Dbfetch
ID EF547121; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC EF547121; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UKap-289, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1099/vir.0.83144-0. RX PUBMED; 17947543. RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(Pt 11):3154-3165(2007). XX RN [2] RP 1-2689 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the INSDC. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX DR MD5; a9867009e554991bf9fd6a5b1aad2c43. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /isolate="UKap-289" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2688..2689,1..304) FT /gene="MP" FT CDS join(2688..2689,1..304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A5JLZ1" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLZ1" FT /protein_id="ABQ40339.1" FT /translation="MDPQNALYYQPRVPTAAPTSAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 315..1049 FT /gene="CP" FT CDS 315..1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A5JLJ4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JLJ4" FT /protein_id="ABQ40337.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAASKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050..1201) FT /note="short intergenic region; SIR" FT gene complement(1202..1663) FT /gene="RepB" FT CDS complement(1202..1663) FT /codon_start=1 FT /gene="RepB" FT /product="RepB" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A5JLC7" FT /protein_id="ABQ40340.1" FT /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN FT SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS" FT gene complement(1558..2376) FT /gene="RepA" FT CDS complement(1558..2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JLZ4" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLZ4" FT /protein_id="ABQ40338.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQFSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" FT misc_feature 2377..2687 FT /note="long intergenic region; LIR" XX SQ Sequence 2689 BP; 685 A; 642 C; 692 G; 670 T; 0 other; ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc cgacatccgc 60 aggagtgccg tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg 120 cttttacctg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcgaca 180 aggcagatcc acggaggagc tgatatttgg aggacaagct gtggatagga gcaaccctat 240 ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg 300 ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg aattggagta 360 agcgggtgcc taagaagaag ccctcgtcag ctgggctgaa gagggctgca agcaaggccg 420 ataggccatc cctccaaatc cagacactcc agcatgctgg gaccaccatg ataacggtcc 480 cctccggagg cgtatgtgac ctcatcaaca cctatgcccg aggatctgac gagggcaacc 540 gccacaccag cgagactctg acgtacaaga tcgccatcga ctaccacttc gttgccgacg 600 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca 660 ctcccggcgg acaagctccg accccccaaa ctatatttgc ctaccctgac acgcttaaag 720 cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc 780 gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccctcgaatg 840 caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 900 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt 960 tgtacatggt cattgccccc ggcaatggtc ttacatttac tgcccatggg cagacccgtc 1020 tgtactttaa gagtgttggc aaccagtaat gaataaaaac gccgttttta ttatatctga 1080 tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacacaatca 1140 atacaggggg gtagtcggcg ggcggctaag ggtggtgctc ggcgggcaga acatcgaaaa 1200 atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga gaataccact 1260 tctcccccgg cgacataatg taaatgacgc agtttgcctc gaaatactcc agctgccctg 1320 gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagatt 1380 tcttctgcac ctttttcttc ttaccatact tggggtttac aatgaaatcc ctctgacagc 1440 caactaactg tttccaacaa ggacagaatt taaacggaat atcatctacg atgttgtaga 1500 ttgcgtcttc gttgtatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta 1560 ggcttctggc ccaagtagat tttccggttc ttgttgggcc gacgatgtag aggctctgct 1620 ttcttgatct ttcatctgat gactggatac agaatccatc cattggaggt cagaaattgc 1680 atcctcgagg gtataacagg taggttgaag gagcatgtat gcttcgggac taaactggaa 1740 gatgttaggc tggagccaat cattgattga ctcattacaa agcaaatcag gtgatgaggg 1800 tggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg cagagtattc 1860 aaaatactgc aattttgtgg accaatcaaa gggaagctct ttctggatca tggagaggta 1920 ctcttctttg gaagtagcgt gtgaaataat gtctcgcatt atttcatctt tagaaggctt 1980 tttttccttt acctctgaat cagattttcc taggaaggga gacttcctag gaatgaaagt 2040 acctctctca aacacagcca gaggttcctt gaggatgtaa tccctcaccc tgttgactga 2100 cttggcactc tgaatgtttg ggtgaaaccc atttatatca aaaaaccttg agtctgatat 2160 ccttaccggc ttctctgtct ggagcaatgc atgtaaatgc aaacttccat ctttatgtgc 2220 ctctcgggca catagaatgt atttgggaat ccaacgaaca acgagctccc agatcatctg 2280 acaggcgatt tcaggatttt ctggacactt tggataggtt aggaacgtgt tagcgttccg 2340 gtgtgagaac tgacggttgg atgaggagga ggccatagcc gacgacggag gatgaggctg 2400 agtgatggca gactgggagc tccaaactct atagtatacc tgtgcgcctt cgaaatccgc 2460 cgctcccttg tcttatagtg gttgtaaatg ggccggaccg ggccggccca gcaggaaaag 2520 aaggcgcgca ctaatattac cgcgccttct tttcctgcga gggcccggta gggcccgagc 2580 gatttgatgt aaagcctggt cctgctttgt atgatttatc taaagcagcc caatctaaag 2640 aaaccggtcc cgggcactat aaattgccta acaagtgcga ttcattcat 2689 //