ID EF583906; SV 1; linear; genomic RNA; STD; VRL; 7599 BP. XX AC EF583906; XX DT 01-JAN-2008 (Rel. 94, Created) DT 06-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Grapevine virus B isolate 94/971, complete genome. XX KW . XX OS Grapevine virus B OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7599 RX DOI; 10.1007/s00705-007-1075-1. RX PUBMED; 17943392. RA Moskovitz Y., Goszczynski D.E., Bir L., Fingstein A., Czosnek H., RA Mawassi M.; RT "Sequencing and assembly of a full-length infectious clone of grapevine RT virus B and its infectivity on herbaceous plants"; RL Arch. Virol. 153(2):323-328(2008). XX RN [2] RP 1-7599 RA Mawassi M., Moskovitz Y., Goszczynski D.E.; RT ; RL Submitted (29-APR-2007) to the INSDC. RL Plant Pathology, The Virology Unit, Agricultural Research Organization, RL P.O.B. 6, Bet-Dagan 50250, Israel XX DR MD5; a0c63d7a1644e9f21ddcd2f54ffbba9c. DR EuropePMC; PMC4661162; 26640751. XX FH Key Location/Qualifiers FH FT source 1..7599 FT /organism="Grapevine virus B" FT /isolate="94/971" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:35289" FT 5'UTR <1..48 FT CDS 49..5178 FT /codon_start=1 FT /product="replicase" FT /note="ORF1; replication-associated protein" FT /db_xref="GOA:A9XN87" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:A9XN87" FT /protein_id="ABU62819.1" FT /translation="MSISVSSQRVASAALYQNGSTDQIEEIKKIKSSRLLSSEKHSDGL FT FDYYVPDFLRDYFARKGVHTSVHSFQAHPHPCSKMIENHILYNIISQYVDDSTLFVSCK FT ESKLRTLFMKKTNKSLSTVTQYNRLVHAKDVLRYTDPVRELDMEHLTKLSELAKRAKTA FT FIHDEVHYWSLKDFQSFLGHLGGTQRLLYSIIYPAELHIGCEQSLFPEAYEFDLLGEYI FT TWYPDGKADGSYKQPVNPWLLTTSKTVDVHGQTWTLTKVLTMGAHHLFLATRGSSITEE FT EYHYDDYTVILPKKLLQGRRRNKMPYLRSRFITSVLLYLLALKKPDPSSAVAKLRQLTN FT GEESTAEALFVAQLSRQIQETKLYDKMGNFSLKECIWSAVSAAMGNSLVYFFDKARFYN FT ESLESFILNCGPAKIEIKRIFREAVYRNKGVCPHLVSFDGAPDCVIDELYLQNIRDQDR FT AREPYSIPQSDVIGKRNCCRISLIEMGRVVHRYHQERKVEINREVVVSPLDDFKALREP FT LTGRNGVIGTTCLLLTWEADPLKRYSMGLIDAKELNLALFGNEPSSNSKSQEKKVVQSA FT FNCTCGIALPMKXLKNAVNVPTSDFTDALKGRKAAFYSRHSLSYSYNGGSHTSKGWPEW FT INEVAKDLGLGEDYDHCLAQMYEENKGINHHADDELCYTDPEVVTVNLKGTAKFHLKCG FT EECSLTLQDGDVLVMPKGFQTTHKHAVTSLSEGRVSLTFRNGINAPDEGSDKMSEYEEN FT SPELEESLDALEKNRKSLCALQILADHMRVDLAICTSMVFAKDPRAIEEVKRGGMTLGT FT FICVLKSLNLAAYIESERGCLVVNGSYKELSCYAEDDHISEWSGPRKETSFSNALSMNP FT DIRVVKYEVCEQRAKKLVNSFQEGFTGVCLNKFQKQKSSFNLVNGKELIDIHLTLGFAG FT SGKSFYPQCVLKNSSYSNTLVIVPRKALCSDWINKVHPDVKVVTYECAFRQQKKGYGLI FT VIDEIGLLPPGYIDMVHGYFCYDSLLVLGDPLQCEYHSKSDHFFLGQEESIFKKFKGHC FT NYLYKSHRLPKNQRLFEIECDGAEGGGLTFNKPRGKDLTLCASQRRKESERDVSTVGES FT QGLSANRVNILLDKDWGRVNEETVVVAFTRARKEINLIGYSSLVSNLKRSAKSMILRKI FT LSGERVSESLILSLIRRKLPECDLVKKEMLLGASDEMEEKLGGDPYLKGLLCLIDEIEE FT EEVEMPEPELLEPQRTHLPLSVGENELCISDLRAKEHREASTEAGRTDQIDEFGYKGEP FT ENPMNHKALYLYHQNSDVATFFLSVRKRLRFRDAEKNRRKFNKCRGFGAQMFGVMKQIY FT KLKQPDHLPSLERAEQDFMKKRIAKSSKLIEKHSYRSEPDWPSNYLKIFLKQQRCTKME FT KRKVDAKAGQTIACFCHAVLCRFGPLLRQTEKALRDQLGPNVMIYSQKNYTDLDKWCKN FT FVRTLDGTDSDYEAFDRSQDEKILDFEVNVLRFFLWPEEMIEEYVTLKLMMGCSMGGLA FT VMRFSGEFGTFFFNTICNMGFTCLKYSIRSDTPICYAGDDMYAPGVLVTKSEYKHVLEE FT LQLKAKVNYTRSPLFCGWRMSPYGIVKDPNLLLDRWKIAERDGSLKNCMVNYALEAIYG FT YRLGEHLFDLNIDIDAQQDLVRRIVLIKHLLPQSLQRFYSDEERECYSDGEEFNLKVRN FT EGGLDESDLTED" FT CDS 5153..5692 FT /codon_start=1 FT /product="unknown" FT /note="ORF2; p20" FT /db_xref="UniProtKB/TrEMBL:A9XN88" FT /protein_id="ABU62820.1" FT /translation="MSQTSQRIESGNLSLFLRQVEGLKLDINVLTAEYSKLGILEAQHY FT RILSLLCRINKVSVSFIVSCLIRKECAISDYREGAICLGLEEVTEGLVSGSLPSVFAIR FT KDFERGSVAFNYPWYYSITREPGSRAQYSFRNYVPGLKERISALPWMAIGFKPSAANNP FT TNPGTHSYTIECVRQA" FT CDS 5562..6527 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3; MP" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A9XN89" FT /protein_id="ABU62821.1" FT /translation="MSQVSRSESQRYPGWLSVSNRAQPTTQRTQEPTHTQLSVFDKPKE FT ELGVKGVKSAITKAKVYDLSYFERLFPTRVFKSVVHEEIRIRDGEVKQVINLMDDDFVR FT KIETTSYPYLHLGCLAICVIPHGRDLKGDVEFILRDTRFLPNSEPLMSFGCKAEKMLSA FT FSAFPGYFVSTYDLIDGFTMELEVKARGMEFEEGVRPMSIQIICVAKLCSQDFHHQYTL FT QKVKKGAYQALLNSYLVQTEDQTEYLEIQNPGKSLDRNGYTGIQVKSGGSESIDKLLVP FT PEVYETISKQFPESNGKYIPDGQDKSEYPRASMRGGHIRN" FT CDS 6466..7041 FT /codon_start=1 FT /product="coat protein" FT /note="ORF4; CP" FT /db_xref="GOA:A9XN90" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:A9XN90" FT /protein_id="ABU62822.1" FT /translation="MAKIRANIPELLCAGVTFVTDARETGFDRPMYFRTLFGYIALTGT FT SAKAQHYENVDIIGDKVGAEGLDSRGTVNISEQVKKMMGYSRAVPSGVCKGLTLRQMCE FT PFAEEAKDCLTILATLRVYSRLALKMTKLGQKEPQVMFDFNSGLNLLTLSATEAAAIQS FT LNSRLFRTEGAKNVFTAQASVGEQSVEI" FT CDS 7083..7457 FT /codon_start=1 FT /product="nucleic acid-binding protein" FT /note="ORF5; suppressor of RNA silencing; p13" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:A9XN91" FT /protein_id="ABU62823.1" FT /translation="MSKYMGESRSAAKRRATRYGRCYCCGRLECNGGRRTTISQDEVKA FT CIRTPAIRYLTENGGRYVTNAINLALGDMDRVGKSEYQSLFKRNSAPIGMRSPEETPEF FT YNWGADFNAGSSVFADRPYE" FT 3'UTR 7458..7599 XX SQ Sequence 7599 BP; 2258 A; 1471 C; 1987 G; 1882 T; 1 other; gaataaagtt cgctttttct ttaatcttcc gtaacgttac caaaagtaat gtcaatatcc 60 gtctcgtcac agcgcgttgc cagcgcagcc ctgtaccaga acgggtctac ggaccagatt 120 gaagaaatta aaaaaattaa aagctccagg ctactgagct cggagaaaca cagtgatggt 180 ttgtttgatt attatgttcc cgattttcta cgtgattact tcgctaggaa aggggttcat 240 acgagtgtgc actcttttca agcacatcca cacccatgtt caaaaatgat tgaaaatcac 300 attctttaca atataattag tcaatatgta gatgattcaa cactctttgt aagttgtaaa 360 gaatcaaagc ttaggacgtt attcatgaag aaaaccaata aatccctaag cacagtaact 420 caatacaaca gattagtgca tgcaaaggat gtattgagat atacagatcc tgttagggag 480 cttgacatgg agcatttaac caagctttca gagctggcca aaagagccaa gaccgccttc 540 atacacgatg aggtccacta ctggagtctg aaagatttcc aaagcttttt gggtcatttg 600 ggagggaccc aacgcttatt atatagcata atctacccag ccgaactcca tattggctgc 660 gaacagagtc tattccctga agcttatgag tttgatctgt tgggggaata catcacatgg 720 tacccggatg gcaaggcaga tgggtcttac aagcagccgg tcaacccatg gctgctcacc 780 acatctaaaa cagtggatgt gcatggccaa acatggacct tgactaaggt gctaaccatg 840 ggtgcacatc acctgttttt ggccaccaga ggtagttcaa tcaccgagga ggaatatcat 900 tacgatgatt acacagtgat tctaccaaag aagctgctac agggcagaag aaggaacaag 960 atgccatact taaggagccg gttcataaca agtgtgctac tttacttact ggctctaaag 1020 aaacctgacc ccagttccgc agtggcaaaa ttaaggcagc tgactaacgg ggaggaaagc 1080 accgccgagg cactatttgt cgcccaattg tcaagacaaa ttcaggagac gaagctttac 1140 gacaaaatgg gcaacttctc actgaaagag tgtatctgga gtgcagtgtc ggcagccatg 1200 gggaattcac ttgtctattt ctttgacaag gccaggttct acaatgaatc tctggagagt 1260 ttcattctga actgtggtcc agcgaaaata gagataaaga ggatcttccg tgaggccgtc 1320 tacaggaaca aaggggtatg cccacatctg gttagttttg atggagcccc tgactgcgtc 1380 attgatgagc tctacctcca gaacataagg gatcaggata gggccaggga accttactcc 1440 atcccgcaga gtgatgtaat aggtaagcgc aattgttgcc gaatctcact catagagatg 1500 ggtagagtgg tgcataggta ccatcaagag aggaaggtgg aaataaatag ggaagtggtt 1560 gtgagcccac tcgatgattt caaggctctc cgtgaacccc taacaggtcg taatggagta 1620 ataggcacaa catgcctttt actaacttgg gaggcagacc cactcaagag atactcaatg 1680 ggtttgatag atgcaaagga gctcaatcta gcactctttg gtaatgagcc ctctagtaac 1740 tctaagagcc aggagaagaa agtagtgcaa agcgctttca attgcacgtg tggaattgca 1800 ttaccaatga agagnttgaa aaatgcagtt aacgtgccca ctagtgattt cactgatgcg 1860 ctaaaaggga ggaaagctgc tttctacagc aggcactctt tgagctatag ttacaacggc 1920 ggtagtcata ccagcaaagg ttggccagag tggattaacg aggttgcaaa agatctcgga 1980 ctgggagagg attatgacca ctgtttagct caaatgtatg aggaaaataa aggtataaac 2040 caccatgctg atgatgagct ctgctacact gacccggagg ttgtaacggt gaatctgaaa 2100 ggaactgcca agttccatct caaatgtggg gaggagtgtt ctttaactct tcaagatggg 2160 gatgtacttg tgatgcctaa agggttccag acgactcaca agcacgcggt cacaagcttg 2220 agtgaaggga gggtcagcct aactttccga aatgggataa atgcaccgga tgaaggtagt 2280 gacaagatga gtgagtatga ggagaactca cctgagttgg aggaaagcct agatgctctg 2340 gaaaagaacc gaaagagtct atgcgcgctg cagattctag ctgatcacat gagagtggac 2400 ctggctatat gcactagcat ggtgttcgct aaggatccta gggcaataga ggaagtgaag 2460 agagggggta tgactctggg gaccttcatc tgtgtactaa aaagcttgaa cctagccgct 2520 tacatagaat ctgagagagg ttgtctagtt gtgaatggct catacaaaga gcttagctgc 2580 tatgcagaag acgatcacat atctgagtgg tcaggtccca ggaaagaaac ctccttctct 2640 aacgctctgt ctatgaaccc cgacatcagg gttgtgaaat acgaggtttg tgagcagagg 2700 gcaaagaagt tggtcaacag cttccaagag ggcttcacag gagtatgtct gaataagttc 2760 cagaagcaga agagctcatt caacttggtc aatggaaagg aattgataga tatccacctg 2820 actcttggtt tcgctggctc aggcaagagc ttctacccac agtgtgtact caagaacagc 2880 agctattcca acacactggt gatagtacca agaaaagcgc tatgcagtga ttggatcaat 2940 aaagttcatc ctgatgtgaa ggtggtgact tacgagtgcg cgttcagaca gcaaaagaaa 3000 gggtacgggc tcatcgtcat agatgaaatc ggtctgctgc caccaggtta tattgacatg 3060 gtgcacggtt acttctgtta tgacagcctc ttggtgctgg gcgatccatt acaatgtgag 3120 taccatagta agtctgacca tttcttccta ggtcaagagg agagcatctt caagaaattc 3180 aagggtcact gcaattattt gtacaagagc cataggctcc caaagaatca gaggctcttt 3240 gagatcgaat gcgatggtgc tgaagggggt ggtctgacct ttaataagcc cagaggcaaa 3300 gatttgacac tttgtgcatc acaaaggagg aaagaaagtg agagggatgt gagcacagtc 3360 ggtgaatcgc aagggttaag cgcaaaccga gtcaacattc tcttggacaa ggattggggc 3420 cgagttaatg aggagaccgt ggttgttgcc ttcaccaggg ccaggaaaga aataaatctg 3480 ataggctatt cgagcctcgt gtccaatctg aaaaggagcg cgaagagcat gatactcaga 3540 aaaattttaa gtggtgaacg agtatccgaa agcttaatac tgagtctcat cagaagaaag 3600 ttgcccgaat gtgacttggt gaagaaggag atgttgctag gggcatcaga cgagatggag 3660 gagaaattgg gtggtgaccc atatctgaaa gggctgctat gtctgataga tgaaatagag 3720 gaagaggagg ttgaaatgcc tgaacctgaa ttgctagagc cacaaagaac tcatctacca 3780 cttagtgtgg gcgagaatga gttatgtatt agcgatctca gggcgaaaga gcatagagaa 3840 gccagtactg aagctggtag gactgatcaa atcgatgaat ttggttacaa gggtgaacca 3900 gaaaacccga tgaatcataa agcactctac ctgtaccacc agaactccga cgtggcgaca 3960 ttcttcctat ctgtaaggaa gagattgcgt tttagggacg ctgagaagaa caggcgtaaa 4020 ttcaacaagt gtcgtgggtt cggggctcaa atgttcggcg tgatgaagca gatttacaaa 4080 ttgaaacagc cggatcatct accctcactc gagcgagcag agcaggattt catgaagaaa 4140 agaattgcaa agtcctcaaa attgattgag aagcatagtt ataggagtga accggattgg 4200 cctagtaact atctgaaaat cttcctaaag caacagaggt gtactaagat ggagaaaagg 4260 aaagtggatg ctaaagccgg gcaaaccata gcatgctttt gccatgcagt tttgtgtcgc 4320 ttcggaccac tacttcgtca gaccgagaag gccttgaggg atcagttggg acccaatgtg 4380 atgatttact ctcaaaagaa ttacaccgat ctggataaat ggtgtaagaa tttcgtccgg 4440 actctagatg ggactgactc tgactatgag gcgttcgata ggagtcagga tgaaaagatc 4500 ctggattttg aggtaaatgt tttgaggttc ttcctatggc ctgaggagat gatagaggag 4560 tatgtcacac tcaagctcat gatgggttgt agtatgggtg gtttagcagt gatgcggttc 4620 agtggtgaat ttgggacatt cttttttaac accatttgca acatgggctt tacatgcttg 4680 aagtatagca taagatcgga cacaccgatt tgttatgccg gtgatgatat gtacgcccca 4740 ggcgttttgg tgactaaatc agaatacaag catgttttgg aagaactgca attgaaggcc 4800 aaagtgaatt acacgagaag tccgctcttc tgtggctggc gcatgagccc ttatggcata 4860 gtgaaagatc cgaacctgct ccttgatcga tggaaaatag ctgaaagaga tggtagtctt 4920 aagaattgca tggtcaatta tgctttggag gctatctatg ggtacaggtt aggtgagcac 4980 ctctttgatc tcaatataga tatagatgct caacaggact tggttcgaag gatagtgctc 5040 atcaagcacc tgcttcccca gagcctccag agattctatt cagatgagga gagggagtgc 5100 tactctgatg gagaagagtt caaccttaaa gtgaggaacg agggtggtct ggatgagtca 5160 gacctcacag aggattgaat ctggaaattt aagcctattt ctgaggcaag tagaagggct 5220 caaactggac atcaatgtgt taactgcaga atatagcaag ttaggtatat tagaggctca 5280 gcattatagg attttaagtc tcctttgtag gattaataaa gtgagtgtgt ctttcatagt 5340 gagttgcttg attagaaagg agtgtgcaat aagcgattac cgggaaggtg ccatctgctt 5400 aggtttggaa gaggtaacag aaggactcgt cagtggttca ttaccgtctg tcttcgcaat 5460 tcgtaaggat tttgagagag gttctgtggc tttcaattac ccttggtact attctataac 5520 ccgagaacca ggttcacgag cgcaatactc tttccgcaac tatgtcccag gtctcaagga 5580 gcgaatctca gcgttaccct ggatggctat cggtttcaaa ccgagcgcag ccaacaaccc 5640 aacgaaccca ggaacccact catacacaat tgagtgtgtt cgacaagcct aaagaggagt 5700 tgggggtgaa aggggtgaag agtgcaataa ctaaagcgaa agtctacgac ttgagctact 5760 tcgaaaggct cttcccaact agggtattca aaagcgtggt gcacgaagag atcaggataa 5820 gggatggtga agtgaagcag gtgatcaatc taatggatga tgattttgtg agaaagattg 5880 agactacctc ttacccttac ctccatctgg gttgcctggc tatatgcgtg ataccccacg 5940 ggagagatct gaaaggtgat gttgaattca ttctcaggga tacgaggttc ttgccgaata 6000 gtgaaccatt gatgtcattc ggttgcaaag cagagaaaat gttgagtgcg ttcagtgcct 6060 ttccggggta tttcgtgagc acgtatgatc tgatcgacgg ttttactatg gagctcgagg 6120 tcaaagccag agggatggaa tttgaggaag gggtgcggcc catgtccata cagataatct 6180 gcgtagctaa gctgtgctcg caagatttcc atcaccaata tacattgcag aaggtgaaga 6240 aaggggccta ccaggctttg ctgaattcgt acttggtaca gactgaggat cagacggagt 6300 acctagagat tcagaatcca ggtaaatctc ttgacaggaa cggttatacc ggtatccaag 6360 ttaagtctgg aggatctgag tcaatagata agctgctggt accaccggaa gtgtacgaaa 6420 caataagcaa gcagttcccg gaaagcaatg gaaaatatat cccggatggc caagataaga 6480 gcgaatatcc ccgagcttct atgcgcgggg gtcacattcg taactgacgc tcgtgaaacc 6540 gggttcgatc gtcccatgta tttcagaacc ttgtttgggt acatcgcact gactgggaca 6600 tcagccaaag cacagcacta tgaaaatgta gatatcatag gagataaggt aggagcagaa 6660 gggttagata gtaggggtac cgtcaatatt tctgagcagg tgaaaaagat gatgggttat 6720 tctcgagctg taccatctgg ggtatgcaag ggtctcactt tgagacaaat gtgcgagcct 6780 tttgctgagg aagccaagga ttgtttaact atactggcaa cactgagggt gtatagcagg 6840 cttgcactaa agatgacaaa gttgggtcag aaagaacccc aggtaatgtt cgactttaac 6900 tctggtctta acttactcac gttgtcggct accgaagcag ctgcaataca gtctctgaac 6960 tcaaggctct ttcgaactga gggtgcaaag aacgtattca cagcacaagc cagcgtgggt 7020 gagcagtctg tcgaaatata ggtggttaac ccataggtac agaggtgttg gagtaagtaa 7080 gtatgtctaa gtatatgggt gagtctagga gtgcggctaa acgaagggct actcgttacg 7140 gccgttgtta ctgttgtggt agattagagt gtaatggtgg gcgcaggact actatttcac 7200 aagatgaggt gaaagcatgc ataaggactc cggcgattag gtatctcacc gaaaacggag 7260 gtcggtatgt aactaatgca attaaccttg ctcttggtga tatggatagg gttgggaagt 7320 ctgagtacca atcgttattt aagcgcaata gtgcaccaat aggtatgcgt agcccagaag 7380 aaacccctga gttctacaat tggggggccg atttcaacgc tggctcaagc gtgtttgctg 7440 atagaccata cgaatagtct atccctgatt tcaatactag gttaagtatg ttcgctaacg 7500 gaccgtacga atagtccgtc aataattcta gggtagaatt caaataatcc caccactaac 7560 gacttaatgt taatggtgaa agaagcgtga ataaacacg 7599 //