ID EF554577; SV 1; linear; genomic RNA; STD; VRL; 6223 BP. XX AC EF554577; XX DT 23-MAY-2007 (Rel. 91, Created) DT 27-FEB-2008 (Rel. 94, Last updated, Version 2) XX DE Okra mosaic virus isolate PV-0264, complete genome. XX KW . XX OS Okra mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6223 RX DOI; 10.1007/s11262-007-0181-1. RX PUBMED; 18049886. RA Stephan D., Siddiqua M., Ta Hoang A., Engelmann J., Winter S., Maiss E.; RT "Complete nucleotide sequence and experimental host range of Okra mosaic RT virus"; RL Virus Genes 36(1):231-240(2008). XX RN [2] RP 1-6223 RA Stephan D., Ta Hoang A., Siddiqua M., Engelmann J., Winter S., Maiss E.; RT ; RL Submitted (13-APR-2007) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Leibniz University of RL Hannover, Herrenhaeuser Str. 2, Hannover, Lower Saxony 30419, Germany XX DR MD5; 34b153d76e315e05d8271ae6eedd0244. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6223 FT /organism="Okra mosaic virus" FT /isolate="PV-0264; available from DSMZ (German collection FT of microorg. and cell cultures), Braunschweig, Germany" FT /mol_type="genomic RNA" FT /country="Nigeria" FT /db_xref="taxon:70822" FT gene 85..2100 FT /gene="MP" FT CDS 85..2100 FT /codon_start=1 FT /gene="MP" FT /product="putative movement protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:A5JPL2" FT /protein_id="ABQ45358.1" FT /translation="MSNGFPTSPGRPIQHKSQGSLPSSSVRVGHRLHKTLSHELSLGRP FT QGEPLLPPLLRHPSLKPGLLPTPPPHPQDPRNPPSLQPLDTPRRPARLSSLHETPEVSQ FT ASKVEPQLPTPPQLPHHPEGLHSFSFFLHDSPKHPRRFHARRPHVLSSLPDSAPLSPVP FT PTGSPLRLSGRPTRKLLHRSLSLPRHLQLSNSLPDPSLRPGRPLRRRVQSAPSVPQLAE FT DFLHLSPRSPPHHFHPGLLGPSPQPPNHPLHPPQKPLSPPPSHPSQPLQLRHVRSKGRG FT LLPHPQDAPASKPYLPQPAPSRPTRPRVGLQRPLHLYPGRSDSPSVRPRRIRPDPLQQT FT RAFLGHPKRLGQPSHLRSPQLPPPSKHGVPLFPNPPLQSQALPPTALAPNNRRRRSYPL FT LPNPPAALPSVVFASRKGKVHFRLPAANLPFSPPSSPPSSSPLSLPASPSPLLPRPPPP FT TFPGRQSPPRARFSPTPLSFIPRPLFFLSSEEESTSPCSSSSDFHSLPPSPQHPRPPSP FT PRLLGAGIVHSCLQDSTTSQPPTPRRTLPLPFTPPPLSPSVGTQSSGPSSPDSVPAVRT FT SSKPTPTAAIHASRSPSPSPILPSSPSCSSPELSPFSTPLKPGHRRLLPSDLPFQHQYS FT KLPAHLRSKQLTCSEIRIFQRVLPFYIDSLPSPPRP" FT gene 92..5542 FT /gene="RdRp" FT CDS 92..5542 FT /codon_start=1 FT /gene="RdRp" FT /product="putative RNA-dependend RNA polymerase" FT /db_xref="GOA:A5JPL3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A5JPL3" FT /protein_id="ABQ45359.1" FT /translation="MAFQLALDALSNTSHRDPSLHPVLESVTDSIRHSLTNYPWAVPKA FT NLSFLLSSGIPVSNLGSSQHPHPTHKILETHLLFNHWTHLAVQPASVLFMKPQKFHKLQ FT RLNPNFQHLHNYHITPKDFTRFPSSSTTLPNTPVVFMHDALMYYHPSQIVHLFLQSPQL FT VHLYASLVVPPESSFTDLSLYPDIYNYQIHSQTLHYVPEGHSAGAYNQPLQSLSWLKTS FT SISHPEVHLTISILDSWGPLHSLLITRFTPPKNPSHPPPPTHPNHFNSVTSDQKDVASF FT RIPRMLQLPNPTYLNQPLRDRLVPESVYNALFTYTRAVRTLRVSDPAGFVRTHSNKPEH FT SWVTPSAWDNLHTFALLNCHHRPNTVFHFFQTPLSNLKLYLQQHWRRITAVAAPTLSFL FT ILLPRFLQWSLPLAKVKSISAFRRQIYLSPPPAVPPPPPPSPFPLPPLLSFLGPLLQPF FT LADNHPLVPAFRQLLFRSFPALFSSSPAKKSPPLPVLPRVTFTPCRLPLNTPVPLALLA FT SLVPELFILASKILQPPSPQLRDELYHSHLHPPLFHLQWGRSPLVLQVPTPFLPFEPLP FT NPPPPPQSMLPAPPPPPPSFPALPPAPPQNSPPSPLPSNQAIADSSPATSPSNTSTPNS FT PPTFGPNNSPAPKSESSNGSFPSTSTPSPPHPDPETPDQSDLPRSNLYHPSGELNYQAS FT PPVTSPDSPLVPVVPLPQELLPPLIADVTCCGPVLAFSTLFPEEYHASSASFQTRLRLL FT PPTPLPMPSNNCLLTALSPSLNLSEERLWSALQEILPDSLLSNAEIDQPGMSTDLLVAL FT CYTFKFQCTISSDLGLLHYGLKRSSQTVFIKHTNGPPAHYSELPRLSGASRPTTSPLAE FT AALRFQFRGHHLPFSTVHSYTTDLARAKNLISNMKNGFDGILSTIDPNVKHSPGQSPRD FT KILALDRLIDPAVPKTVELIHIAGFAGCGKTLPVQHLLRTRPFSSFRVCCPTTELRNEW FT KRDLSLPSHLSWKFCTWESSLLKQSPVLVIDEVYKLPRGYVDLAIQADPLLQFVILLGD FT PLQGEYHSTSPHSSNHTLSPESSHLLRFIDFYCFWSHRVPSPICDLFGLPSFNKSSLTY FT RHHVRFTEHYNLGQQNLVNSIATANAVSQLGFPTCTISASQGLTFRKHVTVLLDKHSRR FT LSPSNAIVALTRSTAGVDFLGASDALSGTNNSCDIFSRAIYQQPINLHTAFPNIFPHLN FT LITSPLQRRSNRLTGSHNPITTPLLSRHSHLPPHIPCDYRRDFLVQNPILPGFGPEERL FT DVHFLPPTRLPLQSDLLSTLPSSSDPTPPPSDFSTPITPVYPGETFENLAAHFLPAHDP FT DLKEILWQDQSSNQFPWFDRPFSLSCQPSSLLAAKHSPAKDPTLLPASIKKRLRFRPSE FT SPHQITSNDVILGHILYQSLCRAYNRPPHLTIPFNESLFADCININDYAQLSSKTKATL FT VANAGRSDPDWRHTAVRIFAKAQHKVNDGSIFGNWKACQTLALMHDFVILTLGPVKKYQ FT RFFDSQDRPPHIYSHLGKTPSQLSSWSHSFLPPGPKLANDYTSFDQSQHGESVVLEVLK FT MKRLSIPSHLIQLHLHLKTHVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVLFSQYDLSS FT THVMVSGDDSLIAGLPTERPEWPSIHRLLHLRFKTETTSQPLFCGYYVGPAGAIRNPLA FT LFAKLMIAFDDDALPERRLSYLTEFSIGHLLGDALWSLLPDHLHPFQSACFDFFSRFCP FT PHEKMLLSSDPLPIHLLERVTSSARWLSKTATSALPTRLTRKILDFSQSQSSTKTPKSP FT T" FT gene 5569..6135 FT /gene="CP" FT CDS 5569..6135 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A5JPL4" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5JPL4" FT /protein_id="ABQ45360.1" FT /translation="MTSDRIVAPQLALNTKSSTLPLEPGVTPPTISYPFQIQVAALGTK FT PYSDAISIASNATVASYTSLYRHAILHSLKATIHPTARAPAYPCDVSIAWVPANSSATP FT AQVLSVYGGQMFCIGGAINSTQPIDFPCNLTQVNPTIKDSVTFTDTPKLIVNSTVGASP FT PTVPTCHLTITGIVTLHSPLLQASA" XX SQ Sequence 6223 BP; 1168 A; 2788 C; 925 G; 1342 T; 0 other; gtaatcttca cccagtagtt ctcttcggac gcctactgcc ttcaaacttt cccttctaac 60 acactgcctg cgaagccagt tgttatgtcc aatggctttc caactagccc tggacgccct 120 atccaacaca agtcacaggg atccctccct tcatccagtg ttagagtcgg tcaccgactc 180 cataagacac tctctcacga actatccttg ggccgtcccc aaggcgaacc tctccttcct 240 cctctcctcc ggcatcccag tctcaaacct gggctcctcc caacaccccc accccaccca 300 caagatcctc gaaacccacc ttctcttcaa ccactggaca cacctcgccg tccagcccgc 360 ctcagttctc ttcatgaaac cccagaagtt tcacaagctt caaaggttga accccaactt 420 ccaacacctc cacaattacc acatcacccc gaaggacttc actcgttttc cttcttcctc 480 cacgactctc ccaaacaccc ccgtcgtttt catgcacgac gccctcatgt actatcatcc 540 ctcccagata gtgcacctct ttctccagtc cccccaactg gttcacctct acgcctctct 600 ggtcgtccca ccagaaagct ccttcaccga tctctctctc taccccgaca tttacaacta 660 tcaaattcac tcccagaccc ttcactacgt cccggaaggc cactccgccg gcgcgtacaa 720 tcagcccctt cagtccctca gctggctgaa gacttcctcc atctctcacc ccgaagtcca 780 cctcaccatt tccatcctgg actcctgggg ccctctccac agcctcctaa tcacccgctt 840 cacccccccc aaaaacccct ctcacccccc ccctcccacc catcccaacc acttcaactc 900 cgtcacgtcc gatcaaaagg acgtggcctc cttccgcatc cccaggatgc tccagcttcc 960 aaaccctact tacctcaacc agccccttcg cgaccgactc gtccccgagt cggtttacaa 1020 cgccctcttc acctataccc gggccgttcg gactctccga gtgtccgacc ccgccggatt 1080 cgtccggacc cactccaaca aacccgagca ttcttgggtc accccaagcg cttgggacaa 1140 ccttcacacc ttcgctctcc tcaactgcca ccaccgtcca aacacggtgt tccacttttt 1200 ccaaaccccc ctctccaatc tcaagcttta cctccaacag cactggcgcc gaataaccgc 1260 cgtcgccgct cctaccctct ccttcctaat cctcctgccg cgcttccttc agtggtcttt 1320 gcctctcgca aaggtaaagt ccatttccgc cttccggcgg caaatttacc tttctccccc 1380 cccagcagtc ccccctcctc ctcccccctc tcccttcccg cttccccctc tcctctcctt 1440 cctcggcccc ctcctccaac ctttcctggc cgacaatcac cccctcgtgc ccgcttttcg 1500 ccaactcctc tttcgttcat tccccgccct cttttcttcc tctccagcga agaagagtcc 1560 acctctccct gttcttcctc gagtgacttt cactccctgc cgccttcccc tcaacacccc 1620 cgtcccccta gccctcctcg cctccttggt gccggaattg ttcattcttg cctccaagat 1680 tctacaacct cccagccccc aactccgaga cgaactctac cactcccatt tacacccccc 1740 cctctttcac cttcagtggg gacgcagtcc tctggtcctt caagtcccga ctccgttcct 1800 gccgttcgaa cctcttccaa acccaccccc accgccgcaa tccatgcttc ccgctccccc 1860 tccccctccc ccatccttcc cagctctccc tcctgctcct ccccagaact ctcccccttc 1920 tccactcccc tcaaaccagg ccatcgccga ctcctcccca gcgacctccc cttccaacac 1980 cagtactcca aactccccgc ccaccttcgg tccaaacaac tcacctgctc cgaaatccga 2040 atcttccaac gggtccttcc cttctacatc gactccctcc cctccccacc cagaccctga 2100 gacccccgat caatctgacc taccccgctc caacctttac catccttccg gggagctcaa 2160 ctatcaggct tccccccctg tcacttctcc cgactcacct ctcgttcctg tggtgcctct 2220 cccacaggag ctcctccccc ccctcatcgc agacgtcacc tgctgcggtc ccgttctggc 2280 cttctccacc ctcttccccg aagagtacca cgccagctcc gcttccttcc agacccgact 2340 ccgtctcctc cccccaaccc ccctcccaat gccctccaac aactgccttc tcaccgccct 2400 ctccccttcc ctcaatctta gtgaagaacg cctttggagc gctcttcaag aaattctccc 2460 cgactccctc ctcagcaatg ccgaaatcga tcaaccgggc atgtccactg acctcctcgt 2520 ggccctgtgc tacaccttca agttccagtg cacgatctcc tccgacctcg gcctcctcca 2580 ttacggtctc aagcgctctt cccagaccgt cttcatcaaa cacaccaacg gccctcccgc 2640 ccattactcc gagctccccc gcctctccgg cgcctctcga cccaccacct cccccctcgc 2700 cgaagccgcc cttcgcttcc agttccgagg ccaccacctt cccttcagca ccgtccattc 2760 ctacaccacc gacctagccc gagccaaaaa cctcatttcc aatatgaaaa atggctttga 2820 cggcattctc tctaccatcg accccaacgt caaacactcc cccggtcaat cccccaggga 2880 caaaatcctg gctcttgacc gcctcatcga ccccgcagtt ccaaaaactg tggagctcat 2940 ccacatcgcc ggcttcgccg gttgtggcaa aaccctcccc gttcaacacc tcctccgaac 3000 tcgccccttt tcctccttcc gcgtctgctg cccaaccact gagttgcgca acgaatggaa 3060 gcgagatctc tccctcccct cccacctcag ctggaagttc tgcacctggg aatcctccct 3120 tctcaagcag tctcccgtcc tcgtcatcga cgaggtctac aagctccccc gaggttacgt 3180 tgacctcgcc atccaagctg accccctcct ccaatttgtc atcctccttg gtgaccccct 3240 ccaaggcgag taccactcca cctcccccca ttcctccaac cacacccttt ctccggagtc 3300 ctcccacctg ctccgtttca tcgacttcta ctgcttctgg tcccacagag tcccctctcc 3360 catctgcgat ctcttcgggc tcccctcgtt caacaagtct tccctcacct accgacacca 3420 cgttcgcttc accgagcact acaacctcgg ccagcagaac ctggtgaaca gcatcgccac 3480 tgccaacgct gtgtcacaat tgggctttcc aacttgcacc atcagtgcca gccaaggcct 3540 caccttccgc aagcacgtca ccgtgctcct cgacaaacac tcccgtcgcc tctctcccag 3600 caacgccatc gtagccctca cccgctccac cgccggcgtt gacttcctcg gcgcttcaga 3660 cgccctctcc gggaccaaca attcctgcga catcttctcc cgcgccatct accagcagcc 3720 tatcaacctc cacaccgcct tcccaaatat cttcccccac cttaacctca tcaccagccc 3780 tctccagcga cgctccaacc ggctcactgg ttcccacaac cccatcacca ctccccttct 3840 ctcccgccac tcccacctcc cccctcacat cccctgcgac taccgccgcg atttcctcgt 3900 ccagaatccc atcctccccg gcttcggccc agaagaacgt ctggacgtcc atttccttcc 3960 acccacccgc ctccctctcc agagcgacct cctgtccact ctcccttcct cctccgatcc 4020 caccccccca ccctccgact tctccacccc catcaccccc gtctaccccg gcgaaacctt 4080 cgagaatctc gccgcccact tcctccccgc tcacgacccc gatctcaaag agatcctctg 4140 gcaggaccaa tcatccaacc agttcccttg gttcgaccgc ccattctccc tctcctgcca 4200 gccctcctct ctcctcgctg ccaaacactc ccctgccaaa gaccccaccc tcctccccgc 4260 ctccatcaag aaacgcctcc gcttccgccc atctgaatcc ccccaccaaa tcacttccaa 4320 cgacgtcatc ctcggccaca ttctttacca gtctctttgc agagcctaca atcgcccccc 4380 ccacctcaca atacccttca acgagagcct attcgctgac tgcatcaaca tcaacgacta 4440 cgcgcagctc tccagcaaga ccaaggccac cctcgtcgcc aacgccggcc gctccgaccc 4500 tgactggcgc cacaccgccg ttcgcatctt cgccaaggcc caacacaagg tcaacgacgg 4560 ctccatcttt ggcaactgga aagcttgcca aaccctcgcc ctcatgcacg acttcgtcat 4620 ccttactctt ggaccagtca agaaatacca acgtttcttc gactcccaag accgcccccc 4680 ccacatctac tcccacctcg gcaagacccc atcccagctc tcctcctgga gccactcctt 4740 tcttccccct ggccccaagc ttgccaacga ctacacttct tttgaccagt cccagcatgg 4800 cgagtccgtt gtgctggaag tgctcaagat gaagcgtctc tccatcccct cccacctcat 4860 ccagctccac ctccacctca aaactcacgt gtccacccaa ttcggccccc tcacctgcat 4920 gcgactcact ggcgagccag gcacatacga cgacaacact gactacaatc tcgccgtgct 4980 tttctcccag tacgacctct cctccaccca cgtgatggtc tccggcgacg attcgctcat 5040 cgccggtctc cccaccgagc gacctgaatg gccatccatt caccgcctcc tccacctccg 5100 cttcaaaacc gagaccacct cccaacccct cttctgtggc tactacgtcg gccccgccgg 5160 cgccatacgc aaccccctcg cccttttcgc caagctcatg attgccttcg acgacgacgc 5220 ccttcccgaa cgccgtctta gctacctcac cgagttctcc atcggccatt tgctcggcga 5280 cgcactgtgg tccctcctcc ccgaccatct ccaccctttc caatcagcct gcttcgactt 5340 cttctcccgc ttctgccccc cccatgagaa aatgctcctc tcttctgacc ccctgcccat 5400 ccacctccta gaacgcgtca cctcatccgc ccgatggcta tccaaaaccg ccacctcagc 5460 cctccccacc cgcctcaccc gcaaaattct tgacttctcc cagtcccaat cctccaccaa 5520 gaccccaaaa tctccaactt gaggctgaat tgcttcactc cttcaatcat gacttccgac 5580 cgcattgtcg ctcctcagct cgcgctcaac accaagtcct ccactctccc cctcgaaccc 5640 ggcgtcactc cgccaaccat ctcctatccc ttccagatcc aagtcgccgc acttggaacc 5700 aaaccctact ccgatgccat ctccatcgca tccaatgcca ccgtggcgag ctacacctcc 5760 ctctaccgtc acgccatcct ccactccctc aaggccacca tccaccctac tgcccgcgcc 5820 cccgcttacc cttgcgacgt ttccatcgct tgggtgcctg ccaattcttc cgccactccc 5880 gcccaggtcc tctccgtcta cggcggccag atgttctgca tcggcggcgc catcaactcc 5940 acccaaccca tcgacttccc ctgcaacctc acccaggtta accccaccat caaagactcc 6000 gtcaccttca ctgacacccc aaagctgata gtgaattcca ccgtcggcgc ttctcccccc 6060 accgtcccca cctgccacct cacgatcact ggaatcgtga ctctccactc tcccctcctc 6120 caagcatcag cctagctgat gtagtcggcc agtgccgagg cccttcacac acaagggtta 6180 atggggtgca actcccccgc ctatctcgag cgtcatcgag acc 6223 //