ID   EF593023; SV 1; linear; genomic RNA; STD; VRL; 2220 BP.
XX
AC   EF593023;
XX
DT   06-JUN-2007 (Rel. 92, Created)
DT   06-JUN-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Amaranthus segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2220
RX   PUBMED; 15745046.
RA   Srivastava A., Chandra G., Raj S.K.;
RT   "Molecular characterization of a strain of cucumber mosaic virus based on
RT   coat protein and movement protein genes";
RL   Acta Virol. 48(4):229-239(2004).
XX
RN   [2]
RP   1-2220
RA   Raj S.K., Srivastava A., Kumar S.;
RT   ;
RL   Submitted (07-MAY-2007) to the INSDC.
RL   Molecular Virology Lab, National Botanical Research Institute, Rana Pratap
RL   Marg, Lucknow, U.P. 226 001, India
XX
DR   MD5; a65b2e3bade12e09d9e0290987b24b0e.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC4188193; 25674612.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2220
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Amaranthus tricolour"
FT                   /lab_host="Nicotiana tabacum cv. White Burley"
FT                   /isolate="Amaranthus"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /note="subgroup: Ib"
FT                   /db_xref="taxon:12305"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /product="movement protein 3a"
FT                   /note="movement of the virus in infected plants"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q918E1"
FT                   /protein_id="ABQ84190.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSNDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADIAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMEIVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNGLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTDSKINQNARSESEDLNVESPPVAIGSSSASRSETFRPQEVNGL"
FT   CDS             1262..1918
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein; encapsidation; cell to cell movement
FT                   and aphid transmission"
FT                   /db_xref="GOA:Q9PY71"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9PY71"
FT                   /protein_id="ABQ84191.1"
FT                   /translation="MDKSESTSAGRNRRRHSRRGSRSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCNPGYTFTSITLRPPKIDKGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSSVWVTVRKIPASSDLSVSAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSVMRADIGDMRKYAVLMYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2220 BP; 506 A; 514 C; 536 G; 664 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgctg        60
     tccgcacatt tgagtcgtgc tgtccgcaca tttttatttc agtgtgttag attcccgagg       120
     tatggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctaa       180
     cgatctgcag aagatattat ttagccctga agccattaag aaaatggcta ctgagtgcga       240
     cctaggccgg catcattgga tgcgtgctga tattgcgata tcagtccggc ccctcgttcc       300
     cgaagtaacc catggtcgta ttgcttcctt ctttaagtct ggatatgatg tcggtgaatt       360
     gtgctctaaa ggatatatga gcgttcctca agtgttgtgt gctgttactc gaacggtttc       420
     taccgatgct gagggatctt tgagaattta cctggctgat ctaggcgaca aggagctgtc       480
     tccaatagat gggcaatgcg tttcattaca taaccatgat cttcccgctt tagtgtcttt       540
     ccaaccgacg tatgactgtc ccatggaaat tgttgggaac cgtaagcggt gttttgcagt       600
     cgttatcgaa agacatggtt atattgggta taccggcacc acagcaagcg tgtgtagtaa       660
     ttggcaagca cgattttctt ctaagaataa taactacact catatcgctg ctgggaagac       720
     tctagtactg ccattcaacg gattagctga gcaaacgaaa ccgtcagccg tcgctcgcct       780
     gttgaagtcg caattgaata atatagaatc ttcgcaatac gttttaacgg attcgaagat       840
     taatcagaat gcgcgcagtg agtccgagga tttgaatgtt gaaagccctc ccgtcgcaat       900
     cgggagttct tccgcgtccc gctccgaaac ctttagaccg caggaggtta acggtcttta       960
     gtgtcttcgt tgcgtattag tatataagta tgtgtgagtc tgtacatatt actatatcta      1020
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgatgtcgtg ttgagaagag      1080
     agcacatctg gttctagtaa acccacatca ttactttgag gttcaattcc tcttgctccc      1140
     tgatgggttc ttttactttt tcatggatgc ttctccacga gattgcgttt cgtctactta      1200
     tcttaagagt attgtgctgt gtattttctc ttttgtgttg tagtttgagt cgagtcgagt      1260
     catggacaaa tctgaatcaa ccagtgccgg tcgtaatcgt cgacgtcatt cgcgtcgcgg      1320
     ttcccgctcc gcctcctcct ccgcggatgc tacatttaga gtcctgtcgc aacagctttc      1380
     gcgacttaat aagacgttag cagctggtcg tcctactatt aaccacccaa cctttgtggg      1440
     tagtgagcgt tgtaaccctg gatacacgtt cacctcgatt accctgaggc caccgaaaat      1500
     agacaagggg tcttattatg gcaaaaggtt gttacttcct gattcagtca ctgagttcga      1560
     taagaagctt gtttcgcgca ttcaaattcg agttaatcct ttgccgaaat ttgattcttc      1620
     cgtgtgggtg acggtccgta aaattcctgc ctcctcggac ctgtccgtat ccgccatctc      1680
     tgctatgttt gcggacggag cctcaccggt actggtttat cagtatgctg catctggcgt      1740
     tcaagccaat aacaaattgt tatatgatct ttcagtgatg cgcgctgata ttggtgatat      1800
     gagaaagtac gccgtactca tgtattcaaa agacgatgcg cttgagacgg acgaactagt      1860
     acttcatgtc gacatcgagc accaacgcat tcccacgtct ggggtgctcc cagtttgaat      1920
     ccgtgttttc ccagaatcct ccctccggtc ctgtggcggg agctgagttg gtagtgttgc      1980
     tataaactgt ctgaagtcac taaacgctct gcggtgaacg ggttgtccat ccagcttacg      2040
     gctaaaatgg tcagtcgtgg agaaatccac gccagtagac ttacaagtct ctgaggtgcc      2100
     tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt ctagcacaag      2160
     atgctagttt cagggtacgg gcatcccccc actttagtgg gggtctccaa aaggagacca      2220
//