacatctt cattatggac gattacacaa 2040 aattgcccag gggctacatt gaggctttcg tgcagaatgc acctgccctc tcacttctga 2100 tactcaccgg tgaccccaac caagccgaac actttgagac cactgaggat aatgaaatta 2160 acagcctcgc ccccgcctca gtggtcttcg gcaagttctc taggtaccac ataaatgcca 2220 cacaccgcaa ccccagaaac ttggcaaacg ccctcggcgt ttactccgag acgcccgggg 2280 aggtcaaagt gctttacacg aggaacatca agaccggtta tcacaatctc gtgccctcac 2340 aaatgaagat gagaaactac gcctcactcg ggcagcgagc gtccacctat gcgggttgtc 2400 aggggatcac tgcgccccgc gttcaaatca tcctagactc cgacacaccc cggtgcacca 2460 ggcaagtcat gtacactgcg ctttcaaggg ccacgacgga agtggtgctc tgcaacacga 2520 tgccggatga gaaaagcttt ttccagaagg ttgaagcaac accgtacctc aaagccatcc 2580 tcaacctcaa caaagagatt aaagtcactg agggtgactt gacagaagaa ccgccgaggg 2640 agcccgctcc tcccaccaca cacttgcctg ttgaaaacag aattattctt aatgaggccc 2700 tagtcgaacc gctgcccgac aaacatgacc gcgagatcta ctccaactcc actggctttt 2760 caaactgcat acagactcaa gacccgtaca tccaagcctt ccaacatcag caagccaagg 2820 acgagacatt gttctgggca accgtcgaga agaggctcgc agcatccacg ccgaaggaca 2880 actggacaga attcaagacc aagagacctc tgggtgacgt gctttggctc gcgtacaagc 2940 gggcgatgat gctcccagat gagcccatca aatttaaccc agagctctgg tgggcatgtg 3000 cagacgaggt gcaaaagacc tacctctcca agcccataca cgcgctcaag aacggaattc 3060 ttcggcaatc acccgacttt gactggaaca aactgcagat tttcctcaag tcacagtggg 3120 ttaagaaaat tgacaaaatc gggaaaattg acgtcaacgc tggacagacg attgccgcct 3180 tttaccaacc aaccgttatg ctgtttggaa ccatggcgag atacatgcgc cgcatccgcg 3240 acacttatca acccggcgaa atactcatca attgcgagaa gaaccagaag cacatttcga 3300 agtgggtcga gagcaattgg aaccaccgcc tacccgctta caccaatgac ttcactgctt 3360 acgaccaaag ccaggacggg gctatgttac agtttgaggt actgaaagcc ctgcaccatg 3420 atatccctca tgaggttgtg gaagcctacg tagcccttaa actcaactca aaaatgtttc 3480 tgggcacact ggcgattatg agattaactg gtgagggacc caccttcgac gctaacacag 3540 agtgcaacat tgcttacaca cacgcccggt tcgagatccc aaaggacgtg gcgcaaatgt 3600 acgcgggtga cgactgtgcg ctcaactgca ggcccgttga acggcagtcc ttcttgcctc 3660 ttgtggagaa attcaccctg aaatcaaaac ccaaagtatt tgagcaaaaa gttgggtcat 3720 ggcctgagtt ctgcggcaat ctgatcaccc cacggggcta cctcaaggat cccatgaagc 3780 tacaacactg cctgcaactg gcacagagga agaaaccatc cgaacctggg tcgctcaaag 3840 acgttgctga gaactacgct atggacttgc tacccacata cgagctaggt gatgcactct 3900 acgaaatctt cgacgagaga caaatgaacg cgcactatca gtcggtcagg acgcttatca 3960 catgcgccca caccaaagtc ctccgagtgg cacaggcact tcaggaagac tgctccttct 4020 ttagctccat ctaacaggtt ttgagttagg ctaactccac tgacgaatta aataacaatg 4080 gatagtgaaa tagttgaacg actaacaaag cttggtttcg tcaagacttc acacacgcac 4140 atcgctggcg agcccctcgt gattcatgct gttgctgggg ccggtaaaac caccctcctt 4200 cggtccttac ttgaattacc gggcgtggaa gtcttcacag gcggggagca cgatcctcca 4260 aatttgtcag ggaaatatat ccgctgcgct gcaccccctg tggccggtgc atacaacatt 4320 ctcgacgagt accccgcgta cccaaattgg cgatcgcaac cctggaacgt cctaatcgcc 4380 gacaacctac aatacaaaga acccacagct cgcgcccact acacatgcaa tcgcactcac 4440 cgcctggggc agctcactgt cgacgctttg tgtagggttg gtttcgacat caccttcgcc 4500 ggcacgcaga ctgaagacta cggattccag gaaggccatc tctacaccag tcaattttac 4560 ggacaggtca tttcacttga cacgcaggcc cataagatcg ctgtgcgcca cggacttgca 4620 cccctgtccg ctttagaaac ccgggggctg gaatttgatg agaccactgt gataacgact 4680 aaaacctcgc tggaggaagt gaaggatagg cacatggtct atgtcgctct cacacggcac 4740 aggcgcacct gccatctcta caccgctcac tttgcgccct ccgcctgaca acacgaaagc 4800 catactaact atagctatag gaatagccgc ctccctcgtc tttttcatgc tcacacgcaa 4860 caatctgcca cacgtcggtg ataacatcca ctcactaccc cacggaggaa gttacattga 4920 cggtaccaag tccatcaact accgcccacc tgcgtcacgc tacccctcat ctaacttact 4980 cgctttcgct ccaccaatac tcgccgcagt gctctttttc ctcacacagc catatctagc 5040 taccagacga tccaggtgcg ttcggtgctt cgttgtccac ggcgcatgca cgaatcacac 5100 ctagttgtta tattagcgct gttactttta gctctgtggt gtcttagcac tcgacccgtt 5160 caaccatcgt gccatgtcga aatcaacggc cactccatca tcgtcaccgg aaactgctgg 5220 cactccactc aacgaccgca ttgagggtgt tagggtaacc aacatcagtg aagagaaaca 5280 acccacctcg agtgtgacct catcatttca ggacacaatg gcaccacaag atgccgacgt 5340 cactgatgcg acggactaca agaaaccgcc tgctgaaact gagcagaagg cactcaccat 5400 tcaaccacgg tcaaacaagg cgcccagtga cgaggagttg gtacgcatca tcaacgcggc 5460 gcagaagcga ggcctcacac ccgcggcctt tgttcaagca gctatagtct tcaccatgga 5520 atccatggac aagggcgcca ccgactccac gattttcacg ggaaaataca acactttccc 5580 aatgaaaagt ctggcgctag cttgcaaaga tgctggcgtg cccgtgcaca aactttgcta 5640 cttctatacc aagccggctt acgcgaaccg tagggtcgcc aaccagccgc ctgctcgctg 5700 gaccaacgag aatgtgccca aagctaacaa gtgggcggct ttcgacacct tcgacgcact 5760 tctcgaccca tacgtagtcc catcctctgt accgtacgat gagcccacgc cagaggatcg 5820 ccaagtcaat gagattttca agaaggacaa tttgagtcag gcagcatcca gaaaccaact 5880 cctaggaacg caagcctcca tcacgcgcgg gagactcaac ggcgcaccag cactaccaaa 5940 caacgggcag tacttcatcg aggcacctca gtgatcagta gtatgatacc aataaataaa 6000 tcgggcgaat ccgcgcctcc tgactatggg caggtttacg gaccaagctg tatcgagata 6060 cgacctaaca gtaacgcagc taaggggtga atgca 6095 //