ID EF529624; SV 1; linear; genomic RNA; STD; VRL; 5920 BP. XX AC EF529624; XX DT 01-APR-2008 (Rel. 95, Created) DT 28-OCT-2010 (Rel. 106, Last updated, Version 2) XX DE Tobacco vein distorting virus, complete genome. XX KW . XX OS Tobacco vein distorting virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5920 RX DOI; 10.1007/s11262-010-0524-1. RX PUBMED; 20740310. RA Mo X.H., Chen Z.B., Chen J.P.; RT "Complete nucleotide sequence and genome organization of a Chinese isolate RT of Tobacco vein distorting virus"; RL Virus Genes 41(3):425-431(2010). XX RN [2] RP 1-5920 RA Mo X., Chen Z., Chen J.; RT ; RL Submitted (29-MAR-2007) to the INSDC. RL Plant Protection, Yunnan Tobacco Science Research Institute, Nie'er Road, RL Yuxi, Yunnan 653100, China XX DR MD5; 14f7c2062ea5cfeceed3642bb7d23013. DR EuropePMC; PMC3728342; 23936244. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5920 FT /organism="Tobacco vein distorting virus" FT /host="tobacco" FT /isolate="Longlin" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:192203" FT gene 50..799 FT /gene="P0" FT CDS 50..799 FT /codon_start=1 FT /gene="P0" FT /product="putative P0 protein" FT /db_xref="GOA:B2BJG2" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:B2BJG2" FT /protein_id="ABV01910.1" FT /translation="MNFELINGSHLKVSTTRKLSYKERLLNLAIFLSQFVNKFEENATT FT NTFLRSLCALLPXLLSSRCPFFSGNAPHRNSKRERKRISRLAIYSGANITPCCGEATSS FT PTWLQTDNKLGAPRAHLKRCAGSALASYLQRFQTPLFQGAEQFSKFLRVWTRHCENVVA FT RSPPKLPLGRGLNLELEHLGHCLLDLLSGDDIYHARRMSRIALCLHNIYGEGVAVDVYR FT LAHLPRSAYPKSGEDYLHGSQIQKELQ" FT gene 174..2150 FT /gene="P1" FT CDS 174..2150 FT /codon_start=1 FT /gene="P1" FT /product="putative protein P1" FT /db_xref="GOA:B2BJG3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:B2BJG3" FT /protein_id="ABV01911.1" FT /translation="MQLXTLFFVLFALFSLSFSAADVPSFQGMPRTGTASGNESGFHGS FT LFIVEPISLPAVEKRPLPPPGSKPTINSEPHEPTLKDALVLLWQVTSRDSRRLYSRAQN FT SLVSSCASGLAIVKTWSQGALRSFLWAVVSIWSLSIWVIVSWIFYLVTTFTMPVVCLVL FT LYAFTTFMVKALQWMFTGWPTCLALLILRVGKTIFTVPRFKRNYSEEKQVKGFVSLKIP FT QSPPRGCVLLVQHEDGSHAGYASCVKLFDGTLALMTCHHVGTGVPKGKVASSKTTNKIP FT LSLFTPLISSEKGDFMLMSGPPNWESLLGCKGATFVPASQLAKSKMRFFFIEKNEWMAD FT HGEIVGXRDHWFATTLCNSEPGHSGTPIFNGKSIVGVHAGGENEQNFNVMSTIPPIPGL FT TTPQYVFETTAPQGRVFTDEDLGEXLQSVHSSVPQLHKFLSKTGKNWADYSBEEDFSVE FT VKNKPVQEPAAETTPPQLDTIEAPPVTESRQWYPRLPETGNEKGRAVCQNNSTPASAQN FT KGKEKEVVAEKAPANSTQPKLPESADGGKECLEKLLEKMVERIDLSAIEKKVVEVLAQK FT AMKKPRGSQXRKRPQKTSDDISKESTNGRYQPPHKRSPALKNAEASPSTTXQSKSKVVN FT GASNSSKSTRSWVKKSPASVGQQ" FT gene <1814..3442 FT /gene="P2" FT CDS <1814..3442 FT /codon_start=1 FT /product="putative protein P2" FT /note="putative P1-P2 fusion protein expressed by -1 FT ribosomal frameshifting as compared to other Poleroviruses; FT location of frameshift not determined" FT /db_xref="GOA:B2BJG4" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B2BJG4" FT /protein_id="ABV01912.1" FT /translation="MFREAFGENGGKNRPFCYRKESGGSISTESHEEASRIPXAQTTAE FT NFRRYFEGKYKWEVPASPQEIPGFEECGSLPQYYHPKQIKGSQWGIQLIQEHPELGEKV FT SGFGWPAVGPQAEVTSLTLQAERWLQRAQSAKIPSSEDRERVINKTVEAYSNVKTFGPT FT ATRGNKLEWRQFIEDFKSAVFSLELDAGIGVPYIAYGRPTHKGWVEDPKLLPVLARLTF FT NRLQKMLEVESSEMSAEELVQAGLCDPIRTFVKREPHKQSKLDEGRYRLIMSVSLVDQL FT VARVLFQNQNKREIALWRANPSKPGFGLSTDEQVLEFVQALAAQVEVPPEEVITSWEKY FT LVPTDCSGFDWSVAEWMLHDDMVVRNKLTLDLNPTTEKLRFAWLKCISNSVLCLSDGTL FT LXQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTNLEVYKSLGF FT KVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGSLEVISNYXAACASVLN FT ELRHDPDSVALLXXWLVHPVLPQND" FT gene 3644..5815 FT /gene="RT" FT CDS 3644..5815 FT /codon_start=1 FT /transl_except=(pos:4259..4261,aa:OTHER) FT /gene="RT" FT /product="readthrough protein" FT /db_xref="GOA:B2BJG5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B2BJG5" FT /protein_id="ABV01915.1" FT /translation="MNTGGARSNNGNGGSRVSRPRRRARSVRPVVVVAPPRGARXRTRR FT RRNGGRNRRGRNGVGGRSSNSETFIFNKDSIKDSSSGSITFGPSLSESVALSGGVLKAY FT HEYKITMVNIRFISESSSTAEGSIAYELDPHCKLSSLQSTLRKFPVTKGGQATFRAAQI FT NGVEWHDTTEDQFRLLYKGNGTKGVAAGFFQIRYTVQLHNPKXVDAEPGPSPGPQPQPT FT PSPSPQKHERFIAYVGIPMLTIQARENDDQILLRSMGLQRMKYIEDENQNYTNIDSQFY FT SQSNVNAVPMYYFNVPKGTWSVDISCEGYQPTSSTTDPNRGRSDGLIAYSNSDSDYWNV FT GEADGVKISNLRNDNTYRXGHPDLEINSCHFRDGQLLERDATISFHVEAPDDGRFFLIG FT PAIQKTAKYNYTISYGEWTDRDMELGLITVVLDEHLEGSGSGNLARRERRSLHQHCKSL FT YAPEGPPENKPWDDNQIIVGERQLRKTLSMDMSEAGSDLREGKLESNPSGDARDELNYT FT LNLSDSEDELIDEPNFVPGMRMNLEAVPLANPADKDYILRDRGITTTLXEPAYMQGVAP FT QDKIEEDPXKHVRDFKSAHASKGPASVASGSTMRGNLRGGTLRGRSMPPPLPPPAEKVG FT DSLPSGKLQWDPPGSPLTPFKDKELAKPPSDARSSISGRLTGGLLKSRVDKDLASLTTA FT QRQQYEITRQTLGKIAAKEFLQRCKEGGS" FT gene 3644..4261 FT /gene="CP" FT CDS 3644..4261 FT /codon_start=1 FT /gene="CP" FT /product="CP protein" FT /db_xref="GOA:B2BJG6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B2BJG6" FT /protein_id="ABV01913.1" FT /translation="MNTGGARSNNGNGGSRVSRPRRRARSVRPVVVVAPPRGARXRTRR FT RRNGGRNRRGRNGVGGRSSNSETFIFNKDSIKDSSSGSITFGPSLSESVALSGGVLKAY FT HEYKITMVNIRFISESSSTAEGSIAYELDPHCKLSSLQSTLRKFPVTKGGQATFRAAQI FT NGVEWHDTTEDQFRLLYKGNGTKGVAAGFFQIRYTVQLHNPK" FT gene 3672..4142 FT /gene="MP" FT CDS 3672..4142 FT /codon_start=1 FT /gene="MP" FT /product="putative MP protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B2BJG7" FT /protein_id="ABV01914.1" FT /translation="MEMVDHESLALADAHDRFGRSLWSHPLGEHGEELEEDEMEAGTEE FT AVMELEEGQATARLSSSTRTQSRIVPQAQSLSGRLYQRASRFQVEFSKPTMNIRSQWST FT YASSVNPLPQRRAPSLTSWTPTASFLXSNQPSVNSPSPKAGKQRSGLRKLMG" XX SQ Sequence 5920 BP; 1639 A; 1453 C; 1429 G; 1356 T; 43 other; acaaaatata agaagggaga gacccttgct cgagttttct tcraagctta tgaactttga 60 attratcaac ggaagccayt tgaaagtttc cacaactcgc aagctatctt acaaagagag 120 acttttgaac ttagctattt tcctgagtca atttgtcaat aaattcgagg aaaatgcaac 180 tacraacact tttcttcgtt ctctttgcgc tcttctccct ytccttctca gcagcagatg 240 tcccttcttt tcagggaatg ccccgcaccg gaacagcaag cgggaacgaa agcggatttc 300 acggctcgct atttatagtg gagccaatat cactccctgc tgtggagaag cgacctcttc 360 ccccacctgg ctccaaaccg acaataaact cggagcccca cgagcccacc ttaaaagatg 420 cgctggttct gctttggcaa gttacctcca gagattccag acgcctctat tccagggcgc 480 agaacagttt agtaagttct tgcgcgtctg gactcgccat tgtgaaaacg tggtcgcaag 540 gagccctccg aagcttcctt tgggccgtgg tctcaatttg gagcttgagc atttgggtca 600 ttgtctcctg gatcttctat ctggtgacga catttaccat gcccgtcgta tgtctcgtat 660 tgctttatgc cttcacaaca tttatggtga aggcgttgca gtggatgttt accggctggc 720 ccacttgcct cgctctgctt atcctaagag tggggaagac tatcttcacg gttcccagat 780 tcaaaaggaa ctacagtgaa gagaaacagg ttaagggatt tgtctccttg aaaatccccc 840 aaagcccccc ccgtggttgt gtgctactcg tgcaacatga agatggatct catgccgggt 900 acgccagttg cgtcaagtta ttcgacggca ctttagccct catgacttgc caccacgtgg 960 gcacaggggt tcctaaagga aaggtggctt cctcaaagac cactaacaaa ataccactca 1020 gcctattcac acctctgatc tcttccgaaa aaggagattt catgttaatg agcggaccac 1080 caaactggga gagtctgctc ggctgtaaag gagctacctt tgttcccgca tcacaacttg 1140 ctaaatccaa gatgcggttc tttttcattg agaagaacga atggatggct gatcacggag 1200 agatcgtagg tycccgcgat cactggtttg ctaccacact ctgcaactca gagcctggac 1260 actccggcac ccctatcttc aatggtaaat ccatagtggg tgtgcatgca ggaggagaaa 1320 atgagcagaa cttcaatgta atgtcaacga tccctcccat ccccggtttg acgaccccgc 1380 agtatgtctt tgaaactact gctcctcaag gtcgggtctt tactgatgag gacctgggtg 1440 agrtgcttca aagcgttcac tcatccgtac cccagctgca taaatttttg agcaagactg 1500 ggaagaactg ggcggattat tctratgaag aagatttcag tgtagaggtt aaaaacaaac 1560 cagtccagga gcccgcggca gaaacaacgc cgcctcaact tgacactata gaggctccgc 1620 cggtgactga atcccggcag tggtaccctc gtcttcctga gacgggaaac gagaagggca 1680 gagctgtctg ccaaaacaac agcaccccag cctcagcaca aaacaagggc aaggaaaaag 1740 aggtrgtggc cgaaaaggcc cccgcaaact ccacccagcc gaagcttcca gaatcagccg 1800 acggcggcaa agaatgttta gagaagcttt tggagaaaat ggtggaaaga atcgaccttt 1860 ctgctataga aaagaaagtg gtggaagtat tagcacagaa agccatgaag aagcctcgag 1920 gatcccagyg gcgcaaacga ccgcagaaaa cttccgacga tatttcgaag gaaagtacaa 1980 atgggaggta ccagcctccc cacaagagat ccccggcttt gaagaatgcg gaagcctccc 2040 ccagtactac cayccaaagc aaatcaaagg tagtcaatgg ggcatccaac tcatccaaga 2100 gcacccggag ctgggtgaaa aagtctccgg cttcggttgg ccagcagtag gcccccaagc 2160 tgaggtgacc tctctcactt tgcaagcaga gaggtggctg caacgcgcgc agtcagctaa 2220 aatcccgtca tctgaggacc gggagcgcgt aattaataaa acagtggagg cctactcaaa 2280 tgtgaaaact tttggcccca ctgctactag agggaacaag ctcgagtggc ggcaattcat 2340 tgaagatttt aagtcagccg tcttctctct ggagcttgat gcaggtatag gtgtaccata 2400 tatcgcctat ggaaggccca ctcataaagg ttgggtggaa gacccgaaac tcctgccggt 2460 gcttgcccga ctcactttca accgactaca gaagatgttg gaagttgagt cttctgaaat 2520 gagtgctgaa gagcttgttc aagctggtct ctgtgatccc ataaggacat ttgtaaagag 2580 agaaccgcac aagcaatcta aactcgatga aggccgctac cgcctcatca tgagtgtttc 2640 cctagtagat caactggtag cccgggttct gttccaaaat cagaacaagc gagaaatcgc 2700 tctttggagg gcaaacccct caaaacccgg ttttggcttg tctacggatg agcaagtgct 2760 ggagttcgta caagctctgg ccgcgcaagt ggaagtccca cctgaggaag tgattacctc 2820 ctgggagaag taccttgtgc cgactgactg ctctggtttc gactggagcg ttgcggaatg 2880 gatgctacac gacgatatgg tcgtccgcaa caaactcaca ttggacctga atccgacaac 2940 ggaaaagctg cgctttgcgt ggctaaaatg cattagtaac agtgtccttt gtttgagcga 3000 tggcaccctg ctagyccaaa gagtccccgg tgttcagaaa tctgggagtt acaacacaag 3060 tagctctaac tccagaatcc gggttatggc cgcttatcat tgcggagcyg actgggcyat 3120 ggccatgggg gatgaygctc tcgagtcagt caacaccaac ctagaggtgt ataaaagtct 3180 aggtttcaaa gtcgaggttt caggacaact ggaattctgc tctcatattt ttagagcgcc 3240 tgacctcgcc ctcccagtga atgagcgyaa aatgctgtac aagctcatct tcggttacaa 3300 tcctgggagc gggagtctgg aggtgatctc caactatrty gccgcctgtg catccgtgtt 3360 aaacgagttg cggcaygacc cagactcagt wgctctkctc aycymgtggy trgtccatcc 3420 agtgctgcca caaaacgatt aaaggagaga gcawacataa actagccaag catacrtcag 3480 ttgcragcgt tggaagttca agtctgatta ccaaagcccg acaccataga ttttaaattt 3540 ttagcaggat ttgcgtcagg atttctatcc gcaatcccaa tttcagttgc gggcatttac 3600 ttagtctacc tcaaaatctc agcccacgtt agagctattg ttaatgaata cgggaggagc 3660 caggagtaat aatggaaatg gtggatcacg agtctctcgc cctcgcagac gcgcacgatc 3720 ggttcggccg gtcgttgtgg tcgcaccccc tcggggagca cggygaagaa ctcgaagaag 3780 acgaaatgga ggcaggaaca gaagaggccg taatggagtt ggaggaaggt caagcaacag 3840 cgagactttc atcttcaaca aggactcaat caaggatagt tcctcaggct caatcacttt 3900 cgggccgtct ctatcagaga gcgtcgcgct ttcaggtgga gttctcaaag cctaccatga 3960 atataagatc acaatggtca acatacgctt catcagtgaa tcctcttcca cagcggaggg 4020 ctccatcgct tacgagctgg acccccactg caagctttct agyctccaat caaccctccg 4080 taaattcccc gtcaccaaag gcgggcaagc aacgttcagg gctgcgcaaa ttaatggggt 4140 agagtggcat gatacaaccg aagatcaatt taggctgctc tataaaggca acggaacaaa 4200 aggtgttgcc gcygggttct ttcaaatccg gtayaccgtg caactgcaca accccaaata 4260 ggtagacgcc gagccaggac ctagcccagg acctcaacct caacccacac cctcaccttc 4320 tcctcaraag catgagcgct tcattgcata cgtcggcatt ccaatgttga caattcaagc 4380 gcgggagaac gacgaccaga tcttattaag atccatgggt ttgcaacgga tgaagtatat 4440 agaggacgag aatcaaaact ayacgaayat ygattcgcag ttttattctc agtcyaatgt 4500 caatgccgty cccatgtatt atttcaacgt gccaaaaggt acatggtcag tcgatatcag 4560 ctgtgaaggt tatcagccaa caagcagcac cacagaycca aaccgtggga ggagtgatgg 4620 gttaatagct tattccaata gtgattcaga ttactggaac gtaggagaag cggatggtgt 4680 taaaatttcg aatttgagga atgataacac gtaccgccwa ggacatccag atcttgagat 4740 caattcctgt cattttagag acgggcaact gttagaacgt gatgcaacta taagtttcca 4800 cgtcgaagcc ccagatgatg ggcgtttctt tctgatagga cccgcgattc agaaaaccgc 4860 caagtacaat tatacaatat cttatggcga gtggacagac agagatatgg aattagggct 4920 aatcacagta gtgctagatg agcaccttga gggttctggc tcgggcaatt tggcgaggag 4980 agaaaggaga tcattgcatc aacattgcaa atctctctac gccccggaag gaccaccgga 5040 aaacaaaccc tgggatgaca accagatcat tgttggagaa agacaactcc gtaaaactct 5100 gtctatggac atgtcagaag ctggttctga cctaagagaa ggaaaactcg aatcaaaccc 5160 tagtggtgat gccagggatg agttgaatta cacgttgaat cttagtgatt ccgaagatga 5220 gctcattgac gagccaaact tcgttcctgg aatgcggatg aatttagagg cagtacctct 5280 agctaatccc gctgataaag actacatact tcgcgacaga ggcataacaa cgactttggy 5340 tgaaccagcc tacatgcaag gtgtagctcc tcaggacaaa attgaggagg atccctrgaa 5400 acatgtccgg gatttcaaat ctgctcacgc tagtaaaggc ccagcttctg tagcttctgg 5460 gtctacaatg agaggtaact taagaggagg tactctaaga ggaagatcta tgcccccacc 5520 tctcccccct ccagctgaga aagttgggga ctccctgcct tcaggcaaac ttcaatggga 5580 tcccccaggc tcgcccctta ctccttttaa ggataaggaa ctggctaaac cgccttctga 5640 tgctcgtagc tcgatttctg gtcgtctgac tggaggtctt ctgaaaagcc gagtagataa 5700 agatttggcg agcctgacca cagctcaaag acagcagtac gaaataacta gacaaactct 5760 tggtaagatt gctgctaaag agtttctaca aagatgtaag gagggtggtt catagtctaa 5820 gctctacgac tataaaataa cgagcacact gaactccaag cctgttagag tataacccag 5880 gcagtctgaa ctctaagact ttaaaactgt gagtaatcct 5920 //