ID   EF547074; SV 1; circular; genomic DNA; STD; VRL; 2689 BP.
XX
AC   EF547074;
XX
DT   23-MAY-2007 (Rel. 91, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Maize streak virus isolate UMba-41, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2689
RX   DOI; 10.1099/vir.0.83144-0.
RX   PUBMED; 17947543.
RA   Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L.,
RA   Rybicki E.P., Thomson J.A., Varsani A.;
RT   "Genetic analysis of maize streak virus isolates from Uganda reveals
RT   widespread distribution of a recombinant variant";
RL   J. Gen. Virol. 88(Pt 11):3154-3165(2007).
XX
RN   [2]
RP   1-2689
RA   Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E.,
RA   Thomson J., Martin D.;
RT   ;
RL   Submitted (11-APR-2007) to the INSDC.
RL   Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701,
RL   South Africa
XX
DR   MD5; 39f7e3f01d0623310414e6ec08b357e8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2689
FT                   /organism="Maize streak virus"
FT                   /isolate="UMba-41"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10821"
FT   gene            join(2688..2689,1..304)
FT                   /gene="MP"
FT   CDS             join(2688..2689,1..304)
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="GOA:A5JLB8"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLB8"
FT                   /protein_id="ABQ40155.1"
FT                   /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   gene            315..1049
FT                   /gene="CP"
FT   CDS             315..1049
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q6LBI6"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:Q6LBI6"
FT                   /protein_id="ABQ40153.1"
FT                   /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   misc_feature    complement(1050..1201)
FT                   /note="short intergenic region; SIR"
FT   gene            complement(1202..1663)
FT                   /gene="RepB"
FT   CDS             complement(1202..1663)
FT                   /codon_start=1
FT                   /gene="RepB"
FT                   /product="RepB"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLF9"
FT                   /protein_id="ABQ40156.1"
FT                   /translation="MDGFCIQSSDEGSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV
FT                   DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN
FT                   SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS"
FT   gene            complement(1558..2376)
FT                   /gene="RepA"
FT   CDS             complement(1558..2376)
FT                   /codon_start=1
FT                   /gene="RepA"
FT                   /product="RepA"
FT                   /db_xref="GOA:A5JLC8"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:A5JLC8"
FT                   /protein_id="ABQ40154.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY
FT                   DWATKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA"
FT   misc_feature    2377..2687
FT                   /note="long intergenic region; LIR"
XX
SQ   Sequence 2689 BP; 682 A; 644 C; 698 G; 665 T; 0 other;
     ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc cggcatccgc        60
     aggagtgccg tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg       120
     cttttacctg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcgaca       180
     aggcagatcc acggaggagc tgatatttgg gggacaagct gtggatagga gcaaccctat       240
     ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc caggcacggg       300
     ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg aattggagta       360
     agcgggtgac taagaagaag ccctcttcag ctgggctgaa gcgggctggc agcaaggccg       420
     ataggccatc cctgcaaatc cagacactcc agcatgctgg gaccaccatg ataactgtcc       480
     catccggagg agtatgtgac ctcatcaaca cctatgcccg aggatcggac gagggcaacc       540
     gccacaccag cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg       600
     cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca       660
     ctcccggcgg acaagctccg accccgcaaa ctatatttgc ctaccctgac acgctaaaag       720
     cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc       780
     gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccgtcgaatg       840
     caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag       900
     tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt       960
     tgtacatggt cattgccccc ggcaatggtc ttacatttac tgcccatggg cagacccgtc      1020
     tgtactttaa gagtgttggc aaccagtaat gaataaaaac tcccgtttta ttatatctga      1080
     tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca      1140
     atacaggggg gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaaa acatcgaaaa      1200
     atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga gaataccact      1260
     tctcccccgg cgacataatg taaatgacgc agtttgcctc gaaatactcc agctgccctg      1320
     gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact      1380
     tcttctgcac cttcttcttc ttaccatact tggggtttac aatgaaatcc ctctgacagc      1440
     caactaactg tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga      1500
     ttgcgtcttc gttatatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta      1560
     ggcttctggc ccaagtagat tttcctgttc ttgttgggcc gacgatgtag aggctctgct      1620
     ttcttgatcc ttcatctgat gactggatac agaatccatc cattggaggt cagaaattgc      1680
     atcctcgagg gtataacagg taggttgaag gagcatgtaa gcttcgggac tgacctggaa      1740
     gatgttaggc tggagccaat cattgattga ctcattacaa agtaaatcag gtgaggattg      1800
     cggatgagga ttggtgaact cttcctgaat ctcaggaaaa agcttatttg cagagtattc      1860
     gaaatactgc aattttgtgg cccaatcata gggaaactct ttctggatca tggagaggta      1920
     ctcttccttg gaagtagagt gtgaaataat gtctcgcatt atttcatctt tggaaggctt      1980
     tttttcctta acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt      2040
     acctctctca aacatagcca gaggttcctt gaggatgtaa tccctcaccc tgtttactga      2100
     cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg agtccgatat      2160
     tcttaccggc ttctctgttt gaagcaatgc atgtaaatgc aaacttccat ctttatgtgc      2220
     ctcccgggca catagaatgt acttgggaat ccaacgaaca acgagctccc agatcatctg      2280
     acaggcgatt tcaggatttt ctggacactt tggataggtg aggaacgtgt tagcgttccg      2340
     gtgtgagaac tgacggttgg atgaggagga ggccatagcc gacgacggag gctgaggctg      2400
     agggatggca gactgggagc tccaaactct atagcatacc tgtgcgcctt cgaaatccgc      2460
     cgctcccttg tcttatagtg gttgtgaatg ggccggaccg ggccggccca gcaggaaaag      2520
     aaggcgcgca ctaatattac cgcgccttct tttcctgcga gggcccggta gggcccgagc      2580
     gatttgatgt aaagcctggt cctgctttgt atgatttatc taaagcagcc caatctaaag      2640
     aaaccggtcc cgggcactat aaattgccta acaagtgcga ttcattcat                  2689
//