ID EF630359; SV 1; linear; genomic RNA; STD; VRL; 6188 BP. XX AC EF630359; XX DT 06-MAR-2008 (Rel. 95, Created) DT 06-MAR-2008 (Rel. 95, Last updated, Version 1) XX DE Foxtail mosaic virus clone p9, complete genome. XX KW . XX OS Foxtail mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6188 RX DOI; 10.1007/s00705-007-1057-3. RX PUBMED; 17955161. RA Bruun-Rasmussen M., Madsen C.T., Johansen E., Albrechtsen M.; RT "Revised sequence of foxtail mosaic virus reveals a triple gene block RT structure similar to potato virus X"; RL Arch. Virol. 153(1):223-226(2008). XX RN [2] RP 1-6188 RA Bruun-Rasmussen M., Madsen C.T., Johansen E., Albrechtsen M.; RT ; RL Submitted (23-MAY-2007) to the INSDC. RL Genetics and Biotechnology, University of Aarhus, Faculty of Agricultural RL Sciences, Thorvaldsensvej 40, Frederiksberg C DK-1871, Denmark XX DR MD5; dd193d61b27c7fcd754070485da38d1d. XX FH Key Location/Qualifiers FH FT source 1..6188 FT /organism="Foxtail mosaic virus" FT /mol_type="genomic RNA" FT /clone="p9" FT /db_xref="taxon:12179" FT CDS 81..4088 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:B1NLP4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B1NLP4" FT /protein_id="ABW25048.1" FT /translation="MSIEAVFDQVTDPSLRAVIQEEAHKQIKDLFKETTRCNPYSIPQA FT GRKVLEKYAIPYNPYSLKLHPHAASKAFEVSLYEAASNYLPSTSSTPVTFMFTKPGKLR FT FFRRRGHVDKFVNADIVPRDLARYPRDTVYSYLPEITTTHAFIGDTLHHFGEDFLVEVF FT SRSPKLEVLLATMVLPPEAFYRMESLHPSVYTLLYRDDRFLYLPGGLPGGEYEHRYKDL FT NWLTFGTVTHGGITITGERIETKAANHLFLFRRGRLETPKFRSFDMPEPMVLLPKVFRP FT AKYNVQKPIPREKANKWLMYVKSIGNATIRDVWAKLRQTIANADIGLFSPTELVHLTNY FT FLLLGRLDSHNSFDQVLADSVLKAWFRPMVAKLQEIKHKLMGQTQFMQLCQALEMTEVD FT LVFEVRDSKTPHKQAVPLDREIENVLLEGVSSEPTYTETEGVADSPLPPPMQTAAEPSA FT TSDEPESSSSREIEHQPAPEITLDEEEPQRDDLPWDAWRTQLRALGFEASERQYDPDGE FT LISPILSTRRLPKTPIDTTLYATLDKIARCPTFYKPDTDRAQTYARDVMAGKTGAILKQ FT QPFEWKTTLKRKTKEEPKEIHLAVLHGAGGSGKSYALQEFMRNNSDTPITVILPTNELR FT ADWKKKLPAHDKDTFMTYENALLCPRGDIFIMDDYTKLPRGYIEAFVQNAPALSLLILT FT GDPNQAEHFETTEDNEINSLAPASVVFGKFSRYHINATHRNPRNLANALGVYSETPGEV FT KVLYTRNIKTGYHNLVPSQMKMRNYASLGQRASTYAGCQGITAPRVQIILDSDTPRCTR FT QVMYTALSRATTEVVLCNTMPDEKSFFQKVEATPYLKAILNLNKEIKVTEGDLTEEPPR FT EPAPPTTHLPVENRIILNEALVEPLPDKHDREIYSNSTGFSNCIQTQDPYIQAFQHQQA FT KDETLFWATVEKRLAASTPKDNWTEFKTKRPLGDVLWLAYKRAMMLPDEPIKFNPELWW FT ACADEVQKTYLSKPIHALKNGILRQSPDFDWNKLQIFLKSQWVKKIDKIGKIDVNAGQT FT IAAFYQPTVMLFGTMARYMRRIRDTYQPGEILINCEKNQKHISKWVESNWNHRLPAYTN FT DFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPT FT FDANTECNIAYTHARFEIPKNVAQMYAGDDCALNCRPVERQSFLPLVEKFTLKSKPKVF FT EQKVGSWPEFCGNLITPRGYLKDPMKLQHCLQLAQRKKPSEPGSLKDVAENYAMDLLPT FT YELGDALYEIFDERQMNAHYQSVRTLITCAHTKVLRVAQALQEDCTFFSSI" FT misc_RNA 4116..6161 FT /note="subgenomic RNA1" FT CDS 4132..4842 FT /codon_start=1 FT /product="26K protein" FT /note="ORF2" FT /db_xref="GOA:P22169" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P22169" FT /protein_id="ABW25049.1" FT /translation="MDSEIVERLTKLGFVKTSHTHIAGEPLVIHAVAGAGKTTLLRSLL FT ELPGVEVFTGGEHDPPNLSGKYIRCAAPPVAGAYNILDEYPAYPNWRSQPWNVLIADNL FT QYKEPTARAHYTCNRTHRLGQLTVDALRRVGFDITFAGTQTEDYGFQEGHLYTSQFYGQ FT VISLDTQAHKIAVRHGLAPLSALETRGLEFDETTVITTKTSLEEVKDRHMVYVALTRHR FT RTCHLYTAHFAPSA" FT CDS 4775..5158 FT /codon_start=1 FT /product="14K protein" FT /note="ORF3" FT /db_xref="GOA:P22170" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P22170" FT /protein_id="ABW25050.1" FT /translation="MSLSHGTGAPAISTPLTLRPPPDNTKAILTIAIGIAASLVFFMLT FT RNNLPHVGDNIHSLPHGGSYIDGTKSINYRPPASRYPSSNLLAFAPPILAAVLFFLTQP FT YLATRRSRCVRCFVVHGACTNHT" FT CDS 5140..5298 FT /codon_start=1 FT /product="6K protein" FT /note="ORF4" FT /db_xref="GOA:P22171" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:P22171" FT /protein_id="ABW25051.1" FT /translation="MHESHLVVILALLLLALWCLSTRPVQPSCHVEINGHSIIVTGNCW FT HSTQRPH" FT CDS 5228..6028 FT /codon_start=1 FT /product="coat protein" FT /note="ORF5A; amino-terminal extension of coat protein" FT /db_xref="GOA:B1NLP8" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B1NLP8" FT /protein_id="ABW25052.1" FT /translation="MSKSTATPSSSPETAGTPLNDRIEGVRVTNISEEKQPTSSVTSSF FT QDTMAPQDADVTDATDYKKPPAETEQKALTIQPRSNKAPSDEELVRIINAAQKRGLTPA FT AFVQAAIVFTMESMDKGATDSTIFTGKYNTFPMKSLALACKDAGVPVHKLCYFYTKPAY FT ANRRVANQPPARWTNENVPKANKWAAFDTFDALLDPYVVPSSVPYDEPTPEDRQVNEIF FT KKDNLSQAASRNQLLGTQASITRGRLNGAPALPNNGQYFIEAPQ" FT misc_RNA 5324..6161 FT /note="subgenomic RNA2" FT CDS 5372..6028 FT /codon_start=1 FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:B1NLP9" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B1NLP9" FT /protein_id="ABW25053.1" FT /translation="MAPQDADVTDATDYKKPPAETEQKALTIQPRSNKAPSDEELVRII FT NAAQKRGLTPAAFVQAAIVFTMESMDKGATDSTIFTGKYNTFPMKSLALACKDAGVPVH FT KLCYFYTKPAYANRRVANQPPARWTNENVPKANKWAAFDTFDALLDPYVVPSSVPYDEP FT TPEDRQVNEIFKKDNLSQAASRNQLLGTQASITRGRLNGAPALPNNGQYFIEAPQ" XX SQ Sequence 6188 BP; 1693 A; 1838 C; 1405 G; 1252 T; 0 other; gaaaactctt ccgaaaccga aactgactga aactacctcg accgacctta gaacccaaga 60 acccaacggg tgcggccact atgtctatcg aggcagtttt cgaccaggtt acagacccat 120 cgctccgcgc tgtgattcag gaggaagcgc acaaacagat caaagatttg tttaaggaaa 180 cgacgcgctg caatccctac tccataccgc aagctgggcg caaggttttg gaaaagtacg 240 ccatccccta caacccgtac tctctcaaac tacaccctca cgcagcctca aaagcgtttg 300 aagtgtcgct ctacgaggct gcgtctaact acctcccctc cacctcctca actcctgtca 360 cattcatgtt cacaaaaccg ggcaagctca gattctttag gcgccgaggt cacgtggaca 420 aattcgttaa tgctgacata gttccaagag acttggctag atacccacgc gacacagtct 480 acagttatct gcccgagatc accaccacac acgctttcat tggcgacacc ctacaccact 540 tcggtgagga ctttctcgtc gaggttttct ccaggtcacc gaaactagaa gtgcttctag 600 ccaccatggt attaccaccc gaggcctttt acagaatgga gtcccttcat ccctcggttt 660 acactctcct ctacagggac gaccgattcc tatacctgcc tggtggcctg cctggcggtg 720 agtacgaaca tcgctataag gacctaaact ggctaacatt tggcacagtt acgcacggcg 780 ggatcactat cacaggagaa cgcattgaga ctaaggccgc gaatcatctt ttcctcttca 840 gacgagggcg actagagaca ccaaaattcc gctcattcga catgcccgag cctatggtcc 900 tgcttcccaa ggttttccgc cccgcaaagt acaatgtaca gaagccaatt ccccgggaga 960 aagcaaacaa atggttgatg tacgttaaat ccatcggcaa tgccaccatt cgtgacgtat 1020 gggctaagct gaggcaaacc atagccaatg cagacattgg actcttctcg cccactgagc 1080 tcgtgcatct cacgaattac ttcctgctcc tgggccggct tgactcacac aactccttcg 1140 accaagtact ggccgacagt gtgctgaaag catggttcag accaatggtc gcaaagcttc 1200 aggagatcaa gcacaaactc atggggcaga cccaattcat gcaactctgc caagcgctag 1260 agatgacgga ggtggacctc gtttttgagg tccgggactc caagactccc cacaaacaag 1320 ctgtgccgtt ggaccgtgaa attgaaaacg ttttgttgga aggagtctca tcggagccaa 1380 cttacacgga aaccgaaggc gttgctgata gtccacttcc ccccccaatg caaactgcag 1440 ccgagccgtc cgcgacctca gacgagcccg agagctctag ctcgcgtgaa attgagcacc 1500 aaccggcgcc tgagatcacg cttgacgagg aagaacctca gcgagacgat ctgccttggg 1560 acgcttggag aacacaatta agggcgcttg gctttgaggc ctctgaaagg cagtatgacc 1620 cggacggtga actgatctct cctatcctga gcacccgaag gttacctaag actcccatag 1680 acacaacact ctacgccacg ctagacaaga ttgcacgctg cccaactttc tacaagcctg 1740 acacagatcg cgcgcagact tacgctcgcg atgtcatggc ggggaaaacc ggtgccattc 1800 tcaagcaaca accctttgag tggaaaacca cgctcaaacg caagactaaa gaggaaccga 1860 aggaaattca ccttgcggtg ttgcatggtg cgggcgggtc gggcaaatcc tacgcactgc 1920 aggaatttat gcggaacaac tctgacacac cgattacggt catcctgccg actaacgagc 1980 tcagggccga ctggaagaaa aaattgcccg cccacgacaa agacacattt atgacatacg 2040 aaaacgcgct cttgtgccct cgtggagaca tcttcattat ggacgattac acaaaattgc 2100 ccaggggcta cattgaggct ttcgtgcaga atgcacctgc cctctcactt ctgatactca 2160 ccggtgaccc caaccaagcc gaacactttg agaccactga ggacaatgaa attaacagcc 2220 tcgcccccgc ctcagtggtc ttcggcaagt tctctaggta ccacataaat gccacacacc 2280 gcaaccccag aaacttggca aacgccctcg gtgtttactc cgagacgccc ggggaggtta 2340 aagtgcttta cacgaggaac atcaagaccg gttatcacaa tctcgtgccc tcacaaatga 2400 agatgagaaa ctacgcctca ctcgggcagc gagcgtccac ctatgcgggt tgtcagggga 2460 tcactgcgcc ccgcgttcaa atcatcctag actccgacac accccggtgc accaggcaag 2520 tcatgtacac tgcgctttca agggccacga cggaagtggt gctctgcaac acgatgccgg 2580 atgagaaaag ctttttccag aaggttgaag caacaccgta cctcaaagcc atcctcaacc 2640 tcaacaaaga gattaaagtc actgagggtg acttgacaga agaaccgccg agggagcccg 2700 ctcctcccac cacacacctg cctgttgaaa acagaattat tcttaatgag gccctagtcg 2760 aaccgctgcc cgacaaacat gaccgcgaga tctactccaa ctccactggc ttttcaaact 2820 gcatacagac tcaagacccg tacatccaag ccttccaaca tcagcaagcc aaggacgaga 2880 cattgttctg ggcaaccgtc gagaagaggc tcgcagcatc cacgccgaag gacaactgga 2940 cagaattcaa gaccaagaga cctctgggtg acgtgctttg gctcgcgtac aagcgggcga 3000 tgatgctccc agatgagccc atcaaattta acccagagct ctggtgggca tgtgcagatg 3060 aggtgcaaaa gacctacctc tccaagccca tacacgcgct caagaacgga attcttcggc 3120 aatcacccga ctttgactgg aacaaactgc agattttcct caagtcacag tgggttaaga 3180 aaattgacaa aatcgggaaa attgacgtca acgctggaca gacgattgcc gccttttacc 3240 aaccaaccgt tatgctgttt ggaaccatgg cgagatacat gcgccgcatc cgcgacactt 3300 atcaacccgg cgaaatactc atcaattgcg agaagaacca gaagcacatt tcgaagtggg 3360 tcgagagcaa ttggaaccac cgcctacccg cttacaccaa tgacttcact gcttacgacc 3420 aaagccagga cggggctatg ttacagtttg aggtactgaa agccctgcac catgatatcc 3480 ctcatgaggt tgtggaagcc tacgtagccc ttaaactcaa ctcaaaaatg tttctgggca 3540 cactggcgat tatgagatta actggtgagg gacccacctt cgacgctaac acagagtgca 3600 acattgctta cacacacgcc cggttcgaga tcccaaagaa cgtggcgcaa atgtacgcgg 3660 gtgacgactg tgcgctcaac tgcaggcccg ttgaacggca gtccttcttg cctcttgtgg 3720 agaaattcac cctgaaatca aaacccaaag tatttgagca aaaagttggg tcatggcctg 3780 agttctgcgg caatctgatc accccacggg gctacctcaa ggatcccatg aagctacaac 3840 actgcctgca actggcacag aggaagaaac catccgaacc tgggtcgctc aaagacgttg 3900 ctgagaacta cgctatggac ttgctaccca catacgagct aggtgatgca ctctacgaaa 3960 tcttcgacga gagacaaatg aacgcgcact atcagtcggt caggacgctt atcacatgcg 4020 cccacaccaa agtcctccga gtggcacagg cacttcagga agactgcacc ttctttagct 4080 ccatctaaca ggttttgagt taggctaact ccactgacga attaaataac aatggatagt 4140 gaaatagttg aacgactaac aaagcttggt ttcgtcaaga cttcacacac gcacatcgct 4200 ggcgagcccc tcgtgattca cgccgttgct ggggccggta aaaccaccct ccttcggtcc 4260 ttacttgaat taccgggcgt ggaagtcttc acaggcgggg agcacgatcc tccaaatttg 4320 tcagggaaat atatccgctg cgctgcaccc cctgtggccg gtgcatacaa cattctcgac 4380 gagtaccccg cgtacccaaa ttggcgatcg caaccctgga acgtcctaat cgccgacaac 4440 ctacaataca aagaacccac agctcgcgcc cactacacat gcaatcgcac tcaccgcctg 4500 gggcagctca ctgtcgacgc tttgcgtagg gttggtttcg acatcacctt tgccggcacg 4560 cagactgaag actacggatt ccaggaaggc catctctaca ccagtcaatt ttacggacag 4620 gtcatttcac ttgacacgca ggcccataag atcgctgtgc gccacggact tgcacccctg 4680 tccgctttag aaacccgggg gctggaattt gatgagacca ctgtgataac gactaaaacc 4740 tcgctggagg aagtgaagga taggcacatg gtctatgtcg ctctcacacg gcacaggcgc 4800 acctgccatc tctacaccgc tcactttgcg ccctccgcct gacaacacga aagccatact 4860 aactatagct ataggaatag ccgcctccct cgtctttttc atgctcacac gcaacaatct 4920 gccacacgtc ggtgataaca tccactcact accccacgga ggaagttaca ttgacggtac 4980 caagtccatc aactaccgcc cacctgcgtc acgctacccc tcatctaact tactcgcttt 5040 cgctccacca atactcgccg cagtgctctt tttcctcaca cagccatatc tagctaccag 5100 acgatccagg tgcgttcggt gcttcgttgt ccacggcgca tgcacgaatc acacctagtt 5160 gttatattag cgctgttact tttagctctg tggtgtctta gcactcgacc cgttcaacca 5220 tcgtgccatg tcgaaatcaa cggccactcc atcatcgtca ccggaaactg ctggcactcc 5280 actcaacgac cgcattgagg gtgttagggt aaccaacatc agtgaagaga aacaacccac 5340 ctcgagtgtg acctcatcat ttcaggacac aatggcacca caagatgccg acgtcactga 5400 tgcgacggac tacaagaaac cgcctgctga aactgagcag aaggcactca ccattcaacc 5460 acggtcaaac aaggcgccca gtgacgagga gttggtacgc atcatcaacg cggcgcagaa 5520 gcgaggcctc acacccgcgg cctttgttca agcagctata gtcttcacca tggaatccat 5580 ggacaagggc gccaccgact ccacgatttt cacgggaaaa tacaacactt tcccaatgaa 5640 aagtctggcg ctagcttgca aagatgctgg cgtgcccgtg cacaaacttt gctacttcta 5700 taccaagccg gcttacgcga accgtagggt cgccaaccag ccgcctgctc gctggaccaa 5760 cgagaatgtg cccaaagcta acaagtgggc ggctttcgac accttcgacg cacttctcga 5820 cccatacgta gtcccatcct ctgtaccgta cgatgagccc acgccagagg atcgccaagt 5880 caatgagatt ttcaagaagg acaatttgag tcaggcagca tccagaaacc aactcctagg 5940 aacgcaagcc tccatcacgc gcgggagact caacggcgca ccagcactac caaacaacgg 6000 gcagtacttc atcgaggcac ctcagtgatc agtagtatga taccaataaa taaatcgggc 6060 gaatccgcgc ctcctgacta tgggcaggtt tacggaccaa gctgtatcga gatacgacct 6120 aacagtaacg cagctaaggg gtgaatgcac acatcgctta taaaaaaaaa aaaaaaaaaa 6180 aaaaaaaa 6188 //