Dbfetch
ID EF544601; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC EF544601; XX DT 16-JUL-2007 (Rel. 92, Created) DT 18-JUL-2007 (Rel. 92, Last updated, Version 2) XX DE Alternanthera yellow vein virus isolate F21 segment DNA A, complete DE sequence. XX KW . XX OS Alternanthera yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Jia S., Wu Z.; RT "Characterization of Eclipta-infecting begomoviruses (genus begomovirus, RT family geminiviridae) from Fujian, China"; RL Unpublished. XX RN [2] RP 1-2740 RA Wu Z., Jia S.; RT ; RL Submitted (09-APR-2007) to the INSDC. RL Key Laboratory of Biopesticide and Chemical Biology, Ministry of Education, RL Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China XX DR MD5; 0db423519a710d7c2d36381fa48d4512. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Alternanthera yellow vein virus" FT /segment="DNA A" FT /isolate="F21" FT /mol_type="genomic DNA" FT /country="China" FT /collected_by="Suping Jia" FT /collection_date="10-Oct-2005" FT /db_xref="taxon:337826" FT gene 149..496 FT /gene="av2" FT CDS 149..496 FT /codon_start=1 FT /gene="av2" FT /product="AV2" FT /db_xref="GOA:A7KRP1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A7KRP1" FT /protein_id="ABS12049.1" FT /translation="MWDPLVNEFPETVHGFRCMLSIKYLQLLSEGYSPDTVGYDLIREL FT ISIVRSRNYVEASCRYRNFYPRVEGASSSELRQPLLNPCSCPHCPRHKISHVGEQAHES FT QAQNVQDVQKP" FT gene 309..1079 FT /gene="cp" FT CDS 309..1079 FT /codon_start=1 FT /gene="cp" FT /product="CP" FT /db_xref="GOA:A7KRP2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A7KRP2" FT /protein_id="ABS12050.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWA FT NRPMNRKPRMYRMYKSPDVPYGCEGPCKVQSFEKKHDVSHTGTLLCVSDVTRGSGITHR FT VGKRFCVKSIYIIGKIWMDENIKSKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNEP FT STATIKNDLRDRLQVLHRFSATVTGGQYASKEQAMIKRFWRINNHVVYNHQEKAAYENH FT TENALVLYMACTHASNPVYATLKIRIYFYDSVMN" FT gene complement(1076..1480) FT /gene="ac3" FT CDS complement(1076..1480) FT /codon_start=1 FT /gene="ac3" FT /product="AC3" FT /db_xref="GOA:A7KRP3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A7KRP3" FT /protein_id="ABS12051.1" FT /translation="MDSRTGEYITAAQAENGVYTWEITNPLYFKIIKHDSRPLLREHDI FT ITVQIQFNYNLRKALGIHKCFLTCQIWTRLQPQTLSFLRVFKTQVMKYLDNLGVICLNN FT VIRAINHVLWNALHHTLYVNFNHIIKFNIY" FT gene complement(1221..1625) FT /gene="ac2" FT CDS complement(1221..1625) FT /codon_start=1 FT /gene="ac2" FT /product="AC2" FT /db_xref="GOA:A7KRP4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A7KRP4" FT /protein_id="ABS12052.1" FT /translation="MRPSSPSNSHCTQVPIKVQHRLAKRKPRRRRVDLRCGCSLYISID FT CHNYGFTHRGVHHCSSGREWRVYLGNNQSPVFQDHQTRQQATPTGTRHHYSSDTVQLQP FT PEGFGDTQMFSDLPDLDSLTTSDIEFLKGL" FT gene complement(1528..2613) FT /gene="ac1" FT CDS complement(1528..2613) FT /codon_start=1 FT /gene="ac1" FT /product="AC1" FT /db_xref="GOA:A7KRP5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A7KRP5" FT /protein_id="ABS12053.1" FT /translation="MRQPEQFRLNRKNFFLTYSQCPISKEEALQQLINTQTPVNKKFIR FT VCKELHEDGNPHLHALVQFEGKFCITNPRFFDLQSPNSSTQYHCFITDAKSSSDVEAYI FT EKDGDILDWGTFQIDGRSARGGQQTANDAYARAINTGNKEQALDVIRELAPKDYVLQFH FT NLNGNLERIFMPPTQEYISPFNCSSFDQVPEEIEEWAADNVMSAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNDAWYNIIDDVDPHYVKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNIGLKNWALKNATFVTIKQPL FT YSGSHQSPTQASQEETSQTEG" FT gene complement(2166..2456) FT /gene="ac4" FT CDS complement(2166..2456) FT /codon_start=1 FT /gene="ac4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A7KRP6" FT /protein_id="ABS12054.1" FT /translation="METLISMLLCNSKASSASRIRDSSTYSPPIPPPNTTASSPMRSPV FT QTLRHTSRKMETYLTGVPSRLMEGLQEGDSRQQTMLTQEQLTQAIRNRLLM" XX SQ Sequence 2740 BP; 701 A; 566 C; 631 G; 842 T; 0 other; accgatggcc aaaaaaaaat ttatgccggc cccacctggc ggcttttgtc tgccactaga 60 caatcccgtc caatcagatg acgcgctgaa agcttaaata attttcccgc tgttataaat 120 acttcgggcc taagtatctg ctttgaaaat gtgggatcca cttgtaaacg agtttcccga 180 aacggttcac gggtttcggt gcatgctttc tatcaaatat cttcagttac tctctgaagg 240 ctattcgcct gatacggttg gttacgatct aatacgtgaa ttaatttcaa ttgtgcgttc 300 taggaattat gtcgaagcgt cctgcagata tcgtaatttc tacccccgcg tcgaaggtgc 360 gtcgtcgtct gaacttcgac agcccttact caacccgtgt agctgtcccc actgtccgcg 420 tcacaaaatc tcgcatgtgg gcgaacaggc ccatgaatcg caagcccaga atgtacagga 480 tgtacaaaag ccctgatgtg ccttatggct gtgagggtcc gtgtaaggtc cagtcatttg 540 aaaaaaaaca tgacgttagt catactggca cgttgttgtg tgtctctgat gttaccagag 600 gtagtgggat tacgcataga gtagggaagc gtttctgtgt caagtcaatt tacatcatag 660 ggaagatatg gatggacgag aacattaagt ccaagaatca tactaacacg gtcatgttct 720 ggttagttag ggatcgtcgc ccagttacaa cgccttatgg ctttggtgag gcgtttaata 780 tgtatgacaa tgagccctct accgcaacta tcaagaacga tctgcgtgat cgtttgcagg 840 tgttacacag gttttctgcc acagttactg ggggtcagta tgcgtctaag gagcaggcta 900 tgatcaagcg tttctggagg attaacaacc atgtggttta caaccatcag gagaaggcag 960 cttatgaaaa tcatactgag aatgcattag tattgtatat ggcttgtact catgctagca 1020 atcctgtgta tgctacgctg aaaattagaa tatatttcta tgattctgta atgaattaat 1080 aaatattgaa ttttattata tgattgaagt ttacatacag cgtgtggtgc aatgcattcc 1140 atagtacatg atttattgct ctaattacat tgttaagaca aattacacca agattatcta 1200 aatacttcat aacctgggtc ttaaagaccc ttaagaaact caatgtctga ggttgtaagc 1260 gagtccagat ctggcaagtc agaaaacatt tgtgtatccc caaagccttc cggaggttgt 1320 agttgaactg tatctgaact gtaatgatgt cgtgttcccg taggagtggc ctgctgtcgt 1380 gtttgatgat cttgaaatac aggggattgg ttatttccca ggtatacacg ccattctctg 1440 cctgagctgc agtgatgtac tcccctgtgc gtgaatccat agttgtgaca gtcaatggag 1500 atgtatagtg aacagccgca acgcagatca accctccgtc tgcgaggttt cctcttggct 1560 agcctgtgtt ggactttgat gggaacctga gtacagtggc tgtttgatgg tgacgaaggt 1620 cgcattcttt agggcccagt tttttagccc tatgtttttt tcctcgtcaa ggaactcttt 1680 ataggaggat gtcggaccag gattgcagag gaagattgtt gggatcccgc ctttaatttg 1740 aacgggcttc ccgtacttag tattggactg ccaatccctt tgggccccca tgaattcctt 1800 gaaatgtttc acataatgag gatctacatc gtctattatg ttataccagg cgtcattgct 1860 gtaaacccta ggacttaggt caatatgacc acataggtaa ttatgtggac ctaatgatct 1920 agcccacatt gttttaccag tcctgctgtc accttctatg actatactta ttggtctcca 1980 gggccgcgca gcggcagaca ttacattgtc tgcggcccat tcctcaattt cttcagggac 2040 ctgatcaaac gatgaacaat taaaaggact aatgtattct tgagttggag gcatgaagat 2100 gcgctccaga tttccattta aattatgaaa ttgtaataca taatccttag gagctaactc 2160 tcttattaca tcaagagcct gttccttatt gcctgtgtta attgctcttg cgtaagcatc 2220 gtttgctgtc tgctgtcccc ctcttgcaga ccttccatca atctggaagg taccccagtc 2280 aagtatgtct ccatctttct cgatgtatgc ctcaacgtct gaactggact tcgcatcggt 2340 gatgaagcag tggtattggg tggaggaatt gggggactgt aggtcgaaga atctcggatt 2400 cgtgatgcag aacttgcctt cgaattgcac aagagcatgg agatgagggt ttccatcctc 2460 gtgtaattcc ttacaaaccc taatgaattt cttgttcact ggggtttggg tgttgattaa 2520 ttgctgtagt gcctcttctt tagagatagg gcactgtgag taagtgagga agaagttttt 2580 tctatttaat ctaaattgct caggctgacg catgatgacg tatctgttca cccgatgggt 2640 gctccttcaa aactcttagt caatgggtga atgggtgtat aatatatagt ggggattttt 2700 ccggaataaa aaattttttt ttggccatcg tactaatatt 2740 //