ID EF596816; SV 1; linear; genomic RNA; STD; VRL; 3295 BP. XX AC EF596816; XX DT 11-JUN-2007 (Rel. 92, Created) DT 11-JUN-2007 (Rel. 92, Last updated, Version 1) XX DE Garlic virus B1 replicase and 27 kDa protein genes, partial cds. XX KW . XX OS Garlic virus B1 OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-3295 RA Kang S.G., Koo B.J., Chang M.U.; RT "Allexivirus transmitted by eriophyid mites in garlic plants"; RL Unpublished. XX RN [2] RP 1-3295 RA Kang S.G., Koo B.J., Chang M.U.; RT ; RL Submitted (08-MAY-2007) to the INSDC. RL School of Biotechnology, Yeungnam University, Molecular Genetics RL Laboratory, 319 Biotechnology, Gyeongsan 712-749, Republic of Korea XX DR MD5; 1505ecf73334ceb9362d411991523049. DR EuropePMC; PMC2943576; 20644968. XX FH Key Location/Qualifiers FH FT source 1..3295 FT /organism="Garlic virus B1" FT /mol_type="genomic RNA" FT /country="South Korea" FT /db_xref="taxon:446132" FT CDS <1..2464 FT /codon_start=2 FT /product="replicase" FT /db_xref="GOA:A6N2H6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A6N2H6" FT /protein_id="ABQ96641.1" FT /translation="DLLTSWVALAENAKRNVGLIVIHGAGGAGKSRALQELMRNGLVDT FT NEVNIIVPTINLAVDWKKKLPSVDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYVDAY FT LAIKFNVEMVILTGDQRQSVFHNDKKDSQIALLSSNTDHFKRYCDYYINATHRQPRRLA FT NPIKVHAERETGGAVKHATLIPTNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHL FT TIVLDKDTPLCSDEVLYTALSRASETITFVNTHSNNKDFLAKLDSTPYLKTLISGVRED FT EQAGKDNTPPEPVVRDGPTKTHIPVANDKIQLDDKIEAMEDKDTRELWSGEEKTNLMQT FT QDPTIQLFPHQQAKDEALFKITINERIRLAAPETNRKALKDTINAGDLLFEAYASFMNV FT PRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFPDNAIALFNKSQWVKKL FT EKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFVMCEKTPEQFNSFVL FT TKWDFSRPNYTYDYTQYDQSQDAAFLNFELRKARHFGLPDEVVDFYAFVKTHAKTFLGN FT LAVMRLSGEGPTFDANTECNIAYDALRFQLDPTVNACYAGDDLVRDKACDERPGWKYSE FT PLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYL FT FAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIQDPRAI FT KVSTFESDRVILPLEIIDDHFTFDSRSDRNDMTTANNQQTSESNVPANQADYGGTLLTD FT MFPDIARL" FT CDS 2560..>3295 FT /codon_start=1 FT /product="27 kDa protein" FT /db_xref="GOA:A6N2H7" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A6N2H7" FT /protein_id="ABQ96642.1" FT /translation="MFPNVFEMKTSLLIQLLTNCGFQRTTVPLEEPIVIHGVPGCGKST FT LIKTLITHQSVAAYTLGIPYGKTLAHPGIQRPTDTCDNQEVETRILDEYQLGLKVDLEP FT FNVLIGDPFQGHSTYRAHFVKTFSHRVPRPICEFLNSLGYDIQGDKEGSLKFLPVFQHY FT SKGPKGVIIHLGPISCQLTQTYRVPSKTPSEVQGLEFKEVTLVFHSSELPGNSEAFFIA FT ATRASECLNIITDPAPPQLSTQT" XX SQ Sequence 3295 BP; 991 A; 820 C; 726 G; 758 T; 0 other; agacttgtta acctcatggg tagcattagc cgaaaatgcg aagaggaatg ttgggctcat 60 cgtcattcac ggagctggtg gggcagggaa aagtagggcc ctgcaagagc tgatgcggaa 120 tgggttagta gacaccaatg aggtcaatat catcgtacca actattaacc ttgccgttga 180 ctggaagaag aagctaccca gtgtggaccc gcggaggatc atgacatttg aaaaagcatg 240 cgagcgagaa gggaagtcaa ttgtcataat ggacgactat ggaaaactcc cggcgggtta 300 cgttgacgca tacttagcca tcaaattcaa tgtcgaaatg gtcatcctaa ctggtgacca 360 acgacagtct gtcttccaca acgataagaa agactcacag attgccctct tgagttccaa 420 cacagaccat ttcaagcgat actgtgacta ctacattaac gctacccacc gacaaccccg 480 gagacttgcc aacccaatta aagtgcacgc agaaagagaa acggggggcg ctgttaaaca 540 tgccactctt atacccacca acgcaatgac gcttgtgcca gcattcagaa gccaatcatt 600 gcttacagac ttgggcaggc aggcgatgac atatgctggc tgccaagggc ttacgttacc 660 acatctgaca atagtgctgg acaaagacac tcctttgtgc tctgatgaag tgttgtacac 720 agcattatca agagcgtcgg aaacaataac gtttgtgaac acgcactcta acaataaaga 780 ctttctggcc aaactagact ctacgcccta tctcaaaacc ctaatttcgg gagtgcgaga 840 agatgaacaa gcagggaagg acaacacacc accagaacca gtagtacgtg atggtcctac 900 caaaacccac attccagtgg ccaacgacaa gatacagctg gacgacaaga tagaggccat 960 ggaggacaag gacaccaggg aattatggag tggagaggag aaaaccaacc tcatgcaaac 1020 acaagacccg accatccaat tattcccgca ccagcaagcg aaagacgagg ccttgttcaa 1080 aatcacaata aatgaacgga tcaggctagc tgcaccggag acaaatcgca aagctctcaa 1140 agatacaatc aacgcaggcg atttgctgtt tgaagcttat gcgagcttca tgaatgtgcc 1200 tcgagaaact cagcctttcg ataagagatt gtgggcacat tgtagacaat tggcattacg 1260 tacgtatcta tcaaaaccga cctcaaatct tcagcaagga gcgcaacgtc aagaccctga 1320 tttccctgac aacgctatcg cattgtttaa caagtcgcaa tgggttaaga agcttgagaa 1380 agtgggttgc cgatttaagg ctggacaaac tatatctgcc ttcaaacaat caactgtttt 1440 gctcactacc accatggctc tctacctacg taaaaagagg gagggacacc aacccgacaa 1500 tgtttttgtg atgtgcgaaa agacaccaga acagtttaat tcattcgtgc tcaccaagtg 1560 ggatttctcg cgacccaact acacgtatga ttacactcaa tatgatcaat cacaagatgc 1620 tgcattcctc aactttgagc tgaggaaagc tcgacacttt ggattaccgg acgaggtagt 1680 tgacttctac gcattcgtca aaacgcatgc aaaaacgttc cttggaaatc tagctgtcat 1740 gaggctgagc ggggaggggc caacatttga tgctaacact gaatgcaaca tagcctatga 1800 cgccctccgt tttcaacttg atccgacggt gaatgcctgt tacgcagggg atgacttggt 1860 gcgtgacaag gcttgtgacg agcgacccgg gtggaaatat tctgagccac tcttctccct 1920 gaaggccaaa ccactagtca caaacaaacc agacttctgc ggatggaggc taactaaata 1980 tggaattgtt aagtctccgg tgcaactata tcagtcgctg cagctcgctc tgcgtcttgg 2040 caaagtggaa gaagttaaac gaagctatgc aatagactac ctcttcgcct ataggttagg 2100 tgaccaatta tatgacatat ttgacgaaga tgaattggct aagcatcagc tagtgactcg 2160 aactctcatc aagaagggaa tgcagccacc cagttcagga gaacacttac ccactttcca 2220 tgtgacatca gacagactca tccaagatcc tcgggcaatc aaggtatcta ctttcgaatc 2280 agacagagtc attttgcctc ttgagattat tgacgatcac ttcacatttg atagcagatc 2340 ggaccgtaat gacatgacca ctgcgaacaa tcagcaaacg tctgaatcaa atgttcccgc 2400 gaatcaagca gactatggag gcacgctgtt aactgacatg ttccctgaca tcgccaggct 2460 ttaactagca tttaacaatt taggctgaca ttagcatagc ttagcactga ccttagtcta 2520 gtctctaatt tagacattca acgaccatgt ggcttagtta tgtttcctaa tgtgtttgaa 2580 atgaaaacct ctctgctcat acaactactc acgaactgcg ggttccaacg caccacagta 2640 ccattggagg agcctattgt tatccacggt gtgccaggct gtgggaaatc tacactcatt 2700 aaaacgttga tcacacatca atctgttgcg gcctacacct tgggaatacc atacggtaaa 2760 acacttgccc atccaggcat tcaacggccc actgatacct gtgacaatca agaggtggaa 2820 actcgaattc tggacgaata ccaacttggc ttgaaggttg atcttgaacc ctttaacgtt 2880 ctcataggag acccattcca aggtcattcc acataccgcg cacattttgt taagaccttc 2940 tctcaccgag taccacgtcc aatctgcgaa ttcctgaact cactcggcta cgacattcaa 3000 ggagataagg agggcagtct caaattttta ccagtgttcc aacactatag caagggacca 3060 aagggcgtga ttatccatct tggaccaatc tcttgccagc ttacgcagac atacagggtt 3120 ccatcaaaga caccatctga ggtgcaaggt ctagagttta aagaagttac cctcgttttc 3180 cactccagcg aactgcctgg aaattctgag gcattcttta tagccgccac acgggcaagc 3240 gagtgtctca acatcatcac tgacccagcg ccgccgcaac tgagcactca aaccg 3295 //