Dbfetch
ID EF547090; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC EF547090; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UNak-120, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.83144-0. RX PUBMED; 17947543. RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(Pt 11):3154-3165(2007). XX RN [2] RP 1-2687 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the INSDC. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX DR MD5; 1be0e6124505160703b22b2dec6d099a. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /isolate="UNak-120" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2686..2687,1..304) FT /gene="MP" FT CDS join(2686..2687,1..304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ABQ40218.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 315..1049 FT /gene="CP" FT CDS 315..1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A5JLK9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JLK9" FT /protein_id="ABQ40216.1" FT /translation="MSTSKRKRGDDANWSKRTTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050..1201) FT /note="short intergenic region; SIR" FT gene complement(1202..1663) FT /gene="RepB" FT CDS complement(1202..1663) FT /codon_start=1 FT /gene="RepB" FT /product="RepB" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A5JLL0" FT /protein_id="ABQ40219.1" FT /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN FT SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVDSDRS" FT gene complement(1558..2376) FT /gene="RepA" FT CDS complement(1558..2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JLM3" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLM3" FT /protein_id="ABQ40217.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEITCQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSTPDLLCSESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA" FT misc_feature 2377..2685 FT /note="long intergenic region; LIR" XX SQ Sequence 2687 BP; 686 A; 644 C; 687 G; 670 T; 0 other; ggatccacag aacgccctgt actatcagcc gcgggtaccc acagcagctc cggcatccgc 60 aggagtgccg tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg 120 cttttacttg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcggca 180 aggcagatcc acggaggagc tgatatttgg aggacaagct gtggatagga gcaaccctat 240 ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg 300 ataagcaatc agccatgtcc acgtccaaga ggaagcgtgg agatgatgcg aactggagta 360 agcggacgac taagaagaag ccctcttcag cagggctgaa gagggctgga agcaaggccg 420 ataggccatc cctccaaatc cagacactcc agcatgctgg gaccaccatg ataacggtcc 480 cctctggagg agtatgtgac ctcatcaaca cctacgcccg aggatctgac gagggcaacc 540 gccacaccag cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg 600 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca 660 ctcccggcgg acaagctccg accccgcaaa ctatatttgc ctaccctgac acgcttaaag 720 cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc 780 gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccatcgaatg 840 caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 900 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt 960 tgtacatggt cattgccccc ggcaatggtc ttacatttac tgcccatggg cagacccgtc 1020 tgtactttaa gagtgttggc aaccagtaat gaataaaaac tcctgtttta ttatatctga 1080 tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacacaatca 1140 atacaggggg gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaga acattgaaaa 1200 atcaagatct atctgaatcc actgcctccg taggaggcag ctcaggggga gaataccact 1260 tctcccccgg cgacataatg taaatgacgc aatttgcctc gaaatactcc agctgccctg 1320 gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact 1380 tcttctgcac ctttttcttc ttaccatact tggggtttac aatgaaatcc ctctgacagc 1440 caactaactg tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga 1500 ttgcgtcttc attgtatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta 1560 ggcttctggc ccaagtagat tttcctgttc ttgttgggcc gacgatgtag aggctctgct 1620 ttcttgatct ttcatctgat gactggatac agaatccatc cattggaggt cagaaattgc 1680 atcctcgagg gtataacagg taggttgaag gagcatgtac gcttcgggac taacctggaa 1740 gatgttaggc tggagccaat cattgattga ctcactacaa agtaaatcag gtgtggattg 1800 cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg cagagtattc 1860 aaaatactgc agttttgtgg accaatcata gggaaactct ttctggatca tggagaggta 1920 ctcttctttg gaagtagagt gtgaaataat gtctcgcatt atttcatctt tggaaggctt 1980 cttttcctta acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt 2040 acctctctca aacatagcca gaggttcctt gagaatgtaa tccctcaccc tgtttactga 2100 cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg agtccgatat 2160 tcttaccggc ttctctgttt gaagcaatgc atgtaaatgc aaacttccat ctttgtgtgc 2220 ctctcgggca cagacaatat acttgggtat ccaacgaaca acgagctccc atatcatctg 2280 acaggtgatt tcaggatttt ctggacactt tgggtaggtt aagaacgtgt tcacgttcct 2340 gtgtgagaac tgacggttgg atgaggagga ggccatagcc gacgacggag gatgaggctg 2400 agggatggca gatggggagc tctcaactct ataccaaccg gtgcgccttc gaaatccgcc 2460 gcccctcctc ttatagtggt tgtgaatggg ccggaccggg ccggcccagc aggaaaagaa 2520 ggcgcgcact aatattaccg cgccttcttt tcctgcgagg gcccggtagg gcccgagtga 2580 tttgatgtaa agcttggtcc tgctttgtat gatttatcta aagcagccca ttctaaagaa 2640 accggtcccg ggcactataa attgcctaac aagtgcgatt cattcat 2687 //