Dbfetch
ID EF620534; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC EF620534; XX DT 01-JAN-2008 (Rel. 94, Created) DT 01-JAN-2008 (Rel. 94, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus segment DNA A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Ali A., Okuda S., Natsuaki T.; RT "Molecular characterization of a begomovirus associated with yellow mosaic RT disease of Luffa acutangula in Pakistan"; RL Unpublished. XX RN [2] RP 1-2740 RA Ali A., Natsuaki T.; RT ; RL Submitted (19-MAY-2007) to the INSDC. RL Plant Pathology, NWFP Agricultural University, University Road, Peshawar, RL NWFP 25000, Pakistan XX DR MD5; ae7144eca3cbb0b56526544138d23ea4. DR EuropePMC; PMC3125359; 21676270. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA A" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /db_xref="taxon:223347" FT CDS 48..434 FT /codon_start=1 FT /product="AV3" FT /db_xref="UniProtKB/TrEMBL:A9XR93" FT /protein_id="ABU95060.1" FT /translation="MKFTLHGLFSAGGPINRLAHQVWIHKHVGSIIARISRKRSWSKVH FT ASCKISPRDRKELFPRHSRLRSCPRSHSCPPSKELWRSDQQISSFQRPHRKYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT CDS 127..465 FT /codon_start=1 FT /product="AV2" FT /db_xref="GOA:A9XR94" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A9XR94" FT /protein_id="ABU95061.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 287..1057 FT /codon_start=1 FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:Q29UD4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q29UD4" FT /protein_id="ABU95062.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(317..802) FT /codon_start=1 FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A9XR96" FT /protein_id="ABU95063.1" FT /translation="MHVFHRSCARFIVKHVKNFPKILGGSCRTTVTDQKKHNTVSMVFR FT LDVFIHPYLPQNIDRFHTKSLSYAMCESSSSSNITNAHDFANMRNIVPRFKGLHLARAF FT TSPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYFRCGR" FT CDS complement(1054..1464) FT /codon_start=1 FT /product="AC3" FT /db_xref="GOA:A9XR97" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A9XR97" FT /protein_id="ABU95064.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILQHHSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWHGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVVRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT CDS complement(1184..1603) FT /codon_start=1 FT /product="AC2" FT /db_xref="GOA:A9XR98" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A9XR98" FT /protein_id="ABU95065.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFATPQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLARLTPSDWDFLESLQNPGP" FT CDS complement(1506..2591) FT /codon_start=1 FT /product="AC1" FT /note="replicase associated protein" FT /db_xref="GOA:A9XR99" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A9XR99" FT /protein_id="ABU95066.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFCDLVSPSRAAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLVTNLDRIFQPRSEVYVSPFSISSFDRVPAELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT CDS complement(2258..2434) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A9XRA0" FT /protein_id="ABU95067.1" FT /translation="MGLRISTFSSNSKVNSSAKITDSVTWFPQVGQHISIRTFRELNQR FT QMSRSISTKTETF" XX SQ Sequence 2740 BP; 746 A; 595 C; 604 G; 795 T; 0 other; taatattacc gaatggccgc gcaaattttt aggtgggccc tcaaccaatg aaattcacgc 60 tacatggctt atttagtgcg gggggaccaa taaatagact tgctcaccaa gtttggatcc 120 acaaacatgt gggatccatt attgcacgaa tttccagaaa gcgttcatgg tctaaggtgc 180 atgctagctg taaaatatct ccaagagata gaaaagaact attccccaga cacagtcggc 240 tacgatcttg tccgagatct cattcttgtc ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaagtacgc cgacgtctca acttcgacag 360 cccctatgga gctcgtgcag ttgtccccat tgcccgcgtc acaaaagcaa aggcctggac 420 caacaggccg atgaacagaa aacccagaat gtacagaatg tatagaagtc ccgacgtgcc 480 aaggggatgt gaaggccctt gcaaggtgca gtcctttgaa tctaggcacg atgtttctca 540 tattggcaaa gtcatgtgcg ttagtgatgt tactcgagga actggactca cacatcgcgt 600 aggaaagcga ttttgtgtga aatctgtcta tgttctgggg aagatatgga tggatgaaaa 660 catcaagacg aaaaaccata ctaacagtgt tatgtttttt ttggtccgtg accgtcgtcc 720 tacaggatcc ccccaagatt ttggggaagt ttttaacatg tttgacaatg aaccgagcac 780 agctacggtg aaaaacatgc atcgcgatcg ttatcaagtc ttacggaaat ggcatgcgac 840 tgtgacggga ggaacttatg catctaagga gcaagcatta gttaggaagt ttgttagggt 900 taataattat gttgtttaca atcaacaaga ggccggcaag tatgagaatc atactgaaaa 960 tgcattaatg ttgtatatgg cctgtactca tgcatcaaat cctgtatatg ctactttgaa 1020 aatccggatc tacttttatg attcggtcac aaattaataa atatccagtt ttatatcata 1080 tgaagtccat acatcaatcg ttcgctccaa tacattatct aatacatgat aaactgctct 1140 tactacatta tatattccta ttacacctaa catatccagg tacttaagga cctgggtttt 1200 gaagactctc aagaaaatcc caatctgagg gcgtaagccg tgccagattt tgaaagttag 1260 aaaacacttg tgaagtccca gggctttccg caggttgtgg ttgaattgta tttgaatctt 1320 gatgatgtcg tgctgtgtta ggaagggcct gctgtggtgt tgcaaaattt tgaaatacag 1380 gggatttcga atttcccagg tatatacgcc actctctgct cgatccgcag tgatgtattc 1440 ccctgtgcgt gaatccgtga tcatggcagt tgatcgatat ataatacgaa caaccacacg 1500 gcagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgtgggagc gatgttttcg 1560 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat tgcccactgc 1620 ttcagtgctg catttttttc ttcgtccaga tattccttat agctgctgtt tggaccttta 1680 ttgcacagga agatagtggg aattcctcct ttaatcatga ctggctttcc gtattttgtg 1740 ttgctttgcc agtcacgctg ggcccccatg aattctttaa agtgctttag atagtgggga 1800 tcaacgtcat caatgacgtt gtaccaggca tcattgctat acacctttgg gctcagatca 1860 agatgtccac acaagtaatt gtggggtcct aagcatcgag cccacattgt tttgcccgtt 1920 ctactatccc cctctatgac tatgcttatg ggcctaaaag gccgcgcagc ggcacacaca 1980 acattggacg agacccaatc gacgagttct gccggaactc tgtcgaagga tgaaatagaa 2040 aatggagaaa cataaacctc agaacgaggt tgaaaaatgc gatctaaatt tgtaactaaa 2100 ttatgaaact gcagaacgta atcctttggt gctaattctt tcaatacttt caacgcatcc 2160 tctttatttc ctgtgttaat tgcctgagca tatgcatcgt ttgccgtctg ttgacctcca 2220 cgagcagatc gtccatcgat ctggaaaaca ccccattcta gaacgtctcc gtctttgtcg 2280 atatacttct tgacatctga cgctgattta gctccctgaa tgttcggatg gaaatgtgct 2340 gcccgacttg gggaaaccaa gtcacagaat ctgttatttt tgcactggaa tttaccttcg 2400 aattggatga gaacgtggat atgcggagac ccatcctcgt gaagctctct acagatcttg 2460 atgaatttct tcgcagttgg ggtttctagg gtttgcaatt gggaaagtgc ctcttcttta 2520 gttagagagc acttcggata tgtgaggaaa tagtttttgg catctatcct aaaacgacgt 2580 ggcggagcca tcaaacttgt cgttttgatt cagcgtccct caacttcctc tatgtaattg 2640 gcgtctggcg tcccatatat aggtaggacg ctaaatggca gaattgtaat tttgaaaaga 2700 aaattacttt aattcaaaat cctcatagcg gccattcgtt 2740 //