Dbfetch
ID EF547124; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC EF547124; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UMbal-308, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1099/vir.0.83144-0. RX PUBMED; 17947543. RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(Pt 11):3154-3165(2007). XX RN [2] RP 1-2689 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the INSDC. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX DR MD5; e8aa708505ffbb2d05f310494d8113d7. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /isolate="UMbal-308" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2688..2689,1..304) FT /gene="MP" FT CDS join(2688..2689,1..304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ABQ40351.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 315..1049 FT /gene="CP" FT CDS 315..1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A5JM04" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JM04" FT /protein_id="ABQ40349.1" FT /translation="MSTSKRKRGDDSNWSKRVIKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050..1201) FT /note="short intergenic region; SIR" FT misc_feature complement(1202..1663) FT /note="RepB; contains internal stop" FT gene complement(1558..2376) FT /gene="RepA" FT CDS complement(1558..2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JM05" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JM05" FT /protein_id="ABQ40350.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQDEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" FT misc_feature 2377..2685 FT /note="long intergenic region; LIR" XX SQ Sequence 2689 BP; 684 A; 636 C; 690 G; 679 T; 0 other; ggatccacag aacgccctct attatcagcc gcgggtaccc acagcagctc cggcatccgc 60 aggagtgccg tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg 120 cttttacctg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcgaca 180 aggcagatcc acggaggagc tgatatttgg aggacaagct gtggatagga gcaaccctat 240 ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg 300 ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg aattggagta 360 agcgggttat taagaagaag ccctcttcag ctggtctgaa gagggctggc agcaaggccg 420 ataggccatc cctccaaatc cagacactcc agcatgctgg gaccaccatg ataacggtcc 480 catccggagg agtatgtgac ctcatcaaca cctatgcccg aggatctgac gagggcaacc 540 gccacaccag cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg 600 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca 660 ctcccggcgg acaagctccg accccgcaaa ctatatttgc ctaccctgac acgctaaaag 720 cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc 780 gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccctcgaatg 840 caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 900 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt 960 tgtacatggt cattgccccc ggcaatggtc ttacatttac tgcccatggg cagacccgtc 1020 tgtactttaa gagtgttggc aaccagtaat gaataaaaac tcccgtttta ttatatctga 1080 tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca 1140 atacaggggg gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaga acatcgaaaa 1200 atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga gaataccact 1260 tctcccccgg cgacataatg taaatgacgc agtttgcctc gaaatactcc agctgccctg 1320 gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact 1380 tcttctgcac cttcttcttc ttaccatact tggggtttac aatgaaatcc ctctgacagc 1440 caactaactg tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga 1500 ttgcgtcttc gttgtatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta 1560 ggcttctggc ccaagtagat tttcctgttc ttgttgggcc gacgatgtag aggctctgct 1620 ttcttgatct ttcatctgat gactggatac attatccatc cattggaggt cagaaattgc 1680 atcctcgagg gtataacagg taggttgaag gagcatgtaa gcttcgggac taacctggaa 1740 gatgttaggc tggagccaat cattgattga ctcattgcaa agtaaatcag gtgaggattg 1800 cggatgagga ttggtgaact catcctgaat ctcaggaaaa agcttatttg cagagtattc 1860 aaaatactgt aattttgtgg accaatcata gggaagctct ttctggatca tggagaggta 1920 ctcttccttg gaagtagagt gtgaaataat gtctcgcatt atttcatctt tggaaggctt 1980 tttttctttt acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt 2040 acctctctca aacatagcca gaggttcctt gaggatgtaa tcccttaccc tgtttactga 2100 cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg agtccgatat 2160 tcttaccggc ttctctgttt gaagcaatgc atgtaaatgc aaacttccat ctttatgtgc 2220 ctctcgggca catagaatgt acttgggaat ccaacgaaca acgagctccc agatcatctg 2280 acaggcgatt tcaggatttt ctggacactt tggataggtg aggaacgtgt tagcgttcct 2340 gtgtgagaac tgacggttgg atgaggagga ggccataacc gacgacggag gttgaggctg 2400 agggatggca gactgggagc tcaaaactct atagtatacc tgtgcgcctt cgaaatccgc 2460 cgctcccttg tcttatagtg gttgtaaatg ggccggaccg ggccggccca gcaggaaaag 2520 aaggcgcgca ctaatattac cgcgccttct tttcctgcga gggcccggta gggcccgagc 2580 gatttgatgt aaagcctggt cctgctttgt atgatttatc taaagcagcc cattctaaag 2640 aaaccggtcc cgggcactat aaattgccta acaagtgcga ttcattcat 2689 //