ID EF599605; SV 1; linear; genomic RNA; STD; VRL; 6245 BP. XX AC EF599605; XX DT 06-JUN-2007 (Rel. 92, Created) DT 31-JUL-2009 (Rel. 101, Last updated, Version 2) XX DE Pepino mosaic virus isolate 220606A1 RNA-dependent RNA polymerase (RdRp) DE gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene DE block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat DE protein (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6245 RX DOI; 10.1007/s10658-007-9255-0. RX AGRICOLA; IND44055194. RA Hanssen I.M., Paeleman A., Wittemans L., Goen K., Lievens B., Bragard C., RA Vanachter A.C.R.C., Thomma B.P.H.J.; RT "Genetic characterization of Pepino mosaic virus isolates from Belgian RT greenhouse tomatoes reveals genetic recombination"; RL Eur. J. Plant Pathol. 121(2):131-146(2008). XX RN [2] RP 1-6245 RA Hanssen I.M., Paeleman A., Wittemans L.P.F., Goen K., Lievens B., RA Bragard C., Vanachter A.C.R.C., Thomma B.P.H.J.; RT ; RL Submitted (08-MAY-2007) to the INSDC. RL Scientia Terrae Research Institute, Fortsesteenweg 30A, RL Sint-Katelijne-Waver, Antwerp 2860, Belgium XX DR MD5; 570aee77e7dea0a9bedc0f87de29ad0a. XX FH Key Location/Qualifiers FH FT source 1..6245 FT /organism="Pepino mosaic virus" FT /isolate="220606A1" FT /mol_type="genomic RNA" FT /country="Belgium" FT /db_xref="taxon:112229" FT gene <1..4272 FT /gene="RdRp" FT CDS <1..4272 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="replication" FT /db_xref="GOA:A5Z0E0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A5Z0E0" FT /protein_id="ABQ84434.1" FT /translation="VQSSICEAAYQHVRPVLKESLINCPYALNDYEADTLENLGVTINP FT HAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRYMRRAAVHKDVFVNHN FT IEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFDRCHNLKTLMATVVLP FT VEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLDWLKYSRFVGQDPLTG FT LRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPNIFHPQHVNATKPMPR FT SRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTHIVNYFAYVSELSSIN FT DYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQWKDFSYTIKTEELVIA FT THTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVEYTHFDPEFKSTVDPH FT RSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSTEHVQAVQEIESLLSNPEAA FT PILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNKASCSYLQPNKELSKPKAADN FT NLPWNSWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSDYPSSLPCELVETLRK FT IKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAFKMQHEDIVKSGVVIH FT GCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHKLPMEHIKTFEKAMIQ FT PGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYHESNNEAYIASLDEAV FT AYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHALQKCKVPILVPSQMKK FT SAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCLSRAVDSIHFINTGPN FT NSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAPVTHFPIANGNNLEKL FT ASALPEKFAREIYDKHHGHSNTIQTENPVVQLFQHQQAKDETLFWATIEARLSITTPEA FT NLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEVKNTYLAKPMANLINA FT ASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQQTVMLYGTMARYLRK FT MRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFDQSQDGAMLQFEVMKA FT KFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTECSIAYTATRFHIDNT FT VKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGDYAEFCGWTFTPGGII FT KNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYLTPDEAEQHFLAVRKL FT HKLHQGEAMRLGEKSPPRSTH" FT gene 4298..5002 FT /gene="TGBp1" FT CDS 4298..5002 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:A5Z0E1" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A5Z0E1" FT /protein_id="ABQ84435.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQNDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSPEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 4983..5354 FT /gene="TGBp2" FT CDS 4983..5354 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ABQ84436.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 5206..5454 FT /gene="TGBp3" FT CDS 5206..5454 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ABQ84437.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 5500..6213 FT /gene="CP" FT CDS 5500..6213 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q2UVL7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVL7" FT /protein_id="ABQ84438.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6214..>6245 XX SQ Sequence 6245 BP; 1980 A; 1429 C; 1136 G; 1700 T; 0 other; gtacaatcta gcatttgtga agccgcttac caacatgtta gacctgtgct caaggaatcc 60 ctaatcaact gtccttatgc gcttaatgac tatgaagcag acacccttga gaatttaggt 120 gtcacaataa acccccatgc aatccaaaca catactcatg cggcagctaa agttgtggaa 180 aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt caccttcatt 240 ttcctcaaaa gaagcaaact gagatacatg cgaagagctg ctgtacataa agatgttttt 300 gttaatcaca atatagaacc caaggatttc ttcaggtatg atgaggaatc tacatctact 360 agcttctccg tgaacaccag gatcgcttac atctccgatt ctctacattt catggaacca 420 gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat ggcaactgtt 480 gttttacctg ttgaagccat ccacaaacaa acatctttat ttccagcgat atactccatt 540 aattacaatg aagaaggttt tgagtatatc cctggttctc atggtggagg ggcatacttt 600 cataagtatg aaacattaga ctggctcaaa tactctagat tcgttggcca ggacccctta 660 actggactcc gatacaccat aaccattcaa atggtggaga gtttaggagc caaccatctt 720 ttcctcttcc aaagaggaaa tttcgaaaca cctttataca ggacgtttca aaaaaatagc 780 tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa gcccatgcca 840 agatccaggg caattcagct gtatttatat gtcaaatctg tcaataaggt gacacaaaga 900 gatatctttg cgaaagtaag gcaacttata tccacagctg aacttgaatt gtatgaccct 960 gacgaactta cacatattgt caattatttc gcatatgtct cagaactaag ctcaatcaac 1020 gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc catgcaacat 1080 gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca acttttaact 1140 gctcttcaat ggaaagactt ctcttacacc attaaaacgg aagagttagt tattgctaca 1200 cacactgaaa ttggccaggc aatctgtaaa gctgcgacca catacaaaga aagaagacaa 1260 ttgaccaatt tagtcaaaca aggcgcagta acattagctg atttcaaaga agcggaccag 1320 catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc ccaccggagc 1380 tatgaaaatg ccatcaacaa tcttggcatt gagattaatg aggacgtacc tgaaagttcc 1440 ggcactaatg aaacattgct taacaatgaa atatctttag caatgtcatc tactgaacat 1500 gtgcaagctg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc accaatattg 1560 ccccctgcac atgttaaaac atgggctagc cttgcatctg acacttcaag cactaaaaac 1620 cgtgaaatcg aagatatagt ggctaagctg gaaatacaaa gaaataaagc tagttgcagc 1680 taccttcaac caaataagga attgtcaaaa cccaaggctg ctgataacaa tctcccctgg 1740 aattcttgga tcccattgct taatgcacac ggcttcaaag gagatcaatt acaatacggc 1800 ccagatggta acttgataca gcccatccaa gacattaaca attcacagcc tagatctgac 1860 tatccgtctt ctctgccatg tgaacttgtg gaaactttga ggaaaatcaa gcgtgctgtc 1920 tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat caaaaataac 1980 agaactggca aacttctctg caaccaaagc aaagaatgga aagaaagctt tgctttcaaa 2040 atgcaacatg aagacatcgt caaatcaggt gttgtcatac atggttgcgg aggctctggc 2100 aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga ttgctgtact 2160 gttgtagtac ccactgttga acttagaaat gactgggtaa acaaactcca taaattgccc 2220 atggagcata tcaaaacatt tgagaaagca atgattcaac ctggctttcc aattgttata 2280 tttgatgatt acaccaagtt gccacctggc tacattgaag catacctatt tcaccatgcc 2340 aacactgagc ttttcatact tactggtgat tctaggcaaa gcgtgtacca tgaatctaac 2400 aatgaagcgt acattgcctc attagatgaa gctgttgcat actacgctaa ttactgcggg 2460 ttttatttaa atgctactca tagaaatgtc cgtagtttag ccaacaaact tggtgtttac 2520 agtgagaaag aaggacactt gaaaatcact tttgcttcac atgccttaca aaagtgcaaa 2580 gtgccaattt tagttccatc tcaaatgaaa aagagtgcta tgttagacat tggacataaa 2640 tccatgacct atgctggttg ccaaggttta acagcaccca aggtacaaat tctccttgat 2700 aaccacacgc aacattgctc tgacagagtt ctgtacacct gtctgtctcg tgcagttgat 2760 tccatccact tcatcaatac tggtcccaac aattcagaat tttgggataa gcttgaagca 2820 acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga aatgctcaat 2880 tctaagcctg ctgatgacag tccaactgag cctgaagcac ctgttacaca tttcccaata 2940 gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt tgctagggag 3000 atttatgaca agcatcatgg ccactccaac acaatccaaa ctgagaaccc tgtggtccaa 3060 cttttccaac atcaacaagc gaaagacgag acactctttt gggctacaat tgaagctaga 3120 ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa agatgttgga 3180 gacattctct tcttcaatta ccataatgcg atgtgcttgc ctgccgatcc tgttgacttt 3240 gaagaaaaga cctgggagat ctgtgctgct gaagtgaaaa acacttatct tgccaagccc 3300 atggccaatc ttatcaatgc ggcaagtaga caatcacccg actttgactc taataagatc 3360 tcattattcc taaagtctca atgggtgaaa aaagtggaaa aacttggagc tatcaaatca 3420 aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta tggtactatg 3480 gccaggtact taaggaaaat gcggcaaaga ttccagccaa aacacatatt catcaattgt 3540 gaaaccacaa ctgatgatct caataaattt gtcaaagatg gctggaactt taacagaacc 3600 gcccaaacaa atgacttcac tgcttttgat cagtcacaag atggagcaat gctgcaattt 3660 gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg ctacatcaac 3720 atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact ttctggtgaa 3780 ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac aagattccat 3840 attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcattaga tggagttgtg 3900 agtgaaaaga aatcattcag gaagttacaa aatctactaa aactcacttc aaaaacgctg 3960 tacccaaaac aggttaaagg ggattacgct gaattttgtg gttggacttt cacaccaggg 4020 ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga agccattggc 4080 aatctgcaca cagcagccag atcttatgca attgacatga agcattcata ccaaatgggt 4140 gaccaactgc atgactacct aacccccgat gaagctgaac aacatttcct agctgtgaga 4200 aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag tccaccaaga 4260 tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa ctttgatcaa 4320 tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca ttgttgtgca 4380 cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg cataccctag 4440 cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa tttcacaagt 4500 ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtacc atctcttaga 4560 aagttttcct gaaccaaaac tagccatttt tggtgacccc tgtcagtgca cttacattga 4620 aaggttgaga acacccaact acacatcctt cagaacacac cgatttggca aatccactgc 4680 tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagcac aaaacgacac 4740 agtagaatac tttgatcctt ttgcagtgga cccctctgaa cacatttctg cttcagaaaa 4800 agaagttttg gaatttgtag gtgatcaagt tgagactaca agccctgaag aactagctgg 4860 tctcgagttt agtgaagtta ctttctactg taccacactc gctggtgctg ttcaagaaaa 4920 tcctgctaaa accttcattt cactcactag acacacttca aagctcacaa ttggtgaact 4980 aaatgccagg tctgactcct agagctgatc ttactgacac gtataaaatc attgctatag 5040 cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca gttgcaggtg 5100 ataatttgca cagactaccc tttggtggtc agtatcaaga cggaactaag aagatttctt 5160 actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc ctcatactta 5220 tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc attagccgta 5280 atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt caatcagtgc 5340 caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac acccgaagtt 5400 cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt gtgaaatcat 5460 atttgttatc tagttaaatt caaacaattt aactcaacta tggaaaacca acctacagct 5520 tctaacccat cagatgtacc accaactgct gctcaagctg gtgcccagag cccagccgac 5580 ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa atacgtgtca 5640 actgtcactt cagttgccac gcctgctgaa attgaggccc ttggcaagat ctttactgcc 5700 atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg tgcttatgct 5760 gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa ccctgctttg 5820 tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag acaattctgc 5880 atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc acctgccaac 5940 tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt ctttgatgga 6000 gtcacaaatc cagctagtct acagcctgct gatggcctaa tcaggcagcc caatgaaaaa 6060 gagcttgctg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa aatatccact 6120 ggtaattaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg cgccaacact 6180 atgtacgcaa ttgatgcacc tcctgaactt taaacactcg aaacttaatc agagtggggt 6240 tttct 6245 //