ID EF529625; SV 1; linear; genomic RNA; STD; VRL; 2971 BP. XX AC EF529625; XX DT 01-APR-2008 (Rel. 95, Created) DT 03-APR-2011 (Rel. 108, Last updated, Version 2) XX DE Tobacco bushy top disease-associated RNA, complete sequence. XX KW . XX OS Tobacco bushy top disease-associated RNA OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses. XX RN [1] RP 1-2971 RA Mo X.H., Chen Z.B., Chen J.P.; RT "Molecular identification and phylogenetic analysis of a viral RNA RT associated with the Chinese tobacco bushy top disease complex"; RL Ann. Appl. Biol. 158(2):188-193(2011). XX RN [2] RP 1-2971 RA Mo X., Chen Z., Chen J.; RT "A small RNA resembling the Beet western yellows virus ST9-associated RNA RT is a component of the Tobacco bushy top disease complex"; RL Unpublished. XX RN [3] RP 1-2971 RA Mo X., Chen Z., Chen J.; RT ; RL Submitted (29-MAR-2007) to the INSDC. RL Plant Protection, Yunnan Tobacco Science Research Institute, Nie'er Road, RL Yuxi, Yunnan 653100, China XX DR MD5; 2d08816980fe04872294555fd7a94f74. XX FH Key Location/Qualifiers FH FT source 1..2971 FT /organism="Tobacco bushy top disease-associated RNA" FT /host="tobacco" FT /mol_type="genomic RNA" FT /country="China" FT /note="similar to Beet western yellows virus ST9-associated FT RNA" FT /db_xref="taxon:460946" FT gene 9..2375 FT /gene="ORF1b" FT CDS 9..2375 FT /codon_start=1 FT /transl_except=(pos:792..794,aa:OTHER) FT /gene="ORF1b" FT /product="putative RNA-dependent RNA polymerase" FT /note="translated by readthrough of stop codon at codon FT 262" FT /db_xref="GOA:B2BJG8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B2BJG8" FT /protein_id="ABV01917.1" FT /translation="METARGLLDALGDPCDHVVRAFKARPVIHSFDQVVHAFSAENPFS FT GCSERVALAVPHIIMGNSPLERLLELLATSRRVVAQFKRSIIDWAHRNSIYLGLSAATS FT AAALVLVERWRLSQAPPMQEEPVRLEDCLEIDDPDLPLLXXTVPDEPTIDRARAQLAIR FT KRVTRRVRPNSTARFIRVLRAEVKATVGTPTYTAANVAVIRHIVEKYAKEYNIRTSSYS FT HLMGDVISAVMTPYKSEYRQAAYCGSLTSRLRRWLVELKXGGLQLVGGYEHDMPDLTNV FT PGLDPRQLRPSIVXYNKEFRRIVAPSYNYGVTYFNNSRANLLRGLVNRVLTYKGGPILE FT PSPGSWRSLSPLARKIGIRCRTSPMSPDEFLACYAGRKRTIYTKALRSLEDTPLNNKDF FT VVRAFLKKEKDKLLSSSSDPRIIQPRHPRFLVSFGRYIRPLEQKCYKAFSSLFQRFAVS FT RTPVCFKGLNYLRRGEMLLKKWESFVNPVAICLDASRFDLHVSVEALQYTHILYYTAFG FT RDPLLMQLLENRLETRGVAICKEGSYRYKKKGGRCSGDNDTSLGNVIIMLSITYHLLEG FT LPFPHIEVANDXDDQVLIVEKENELALLEAVEPCFAKFGFRLTVEQPVYEFERIDFCQT FT RPVRLSPDVTTMVRHPRLAMTKDLTSFIPIERGLMKYHMLSAIGACGKACYNDIPVLGA FT MYRKLESVGRAAGGREEXWWASTNANPDFQRLSSKAATNVGLTVEARVSFWKAFDILPD FT HQTALEREWENWKPDFELATVPVFVGTYAVVDGDV" FT gene 9..794 FT /gene="ORF1a" FT CDS 9..794 FT /codon_start=1 FT /gene="ORF1a" FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:B2BJG9" FT /protein_id="ABV01916.1" FT /translation="METARGLLDALGDPCDHVVRAFKARPVIHSFDQVVHAFSAENPFS FT GCSERVALAVPHIIMGNSPLERLLELLATSRRVVAQFKRSIIDWAHRNSIYLGLSAATS FT AAALVLVERWRLSQAPPMQEEPVRLEDCLEIDDPDLPLLXXTVPDEPTIDRARAQLAIR FT KRVTRRVRPNSTARFIRVLRAEVKATVGTPTYTAANVAVIRHIVEKYAKEYNIRTSSYS FT HLMGDVISAVMTPYKSEYRQAAYCGSLTSRLRRWLVELK" XX SQ Sequence 2971 BP; 745 A; 715 C; 801 G; 701 T; 9 other; ggggattcat ggagacagct agaggtttac tagacgccct aggagatcca tgtgaccatg 60 tggttcgggc tttcaaggca cgacctgtca ttcatagttt tgaccaggtt gtacatgcct 120 tctcagctga aaaccccttc tctggttgta gtgagagggt ggcattagct gtaccccata 180 tcattatggg gaatagtcca ttagagcggc tattggagct gctcgccacg tctaggaggg 240 tggtcgccca gtttaagcgg tctataatag actgggccca ccgtaatagc atatatttag 300 gattgtcggc agcaactagt gcagccgctt tagtattagt agagagatgg aggctttctc 360 aagccccccc catgcaagag gaaccagtgc ggttggagga ctgcctggag atagatgatc 420 ctgacctccc cctcctggra cwaactgtgc cagatgagcc caccatagac agagctaggg 480 ctcagctggc cattagaaag agggttaccc gcagagtgag gcccaattca actgctagat 540 ttataagggt cctcagagcc gaggtgaagg ctacggtcgg aacgccaacc tacacagctg 600 cgaacgtggc tgtgattagg cacatagtcg agaagtatgc caaggagtac aacattagaa 660 catcctcgta ctcccacctt atgggcgatg tgatcagcgc ggtcatgact ccttacaagt 720 cggagtacag gcaggctgcg tactgcggaa gtctcacgag ccgcctacgg cggtggctcg 780 ttgagcttaa ataggggggc ctacagttgg tgggtgggta cgagcacgat atgccagatc 840 ttacaaatgt acccggcctg gacccacgac aattgaggcc gtctatagta grgtataaca 900 aggaattccg tcgtatagtg gcacctagct acaactacgg agtgacttat tttaataata 960 gtagagctaa cctactgagg ggtcttgtca acagggtgtt gacatacaag ggtggaccta 1020 ttctcgagcc tagtccgggc tcctggaggt crctttcccc gcttgcaagg aagataggta 1080 ttaggtgcag aacctccccg atgagcccag atgaatttct ggcgtgctat gcgggacgta 1140 aacgtaccat ctataccaag gcccttcgca gcttggagga cacccccctc aacaataaag 1200 attttgtggt tcgggccttc ttaaagaagg agaaagataa actgctgagt agcagctccg 1260 atcccagaat aattcagcct cgacacccga ggttcttagt tagttttggt agatacatca 1320 gacctctgga acagaaatgc tataaggctt tctcatcact gttccagcga tttgccgtgt 1380 ctcgaacccc tgtttgcttt aaaggtctta attacttgcg caggggcgag atgctcttaa 1440 agaagtggga aagcttcgtt aaccccgtgg cgatttgctt agacgcatct cgttttgacc 1500 tccacgtgtc ggttgaagca ctccagtaca cccacatatt gtattacacg gcattcggta 1560 gagatccctt gctcatgcaa ctattggaga accgcctgga aacccgcgga gtagctattt 1620 gcaaggaagg atcctacagg tacaagaaga aaggtgggcg ttgctcaggg gacaatgaca 1680 catcgttggg caacgtgatt ataatgctat ctataaccta ccatcttctt gagggactgc 1740 cttttccaca catcgaagtc gcgaacgacr gagatgatca agtgctcatt gtggaaaaag 1800 agaatgagtt agccctgctg gaggcagttg agccctgctt cgcaaaattt gggttccggc 1860 taaccgtcga acagccagtt tatgaatttg agcgcataga cttttgccag actcggcctg 1920 ttcgattgag tcccgatgtg acaactatgg tccgacatcc acgcctcgcc atgacgaaag 1980 atttgacctc cttcatcccg atcgaacgtg ggttgatgaa gtaccacatg ctaagcgcaa 2040 taggtgcgtg tggtaaggct tgttataatg atatacccgt gctcggagca atgtacagaa 2100 agctcgagag cgtgggacga gcagccggag gtagagaaga aaratggtgg gcgtcaacga 2160 atgcaaaccc cgacttccag agattatcaa gcaaagcagc gaccaacgta ggacttactg 2220 ttgaagctcg cgtatcgttt tggaaggcat tcgacattct ccccgatcac caaaccgctc 2280 tagaaagaga atgggagaat tggaaaccgg actttgagtt ggctaccgtt cctgtttttg 2340 taggaaccta tgctgtagta gatggtgatg tttaaattta gaccagtcgc ccccatcctc 2400 cgctggacgg gggggaagac ccgtggccgc ggtgttatgc taggaactcc cacgtaagtg 2460 gatcggccca aaccatcgaa gtagcatagt taattgtaca cgtgtttagt ctagtttagg 2520 atcgagtctt aaggcagccc cttgccaggt tgcgactagg gggccatcag tcctggcaca 2580 cccgttggtc agctcgtaac tactctcgtt ggatcgagag gacaatccga gtagaggcag 2640 agaagggcct ccggwatgac cataccgtaa tagccggacg catagctatt cgggctgggg 2700 acgtcatacc cagtgcgaca ggccccgcag ttgggctagg acacttgtcc cggccgtttc 2760 tccaagtggc gcgttgcaat cagcaaactc ttccgctaga gtattgctta gtagtaggct 2820 cttagccaac ctctttcaat gtaagaggay agcarcgttt tggtcggagg agagaccgtc 2880 gcacctgaac tccatcactg ggaaactcca gtgagggcga taggagattc aggaggtttg 2940 gaaacacttt gtttaccagg tacaccgccc c 2971 //