Dbfetch
ID EF547105; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC EF547105; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UHoi-170, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.83144-0. RX PUBMED; 17947543. RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(Pt 11):3154-3165(2007). XX RN [2] RP 1-2687 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the INSDC. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX DR MD5; 16589787481f3f4aa89bd84298461132. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /isolate="UHoi-170" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2686..2687,1..304) FT /gene="MP" FT CDS join(2686..2687,1..304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ABQ40277.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 315..1049 FT /gene="CP" FT CDS 315..1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q6LBI6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q6LBI6" FT /protein_id="ABQ40275.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050..1201) FT /note="short intergenic region; SIR" FT gene complement(1202..1663) FT /gene="RepB" FT CDS complement(1202..1663) FT /codon_start=1 FT /gene="RepB" FT /product="RepB" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A5JLC7" FT /protein_id="ABQ40278.1" FT /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN FT SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS" FT gene complement(1558..2376) FT /gene="RepA" FT CDS complement(1558..2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JLH6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLH6" FT /protein_id="ABQ40276.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSVQQEQENLLGPEA" FT misc_feature 2377..2685 FT /note="long intergenic region; LIR" XX SQ Sequence 2687 BP; 690 A; 641 C; 687 G; 669 T; 0 other; ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc cggcatccgc 60 aggagtgccg tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg 120 cttttacctg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcgaca 180 aggcagatcc acggaggagc tgatatttgg aggacaagct gtggatagga gcaaccctat 240 ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg 300 ataagcattg agccatgtcc acgtccaaga ggaagcgggg agatgattcg aattggagta 360 agcgggtgac taagaagaag ccctcttcag ctgggctgaa gcgggctgga agcaaggccg 420 ataggccatc cctgcaaatc cagacactcc agcatgctgg gaccaccatg ataactgtcc 480 catccggagg agtatgtgac ctcatcaaca cctacgcccg aggatcggac gagggcaacc 540 gccacaccag cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg 600 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca 660 ctcccggcgg acaagctccg accccgcaaa ctatatttgc ctaccctgac acgctaaaag 720 cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc 780 gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccctcgaatg 840 caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 900 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt 960 tgtacatggt cattgcccct ggcaatggtc ttacatttac tgcccatggg cagacccgtc 1020 tgtactttaa gagtgttggc aaccagtaat gaataaaaac tcccgtttta ttatatctga 1080 tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca 1140 atacaggggg gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaaa acatcgaaaa 1200 atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga gaataccact 1260 tctcccccgg cgacataatg taaatgacgc agtttgcctc gaaatactcc agctgccctg 1320 gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact 1380 tcttctgcac cttcttcttc ttaccatact ttgggtttac aatgaaatcc ctctgacagc 1440 caactaactg tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaaa 1500 ttgcgtcttc attatatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta 1560 ggcttctggc ccaagtagat tttcctgttc ttgttggacc gacgatgtag aggctctgct 1620 ttcttgatct ttcatctgat gactggatac agaatccatc cattggaggt cagaaattgc 1680 atcctcgagg gtataacagg taggttgaag gagcatgtaa gcttcgggac tgacctggaa 1740 gatgttaggc tggagccaat cattgattga ctcattacaa agtaaatcag gtgaggattg 1800 cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg cagagtattc 1860 gaaatactgc aattttgtgg cccaatcata gggaaactct ttctggatca tggagaggta 1920 ctcttccttg gaagtagagt gtgaaataat gtctcgcatt atttcatctt tggaaggttt 1980 tttttcctta acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt 2040 acctctctca aacatagcca gaggttcctt gagaatgtaa tccctcaccc tgtttactga 2100 cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg agtcggatat 2160 ccttaccggc ttctctgtct gaagcaatgc atgtaaatgc aaacttccat ctttatgtgc 2220 ctcgcgggca catagaatat atttgggaat ccaacgaaca acgagctccc atatcatctg 2280 acaggcgatc tcaggatttt ctggacactt tggataggtt aggaacgtat tagcgttcct 2340 gtgtgagaac tgacggttgg atgaggagga ggccatatcc gacgacggag gatgaggctg 2400 tgggatggca gaatgggagc tctcaactct ataccaaccg gtgcgccttc gaaatccgcc 2460 gccccctctc ttatagtggt tgtgaatggg ccggaccggg ccggcccagc aggaaaagaa 2520 ggcgcgcact aatattaccg cgccttcttt tcctgcgagg gcccggtagg gcccgagcga 2580 tttgatgtaa agcttggtcc tgctttgtat gatttatcta aagcagccca atctaaagaa 2640 accggtcccg ggcactataa attgcctaac aagtgcgatt cattcat 2687 //