Dbfetch
ID EF545138; SV 1; linear; genomic RNA; STD; VRL; 5834 BP. XX AC EF545138; XX DT 12-JUL-2008 (Rel. 96, Created) DT 12-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Beet soil-borne virus isolate IM segment RNA 1, complete sequence. XX KW . XX OS Beet soil-borne virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-5834 RX DOI; 10.1111/j.1439-0434.2007.01373.x. RX AGRICOLA; IND44079379. RA Wang B., Li M., Han C., Li D., Yu J.; RT "Complete Genome Sequences of Two Chinese Beet soil-borne virus Isolates RT Provide Evidence that the Genome is Highly Conserved"; RL J. Phytopathol. 156(7-8):487-488(2008). XX RN [2] RP 1-5834 RA Han C.; RT ; RL Submitted (10-APR-2007) to the INSDC. RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West RL Road, Haidian District, Beijing 100094, China XX DR MD5; 78f3018d2d08b12e659f2a796e919032. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF01072; TMV_UPD-PK3. XX CC GenBank Accession Numbers EF545138, EF545140, and EF545142 CC represent the complete genome of Beet soil-borne virus isolate IM. XX FH Key Location/Qualifiers FH FT source 1..5834 FT /organism="Beet soil-borne virus" FT /segment="RNA 1" FT /host="sugar beet" FT /isolate="IM" FT /mol_type="genomic RNA" FT /country="China:Inner Mongolia" FT /db_xref="taxon:46436" FT 5'UTR 1..129 FT CDS 130..5466 FT /codon_start=1 FT /transl_except=(pos:3940..3942,aa:OTHER) FT /product="204 kDa protein" FT /note="replicase; contains methyltransferase, helicase, and FT RNA-dependent RNA polymerase domains; putative readthrough FT protein" FT /db_xref="GOA:B4X9D6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B4X9D6" FT /protein_id="ABU63610.1" FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL FT SLFPKNSVIYDIGGNWATHAKCNDGRIVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE FT IPPDIKEKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQWALQSFARWLKFFHGSGVI FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLHEEYNEERRRISDKIIKEK FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN FT AEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV FT RYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQXRCGSKYESITVSD FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQRRM FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPKLQESVNEFEIIENVISKAKT FT VFFDEKFIDASPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERAKFMVFGGDDSLVFFPK FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL FT FRTLFSYKGKLHCTNVSRNFEW" FT CDS 130..3942 FT /codon_start=1 FT /product="145 kDa protein" FT /note="replicase; contains methyltransferase and helicase FT domains" FT /db_xref="GOA:B4X9D7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B4X9D7" FT /protein_id="ABU63611.1" FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLCRVIDDNIKN FT ALKANTKKKTIDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL FT SLFPKNSVIYDIGGNWATHAKCNDGRIVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE FT IPPDIKEKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILMGKTA FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQWALQSFARWLKFFHGSGVI FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLHEEYNEERRRISDKIIKEK FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ FT VNTAVLQRFIEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN FT AEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV FT RYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF FT PKNSCFLSYEGDDNGNWVWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV FT GDKPVISTNSGVYMLCDLTFLMNEMIILKNLQFSLKTRFQKHIPHVTLIDGVPGCGKST FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKV FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK FT RLTYRSPLDVACFLTRKNFYGHFHCYERKSNGRSMSVVGPRDGMTSNYSIPKKKGAQYL FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQ" FT 3'UTR 5464..5834 XX SQ Sequence 5834 BP; 1718 A; 934 C; 1364 G; 1818 T; 0 other; gtattatttt ctcaactgtt atttaccaaa gagaagattt ttataccatt aattttgaga 60 agtctgcttt ttagcaataa atcttttcat attattggtt tgtcttttca tttttacgaa 120 tattctacga tggaatctac aaacattctg acgcaaatta atcgtgatga tataattcag 180 gccgtattaa ctacaagtgc gagtaggact cagtctgctt tacatgaaac tttgtgtagg 240 gtgattgatg ataatattaa gaatgctctt aaagctaaca caaaaaagaa aacaattgac 300 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta tcctgaaaga 360 aaaataatta catccaattc tgaacgtggt actcatagta tggctgcggc tatgcgaaaa 420 attgaaacgg atttagtttt gtcactgttt cctaagaata gcgttatata tgatattggt 480 ggtaattggg cgacgcacgc taagtgtaat gatggaagga tagtgcattg ttgctgtcca 540 atattggatt atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataagttt 600 accagcgatt cttctgagat acctcctgat atcaaagaaa aagcggagat gatagccgag 660 gataacgcca ttataactgc aaatgtgcgg gaaggtgatc tgaattcttc tgctttgaac 720 ggacgttggt tttgccaaaa caagtttgaa gactgtgttt ttgatccgcg tgacattttg 780 atgggtaaga ctgctaagga taatgtaatg gtttatgcca tggcaattca cagtatttat 840 gatataaatg tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta 900 ggtacttttc tgttttctgt ggacatgttg cttggaagaa aaagtggtga attgccatct 960 gttaacgggt tttataagtt ggaaggtgaa tatataaaat acgggtttta cgacgatcca 1020 aattgcggtt acagacataa gttttcttcg cttaaggctt acttaacaaa gacttttgtt 1080 aaagcagcga atggttccgt gttttacctg gagttaactg atttaagggg tgacgtaatg 1140 tactttacta tgacagatgc tacagaggcg cgggcttccg gtattatgaa agatgagtcg 1200 ttcaagtgca ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt tgttgtggat 1260 gaaaccactg acacacttat gtttctcgaa cgcgtattac caaaagattt cgtgcatcgc 1320 gctattgagt atgttaatcg ttgcaaagag aatcagttaa cggttgaaag tattgttagt 1380 tatttgtcgt ctactaataa tgccgtgata attggtgggt ctgcgagaaa agtggaagag 1440 aaggtggatc cttctttgct accgatgatc gcctccactt tgttagttta cagtgaaatg 1500 cagagagcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa gaatacagtt 1560 actattggtg atttgttgaa ccacgctttc cataaggtgt tcggcgccgt tggtgtcggt 1620 cagtgggcgc tgcagagctt tgctagatgg ttaaagtttt ttcacggctc aggggttatc 1680 gagatgaatg acctttttat gtacgtggag attgaagacc gtattaggtt atggtctaag 1740 aaatctcgag agcacgaatt cttcctaacc tttgatgatc tgacagaaaa aagtcgtttg 1800 cacgaagagt acaacgaaga gcgacgtagg atttctgaca agatcattaa ggaaaaaggt 1860 ttgagttcta aagacctttc tttggaagaa gataaggaaa agacggtaga tgaaattctg 1920 gcctggatgg agaaatctga agatttgaag gcttcggaat tgcgttctaa gttaataggg 1980 attcgaaaga atcgtgcacg tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat 2040 acggctgtat tgcagaggtt tatcgaagcg gatgacgatc acttttccac gtgtgcttta 2100 aatactccag gcaagtggtg ggttgatgtc ctgggtgaat ttttaggaaa gacattatca 2160 gaggtttgtg ctactaatat tgttttttct gatatagaac ccaatgataa cgctgaaggt 2220 tttgatactg ttgaatatgc tgatagagac gatatggcta gcgatgtcga aacgtcgatt 2280 agtcagtgcg tcgagtccaa cgatgagtgt gtagacgaag atggttacag ttgcgacggt 2340 gattccaaag ttgagcattc tactttaaac agtaattatg gtgcgttgac gccacctcct 2400 agagaagagg taaaagattc agaggagggc gttgatgtga cagttgaaga cgtatctacg 2460 gatataattg agtcgcattg tgatggaaga tgggctttga tggcggaaga ttctgatttc 2520 gccattgacc agaagcgatc cgaggcgcta aatattatgg aagttagata cgctaaatta 2580 ccgtctaaac cagattactt agaaagtgat gattttagaa tgcgggcaaa gaaagagttt 2640 atctggtact tagaatgtaa gttggtttca gataagtctg caatgactga tattgtgcga 2700 gattatgttt ataacatgta ccataacagt ctttgcgagt ttccgaaaaa ttcttgcttt 2760 ctaagttacg aaggtgatga caacggtaat tgggtttggg gcaggaaacc ggttaggttg 2820 ggccacgctt acgctgttca cttttatgcc gctgattgga agactaactg tcgacttgta 2880 agtttgtcat ggaacaaaga cgaggaagga aatttcgttg gcgataagcc cgttatttct 2940 accaattccg gagtttacat gctatgcgat ttgacatttt taatgaatga aatgatcatt 3000 ttgaaaaatt tgcagttttc gttgaagacc aggtttcaga agcatattcc acacgttaca 3060 cttattgatg gtgtacctgg gtgtggtaaa tcaactcata ttgttaaaga agctagactg 3120 gaaaaccagt acgtactcac tatgggtcga gaagcagctg cagagttgcg agagcgattt 3180 aaaactgtac gcggttcgac cgaggaacag ttgaaaagag tgcggactgt tgattctttt 3240 ttgatgaacg ataaggactc tagggccaaa gttttgcatt tcgacgaggc attgatggcg 3300 catgctggta tggtttactt ttgtgcagat aatttgtctg ctcggacaat tatttgtcaa 3360 ggtgattctc agcagatacc atttattaac cgcgttgaat ccataacttt ggaatacgcc 3420 aagttggaaa taactaacgt ggtggagaaa agacttacct atcgttcccc tttggacgtt 3480 gcctgttttc tgacaagaaa aaatttttat gggcacttcc actgttatga gcgcaaatcc 3540 aacggacgtt ctatgagcgt tgttggtccc cgagatggca tgacgtctaa ctacagtatt 3600 cctaagaaga aaggtgctca atacctcact tttactcaaa gtgagaagga agacatggtc 3660 cgttacctgg gtaagggaca gtggtctgta aacactgtac atgaaagtca aggaaaaact 3720 tacgatgatg ttatattagt taggttgaag cccactgata atgaaattta tcctggtggg 3780 cggaaatcaa aaccttacgt cgtagttggc actacgcggc atagacgcag tttagtgtac 3840 tacacacgtg ctgaggacat tctgtacaga gacataactg aaatgatgag tgtgcaagaa 3900 ggaaaattgc acaaacattt gttcacggag agtactcaat aacggtgtgg gtcgaagtac 3960 gagtcgataa ccgtttccga tcgtccggta agtgttcctg acgttggagc tgttgaagat 4020 ttgcaggtta tgtatgacat tgcttttcct ggcaattcgg ttattgagac gtatttcgac 4080 gggtacgatg ttgcgacggg aggtttagaa atagatattg ctaatataaa atattatccc 4140 aacaagcaaa ggcgaatgtg gcaagaagtt cgcggactta cacctgcttt gcgaactgct 4200 atgccggaga aaaggcagag cggtttgata gagagcgttc tggcgcttaa taagagaaat 4260 atggctgctc ctaagttaca ggaatcggtt aacgaattcg agattattga gaatgtcatt 4320 tctaaggcta aaactgtttt cttcgatgag aaatttattg atgcatctcc gatgaactcc 4380 gtatcaaatt gtcaaaaatg gtgggataaa cagtcagtga ccgcgcagaa acagatgtta 4440 gcggatacta gaattatatc cgaaattgac ttgtgcacat ataacttcat gataaaaaat 4500 gatgttaagc ctaagttgga tttgtcacca cagtcggagt attctgcatt acaaacagtt 4560 gtctatccgg ataaaattgt taatgctatt tttggtcctg tgatgaagga gataaacgaa 4620 agaatattgt tagcgttgcg gcctcatgtt gtgtataaca caaggatgac agccgaagaa 4680 ctagatagat ccgtcgaatt tctcgacgtt cgcgaacaat acgatgctgt tgagattgat 4740 ttttctaaat ttgataaatc aaaaacttct ttacacatta gggcagtgat agaattatac 4800 aagatctttg gtcttgacga tatgttagcc tttttatggg agaagtcaca atgtcagact 4860 acaattcgtg atcgtcagaa tggactgatt gcgcatatac tttatcaaca aaaatctggt 4920 aactgtgata catacggttc taatacttgg tcggctgctc ttgctctttt ggatgcgtta 4980 ccacttgagc gagctaagtt catggtattt ggcggtgatg attctcttgt gtttttccca 5040 aaaaatatga atttggctga cccttgtggt aggttggctt ctctttggaa tttcgattgt 5100 aaatttttta actttcaaaa caacatgttt tgtggtaagt ttcttttaaa gattggagaa 5160 aattataagt ttgcgccgga tccttttaaa ttacttacaa aacttggtag gaaagatata 5220 aaaaacgata ttttgcttag tgaaattttt atttctataa gcgataatta ccgttcttat 5280 catgactaca gagttttaga agctttaaac gtggcggtcg tcgaacgtta taaattatct 5340 caagacgttt tgttcggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc 5400 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag aaattttgaa 5460 tggtaaaatt tctttggttc tccgttttgt gagtctaaga tcattatttt gtgtaatttg 5520 gtgtgaagag atacagtcta ttcgtacttg taaatgatta tttgagctga tcactcaacg 5580 tggatttcac gatagaaatc ggtgtttttc attccaccta aatcgaaatg tactacggta 5640 gcgcgaacct tatcgcgcag tgttttgaag tccacttaaa tagaacttct ttccacggtc 5700 tctttcgcta ctgaattaat tataaaaact tcagtattcg atttatgcag atgagagtag 5760 tatctctcga tcatcaagac acgatgattc tgtggggtgc aaatcccccc ctttacttga 5820 gggaaatcaa gccc 5834 //