Dbfetch
ID EF547070; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC EF547070; XX DT 23-MAY-2007 (Rel. 91, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Maize streak virus isolate UMask-23, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1099/vir.0.83144-0. RX PUBMED; 17947543. RA Owor B.E., Martin D.P., Shepherd D.N., Edema R., Monjane A.L., RA Rybicki E.P., Thomson J.A., Varsani A.; RT "Genetic analysis of maize streak virus isolates from Uganda reveals RT widespread distribution of a recombinant variant"; RL J. Gen. Virol. 88(Pt 11):3154-3165(2007). XX RN [2] RP 1-2689 RA Varsani A., Owor B., Shepherd D., Edema R., Monjane A., Rybicki E., RA Thomson J., Martin D.; RT ; RL Submitted (11-APR-2007) to the INSDC. RL Molecular and Cell Biology, University of Cape Town, Cape Town, WP 7701, RL South Africa XX DR MD5; d8ce37ab45dac55cfd9194f4bee3da33. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /isolate="UMask-23" FT /mol_type="genomic DNA" FT /db_xref="taxon:10821" FT gene join(2688..2689,1..304) FT /gene="MP" FT CDS join(2688..2689,1..304) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A5JLE2" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLE2" FT /protein_id="ABQ40140.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVQWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 315..1049 FT /gene="CP" FT CDS 315..1049 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A5JLB9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JLB9" FT /protein_id="ABQ40138.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature complement(1050..1204) FT /note="short intergenic region; SIR" FT misc_feature complement(1202..1663) FT /note="RepB; contains internal stop" FT gene complement(1558..2376) FT /gene="RepA" FT CDS complement(1558..2376) FT /codon_start=1 FT /gene="RepA" FT /product="RepA" FT /db_xref="GOA:A5JLD8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLD8" FT /protein_id="ABQ40139.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTTKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" FT misc_feature 2377..2687 FT /note="long intergenic region; LIR" XX SQ Sequence 2689 BP; 681 A; 637 C; 697 G; 674 T; 0 other; ggatccacag aacgccctgt attatcagcc gcgggtaccc acagcagctc cggcatccgc 60 aggagtgcag tggagtcgcg taggcgaggt agctattttg agctttgttg cactgatttg 120 cttttacctg ctttaccttt gggtgctgag agaccttatc ttagttctga aggctcgaca 180 aggcagatcc acggaggagc tgatatttgg aggacaagct gtggatagga gcaaccctat 240 ccctaatcta ccagcaccac caagtcaggg caatcccggg ccatttgttc cgggcacggg 300 ataagcattc agccatgtcc acgtccaaga ggaagcgggg agatgattcg aattggagta 360 agcgggtgcc taagaagaag ccgtcttcag ctgggctgaa gagggcggga agcaaggccg 420 ataggccatc cctccaaatc cagacactcc agcatgctgg gaccaccatg ataactgtcc 480 catccggagg agtatgtgac ctcatcaaca cctatgcccg aggatctgac gagggcaatc 540 gccacaccag cgagactctc acgtacaaga tcgccatcga ctaccacttc gttgccgacg 600 cggcagcctg ccgctactcc aacaccggaa ccggtgtaat gtggctggtg tatgacacca 660 ctcccggcgg acaagctccg accccgcaaa ctatatttgc ctaccctgac acgctgaaag 720 cgtggccggc cacatggaag gtgagccggg agctgtgtca tcgcttcgtg gtgaaacggc 780 gatggttgtt caacatggag accgacgggc ggattggttc ggacattcct ccctcgaatg 840 caagttggaa gccttgcaag cgcaacatct acttccacaa gttcacgagc gggttgggag 900 tgagaacgca gtggaagaat gtaacggacg gaggagttgg tgccatccag agaggagcgt 960 tgtacatggt cattgccccc ggcaatggtc ttacatttac tgcccatggg cagacccgtc 1020 tgtactttaa gagtgttggc aaccagtaat gaataaaaac tcccgtttta ttatatctga 1080 tgaatgctga aagcttacat taatatgtcg tgcgatggca cgaaaaaaca cacgcaatca 1140 atacaggggg gtagtaggcg ggcggctaag ggtggtgctc ggcgggcaga acatcgaaaa 1200 atcaagatct atctgaatgt actgcctccg taggaggcag ctcaggggga gaataccact 1260 tctcccccgg cgacataatg taaatgacgc agtttgcctc gaaatactcc agctgtcctg 1320 gagtcatttc cttcatccaa tcttcatccg agttggcgag gattattgta ggcttagact 1380 tcttctgcac cttcttcttc ttgccatact tggggtttac aatgaaatcc ctctgacagc 1440 caactaactg tttccaacaa ggacagaatt taaacgggat atcatctacg atgttgtaga 1500 ttgcgtcttc gttgtatgaa gaccaatcaa cattattttg ccagtaatta tgaaccccta 1560 ggcttctggc ccaagtagat tttcctgttc ttgttgggcc gacgatgtag aggctctgct 1620 ttcttgatct ttcatctgat gactggatac attatccatc cattggaggt cagaaattgc 1680 atcctcgagg gtataacagg taggttgaag gagcatgtaa gcttcgggac taacctggaa 1740 gatgttaggc tggagccaat cattgattga ctcattacaa agtaaatcgg gtgaggattg 1800 cggatgagga ttggtgaatt cttcctgaat ctcaggaaaa agcttatttg cagagtattc 1860 aaaatactgc aattttgtgg accaatcata gggaagctct ttctggatca tggagaggta 1920 ctcttccttg gtagtagagt gtgaaataat gtctctcatt atttcatctt tggaaggttt 1980 tttttcctta acttctgaat cagattttcc taggaagggg gacttcctag gaatgaaagt 2040 acctctctca aacatagcca gaggttcctt gaggatgtaa tccctcaccc tgtttactga 2100 cttggcactc tgaatgtttg ggtgaaaccc attaatatca aagaaccttg agtccgatat 2160 tcttaccggc ttctctgttt gaagcaaagc atgtaaatgc aaacttccat ctttatgtgc 2220 ctctcgggca catagaatgt acttcggaat ccaacgaaca acgagctccc agatcatctg 2280 acaggcgatt tcaggatttt ctggacactt tggataggtg aggaacgtgt tagcgttccg 2340 gtgtgagaac tgacggttgg atgaggagga ggccatagcc gacgacggag gctgaggctg 2400 agggatggca gactgggagc tccaaactct atagcatacc tgtgcgcctt cgaaatccgc 2460 cgctcccttg tcttatagtg gttgtaaatg ggccggaccg ggccggccca gcaggaaaag 2520 aaggcgcgca ctaatattac cgcgccttct tttcctgcga gggcccggta gggcccgagc 2580 gatttgatgt aaagcctggt cctgctttgt atgatttatc taaagcagcc caatctaaag 2640 aaaccggtcc cgggcactat aaattgccta acaagtgcga ttcattcat 2689 //