ID   EF547089; SV 1; circular; genomic DNA; STD; VRL; 2687 BP.
XX
AC   EF547089;
XX
DT   23-MAY-2007 (Rel. 91, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Maize streak virus isolate UNak-119, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2687
RX   DOI; 10.1099/vir.0.83144-0.
RX   PUBMED; 17947543.
RA   Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L.,
RA   Rybicki E.P., Thomson J.A., Varsani A.;
RT   "Genetic analysis of maize streak virus isolates from Uganda reveals
RT   widespread distribution of a recombinant variant";
RL   J. Gen. Virol. 88(Pt 11):3154-3165(2007).
XX
RN   [2]
RP   1-2687
RA   Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E.,
RA   Thomson J., Martin D.;
RT   ;
RL   Submitted (11-APR-2007) to the INSDC.
RL   Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701,
RL   South Africa
XX
DR   MD5; b5a22b8cc5217081d731d9bb5e3d0efe.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2687
FT                   /organism="Maize streak virus"
FT                   /isolate="UNak-119"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10821"
FT   gene            join(2686..2687,1..304)
FT                   /gene="MP"
FT   CDS             join(2686..2687,1..304)
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="GOA:A5JLB8"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLB8"
FT                   /protein_id="ABQ40214.1"
FT                   /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   gene            315..1049
FT                   /gene="CP"
FT   CDS             315..1049
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A5JLK9"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLK9"
FT                   /protein_id="ABQ40212.1"
FT                   /translation="MSTSKRKRGDDANWSKRTTKKKPSSAGLKRAGSKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   misc_feature    complement(1050..1201)
FT                   /note="short intergenic region; SIR"
FT   gene            complement(1202..1663)
FT                   /gene="RepB"
FT   CDS             complement(1202..1663)
FT                   /codon_start=1
FT                   /gene="RepB"
FT                   /product="RepB"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLL0"
FT                   /protein_id="ABQ40215.1"
FT                   /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV
FT                   DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN
FT                   SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVDSDRS"
FT   gene            complement(1558..2376)
FT                   /gene="RepA"
FT   CDS             complement(1558..2376)
FT                   /codon_start=1
FT                   /gene="RepA"
FT                   /product="RepA"
FT                   /db_xref="GOA:A5JLL9"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLL9"
FT                   /protein_id="ABQ40213.1"
FT                   /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSTPDLLCSESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA"
FT   misc_feature    2377..2685
FT                   /note="long intergenic region; LIR"
XX
SQ   Sequence 2687 BP; 686 A; 644 C; 687 G; 670 T; 0 other;
     ggatccacag aacgccctgt actatcagcc gcgggtaccc acagcagctc cggcatccgc        60
     aggagtgccg tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg       120
     cttttacttg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcggca       180
     aggcagatcc acggaggagc tgatatttgg aggacaagct gtggatagga gcaaccctat       240
     ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg       300
     ataagcaatc agccatgtcc acgtccaaga ggaagcgtgg agatgatgcg aactggagta       360
     agcggacgac taagaagaag ccctcttcag cagggctgaa gagggctgga agcaaggccg       420
     ataggccatc cctccaaatc cagacactcc agcatgctgg gaccaccatg ataacggtcc       480
     cctctggagg agtatgtgat ctcatcaaca cctacgcccg aggatctgac gagggcaacc       540
     gccacaccag cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg       600
     cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca       660
     ctcccggcgg acaagctccg accccgcaaa ctatatttgc ctaccctgac acgcttaaag       720
     cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc       780
     gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccatcgaatg       840
     caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag       900
     tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt       960
     tgtacatggt cattgccccc ggcaatggtc ttacatttac tgcccatggg cagacccgtc      1020
     tgtactttaa gagtgttggc aaccagtaat gaataaaaac tcctgtttta ttatatctga      1080
     tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacacaatca      1140
     atacaggggg gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaga acattgaaaa      1200
     atcaagatct atctgaatcc actgcctccg taggaggcag ctcaggggga gaataccact      1260
     tctcccccgg cgacataatg taaatgacgc aatttgcctc gaaatactcc agctgccctg      1320
     gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact      1380
     tcttctgcac ctttttcttc ttaccatact tggggtttac aatgaaatcc ctctgacagc      1440
     caactaactg tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga      1500
     ttgcgtcttc attgtatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta      1560
     ggcttctggc ccaagtagat tttcctgttc ttgttgggcc gacgatgtag aggctctgct      1620
     ttcttgatct ttcatctgat gactggatac agaatccatc cattggaggt cagaaattgc      1680
     atcctcgagg gtataacagg taggttgaag gagcatgtac gcttcgggac taacctggaa      1740
     gatgttaggc tggagccaat cattgattga ctcactacaa agtaaatcag gtgtggattg      1800
     cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg cagagtattc      1860
     aaaatactgc agttttgtgg accaatcata gggaaactct ttctggatca tggagaggta      1920
     ctcttctttg gaagtagagt gtgaaataat gtctcgcatt atttcatctt tggaaggctt      1980
     cttttcctta acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt      2040
     acctctctca aacatagcca gaggttcctt gagaatgtaa tccctcaccc tgtttactga      2100
     cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg agtccgatat      2160
     tcttaccggc ttctctgttt gaagcaatgc atgtaaatgc aaacttccat ctttgtgtgc      2220
     ctctcgggca cagacaatat acttgggtat ccaacgaaca acgagctccc atatcatctg      2280
     acaggcgatt tcaggatttt ctggacactt tgggtaggtt aagaacgtgt tcacgttcct      2340
     gtgtgagaac tgacggttgg atgaggagga ggccatagcc gacgacggag gatgaggctg      2400
     agggatggca gatggggagc tctcaactct ataccaaccg gtgcgccttc gaaatccgcc      2460
     gcccctcctc ttatagtggt tgtgaatggg ccggaccggg ccggcccagc aggaaaagaa      2520
     ggcgcgcact aatattaccg cgccttcttt tcctgcgagg gcccggtagg gcccgagtga      2580
     tttgatgtaa agcttggtcc tgctttgtat gatttatcta aagcagccca ttctaaagaa      2640
     accggtcccg ggcactataa attgcctaac aagtgcgatt cattcat                    2687
//