ID EF534293; SV 1; linear; genomic RNA; STD; VRL; 3916 BP. XX AC EF534293; DQ004850; XX DT 17-SEP-2007 (Rel. 93, Created) DT 17-SEP-2007 (Rel. 93, Last updated, Version 1) XX DE Raspberry ringspot virus isolate RAC815 segment RNA2, complete sequence. XX KW . XX OS Raspberry ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3916 RX DOI; 10.1007/s00705-005-0665-z. RX PUBMED; 16328136. RA Wetzel T., Ebel R., Moury B., Le Gall O., Endisch S., Reustle G.M., RA Krczal G.; RT "Sequence analysis of grapevine isolates of Raspberry ringspot nepovirus"; RL Arch. Virol. 151(3):599-606(2006). XX RN [2] RP 1-3916 RA Wetzel T., Krczal G.; RT "Molecular biology of Raspberry ringspot nepovirus"; RL Plant Viruses 1(1):45-51(2007). XX RN [3] RP 1-3916 RA Wetzel T., Ebel R., Moury B., Le Gall O., Endisch S., Reustle G.M., RA Krczal G.; RT ; RL Submitted (12-APR-2005) to the INSDC. RL Agrosciences gGmbH, RLP, Breitenweg 71, Neustadt An Der Weinstrasse 67435, RL Germany XX RN [4] RP 1-3916 RA Wetzel T., Krczal G.; RT ; RL Submitted (02-APR-2007) to the INSDC. RL AlPlanta - Institute for Plant Research, RLP Agroscience, Breitenweg 71, RL Neustadt an der Weinstrasse 67435, Germany XX DR MD5; 732df0fb88ef28cd3ffa8b346ac444bd. XX CC On Sep 16, 2007 this sequence version replaced gi:67038566. CC Name: Raspberry ringspot virus. XX FH Key Location/Qualifiers FH FT source 1..3916 FT /organism="Raspberry ringspot virus" FT /segment="RNA2" FT /host="grapevine" FT /isolate="RAC815" FT /mol_type="genomic RNA" FT /country="Switzerland" FT /db_xref="taxon:12809" FT CDS 198..3518 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q20LA0" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q20LA0" FT /protein_id="AAY63801.2" FT /translation="MSQFWGEFPEAVINTFQRLQIALIGDIKKCPLSSPLFPELSKLDA FT HSQHHLLASFELPRFGGVTPGVMEQLHDAESELVEAKARLLRERLHAVANKENIPYLGD FT CMYYDAPGINQDELLQAAFLEAPTPEWESDRIRPFWPKDEWFRDAEQGPYPEDYGNIPL FT GDLDTLCLAFDALVEEHWMPIYLMISTFAMYQQYGTHPLLLECVQSAGSLIPACMMTDH FT HLQPTGDRQADKEERQDYADGQDSIQSMGDFWKEFYAKDSGKKIPDSHKSRLANDPNKV FT GFTKSALFHKQPLAHSLAQTWANFRGTQDKADLVKVTMDMNIEKYIVRLPDAVRTTAGP FT LYIEWINLPRMSENSARKLAEAGWNNADICGVDLAVKSHVAVGTPVRVIISLVDGACAD FT MPTATMCAFEVNLASQNNRSLNLPLLSLPFSRLLADLHDFQHRVKIACQFRDPEGFNVG FT TPMLSFSSLEFSELKQTAFERNSLLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEINP FT PLKEYAPLVLPPVPQPQRNFIDQQSGEVVKPWIQKTRSMRFKSPTDLWSRPSVDGGSTS FT TTGKNGLRCGDDIPGCAYEVDPLHLLYYESVNVPRDTLEGTRLARIDLRAKAQEMDSAV FT WRQWVKDGCMKPRIKVRISAASSCFSGVVLGICFDAYRRIPVNRDKGFSANLITGLPNT FT LWATRNQSDLEWDLDLSQECGHSFYALSDALGYMDFIVYVLRGNELTAVADWTFYLAFY FT VDWAQESSSTLLTPTLVWPPTPDIISTFREVRGPFSFSLDGTREQLDFGFLPGVPLVEG FT TTTVRTFHRVLANFYRAWTGKIRISIEEVSSIFLTGTYMVGVAWNATDSLGSIVSRRHW FT IVKSGEIFDLDLYGPYGEYPTFAGKQNGIPHIVVQKIGGIVGPKDSTGSFGFFVHIHGM FT TGVYKNPTLHSSEKGQMHAWFRVHNILVDNLSFNIPGRIEDIRALAGSYDTTNYVNPTS FT LLFSVTGLHGGVIRLHITWSPKTTLGESKGTLKYMQYLYNTSTNNYFGDQATRGLIDLE FT GFYCELRCGDFFGATNVNVAGDVEGLAIHSANATSIAQICVSFEILEMNFYGKTIKVS" XX SQ Sequence 3916 BP; 926 A; 845 C; 953 G; 1192 T; 0 other; tttgtctcaa atctcagtct cattgttggt gctctctcat ctctatctct attctctctc 60 aacgatattt gtgatctcat ctctaatctc actgatattt gatacaacgt aaagttttag 120 aagtttcctt ttaattgttc aataaacttc caacccattt tctctcctct cttcggacat 180 tgtgtactac tggtacaatg tcccagttct ggggagaatt ccccgaggcg gtgatcaaca 240 cctttcagcg ccttcaaata gcgctgatcg gtgatatcaa gaaatgtccc ctctcctccc 300 cccttttccc cgagctttct aagctcgatg cgcactccca gcatcatttg ctggcctcct 360 tcgaacttcc caggttcgga ggagtcactc ctggcgtcat ggagcaactc catgatgcgg 420 agtctgagct ggtggaagcc aaggctagac tccttcgcga acggctacac gcggtagcca 480 ataaggagaa catcccctac cttggggatt gtatgtatta tgatgcgcct ggcatcaacc 540 aggatgagct gctccaagca gctttcctgg aagctcccac acctgagtgg gagagtgatc 600 gcattaggcc cttttggcct aaggatgaat ggtttaggga cgccgaacaa ggtccctacc 660 ctgaggatta tggtaatatc cctctgggtg atttggatac gttatgtctg gcttttgatg 720 cccttgtgga ggagcattgg atgcccattt acctcatgat ctccacattt gccatgtatc 780 agcagtatgg tactcatcca ttactactgg aatgtgtgca gtctgcaggt agtctgattc 840 ctgcatgtat gatgacagac catcaccttc aaccgacggg tgataggcaa gccgacaagg 900 aagagcggca ggattatgcg gatggccaag actctattca gagtatgggt gatttctgga 960 aagaattcta tgcaaaggat tccggaaaga agatacctga ctctcataag tcaaggttag 1020 ccaatgatcc caataaagtt ggtttcacca agagtgcgct gtttcataaa cagcccctgg 1080 cgcattcatt ggctcaaaca tgggcaaatt ttaggggcac acaagacaag gcggacttgg 1140 tcaaggtgac catggacatg aatatagaga aatatatagt ccgtcttcct gatgcagtgc 1200 gtaccacggc gggtccattg tacattgaat ggattaactt gccgcgcatg tccgagaatt 1260 ccgcacgcaa actggctgag gctgggtgga ataatgcaga tatttgtggt gtggaccttg 1320 ctgttaaatc acatgtagct gttggcacgc ctgtacgtgt tatcatttct cttgtggatg 1380 gagcatgtgc tgatatgcca actgccacta tgtgtgcctt tgaggtgaac ttggcttctc 1440 agaacaatag atctttgaat ttgccattgt tgagtttgcc attttcccgc ctactggccg 1500 atttgcatga ttttcaacat cgtgtcaaga ttgcttgtca gtttcgtgat cctgaaggat 1560 ttaacgtggg tactcccatg ttgagttttt cttcacttga gttttctgag ttgaaacaga 1620 ctgcctttga gcgaaattct ttactcaggg actcttggtc cgagattgaa aagcgtgctt 1680 gtcatggtgg aggacgttgt gttgcttctc agggtattgt gcagacctgg gaaaaggaga 1740 ttaatcctcc tttgaaagaa tatgcaccct tggttttgcc ccccgttccc caacctcaga 1800 ggaattttat tgatcaacaa tccggggagg ttgtaaagcc atggattcaa aaaacccgct 1860 ccatgcgatt taaatcgccg accgatttgt ggagccggcc ctctgtggat gggggatcaa 1920 catctactac tgggaagaat ggtttgcgtt gtggtgacga tataccaggg tgtgcttatg 1980 aggttgatcc tctgcatctt ttatattatg agagcgtaaa tgttcccagg gacactcttg 2040 aaggcacacg tctcgcgcgt attgatttgc gtgcaaaagc gcaggaaatg gatagtgccg 2100 tgtggcgcca atgggtgaag gatggctgta tgaaaccacg cattaaggtg cgtatttctg 2160 cagcttcctc ttgcttttct ggagtcgttt tgggaatctg ttttgacgct tatcgcagaa 2220 tacctgtcaa tcgggataag ggttttagcg ctaatctcat tacaggtctc cctaacactc 2280 tatgggctac acgtaatcag tccgatcttg agtgggacct tgacttgagt caagaatgtg 2340 ggcacagctt ttatgcttta tcggatgcct tagggtatat ggactttata gtctatgttc 2400 tcagaggtaa tgaattgacg gctgttgcag actggacttt ctatcttgct ttctatgttg 2460 attgggcaca agagagttcc tccacgttgt taacacctac tctggtatgg cctccaacac 2520 cagacataat aagtactttt cgggaggtgc ggggtccatt ttccttcagc ttagatggca 2580 caagggagca actcgacttt gggtttttac ctggtgtccc tcttgttgag gggactacaa 2640 ctgtacggac tttccatcgt gttctggcta atttctatcg tgcttggact ggcaagataa 2700 gaatttccat tgaggaggtt tcttctatct tccttactgg tacatacatg gtaggagttg 2760 catggaacgc aacggatagt cttggcagta ttgtatcccg tagacactgg attgtaaagt 2820 ctggggaaat ttttgaccta gacttatatg ggccctacgg agaatatcca acttttgcag 2880 gcaaacagaa tggcattccg catattgtag tgcaaaagat tggtggcatt gtgggaccta 2940 aagattcaac cggatctttt ggtttcttcg tgcatatcca tggcatgaca ggtgtttaca 3000 agaaccctac tctccatagt tcagagaagg ggcagatgca tgcatggttt cgcgtacaca 3060 acatcttggt agacaatttg tctttcaaca taccaggaag gattgaagat ataagagcgc 3120 tagctgggag ttatgatacc accaattatg tgaatcccac tagtcttttg ttttctgtca 3180 ccggcctaca tggcggggtg attaggttgc atataacctg gtcccccaaa accacactgg 3240 gtgaatccaa gggaaccctc aaatatatgc agtacttgta caatacaagc actaataact 3300 attttgggga tcaagccaca cgcggactta ttgaccttga gggtttttat tgtgagttgc 3360 gttgtggcga tttctttggt gccactaatg tcaatgtggc tggtgatgtt gaggggttgg 3420 ctattcattc tgccaacgcc acctccattg cacaaatatg tgtttccttt gagattcttg 3480 aaatgaattt ctatgggaag actattaagg tatcgtgagg tggtttacta tcagcaaccc 3540 tgcggctccg ggttaattga gccaactaaa gctgtgccat gtgagtttgt gttttacaca 3600 tggcccctat gagtctagac aacttgtagg ttcagcgata ctgttaaagg tctttcttct 3660 ggtggtgacg tgccagaaca gtatgacgtt tttttccaat ttgtcaggaa attggaaccg 3720 attgcagagt cggtggtgta aaggtgtgct acggcttgtt ccgtaggcat aataaaccga 3780 gtttatctgt tttaatgctt tgagtcatag ttagtttctt tctgttgctc cctctttgag 3840 gttgtgcctt tagcaagcac gcaaaatatg catttatttt tgttcttaag cttccttagt 3900 gtcgttctgt ccgagc 3916 //