ID EF521850; SV 1; linear; genomic RNA; STD; VRL; 5706 BP. XX AC EF521850; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 064, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5706 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5706 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; d7864ab3a926f4e4efd20ca249150a74. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5706 FT /organism="Barley yellow dwarf virus PAV" FT /host="oat" FT /isolate="064" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="USA:Alaska" FT /db_xref="taxon:2169986" FT primer_bind 1..28 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(152..1171,1171..2757) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A332" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A332" FT /protein_id="ABP68810.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEARDEAKDNIKAASKIGMEFSAPTNIQDLYTFTKVEKVETGLMKEVTK FT MVQGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDAQGF FT LEGLCASSGFESPFSLLGLPEIKVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNA FT LVAVERRVFTVGKGDKAIYPPHPEHDIFTETMDYFAESIIDKVGYCKTYPAQELALSYS FT AGKRSQYFKAIESLKKEPYQQKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSMFGSPTVLSGYDNFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDTELATALEHQLVNNIKMFVEDKMLSFQVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITERANEKLFDGMYDHFLKYGFNMVTE FT APVYELGELEFCQSKPVRIDGKYRMVRRPDCIGKDSCTLLSMLNEADVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITSDNR FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 152..1174 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A333" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A333" FT /protein_id="ABP68809.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEARDEAKDNIKAASKIGMEFSAPTNIQDLYTFTKVEKVETGLMKEVTK FT MVQGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDAQGF FT " FT CDS 2871..4823 FT /codon_start=1 FT /transl_except=(pos:3471..3473,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A334" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A334" FT /protein_id="ABP68813.1" FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRTGPRRRNGRR FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF FT QESTIDQFWLLYKANGTTTDTAGQFIIRINVSMLTPKXVDSSTPEPKPAPEPTPAPQPT FT PAPQPTPEPTPTPVPKRFFEYVGTPTGVISTRENSDSISVSKLGGQSMQYIENEKCESK FT VIDSFWSTNNNVSAQAAFVFPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGIGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDGVISFHVDATGT FT DACFYLAAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTFDESDVEAERIARHSETPAR FT LNHILVSEAYEEPLPTIIDQGLCDVKTPEQETLEVDEDDKQTVSTEPDIALQEYEAATA FT EIPDAEEDVLPSKEQLSVKPVDSSGTLLPKPKEPEVLGTYQGMNIYPEDVPPVARQKLR FT EAAKAPSTMLYDRAPRGTKSILSRFIEGNKSKGTSAAPSVSTYSNMTREQLREYTRIRN FT SLGITAAKEYKASLQ" FT CDS 2871..3473 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:A5A335" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A335" FT /protein_id="ABP68811.1" FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRTGPRRRNGRR FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF FT QESTIDQFWLLYKANGTTTDTAGQFIIRINVSMLTPK" FT CDS 2914..3375 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A5A336" FT /protein_id="ABP68812.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAQEEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSVPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPPL FT RRALSLLNSTPRASNQPWVATLIPSPSAKLPPSPSEPRRLMGRNSKNQR" FT CDS 4953..5072 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A337" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A337" FT /protein_id="ABP68814.1" FT /translation="MDDLHVIAVCMLAMTTFTAVGVVPGCCIGCIEALCGSKR" FT primer_bind complement(5683..5706) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5706 BP; 1671 A; 1395 C; 1358 G; 1282 T; 0 other; tgaaggttga ccacctacac aaaaagactt tgtgcttgaa gtctacaact cacctgtttt 60 gtattcagga agttgtctgc aacaacggtc aacagtacgt ttgacaccgt actgccccct 120 tccccatccc ttcccccgcc cctctgccaa catgcttctt tttgaacttt tgatcggcgc 180 tagcgtcaaa gctgttaaag acttcatcag ccactgctac tctagactaa aaagcatata 240 ttatgctttc aaaagatggc tgatggagat ctctgggcaa tttaaggccc acgacgcttt 300 tgtcaacatg tgcttcgggc acattgctga catcgaagac ttcgaggcgg aactcgctga 360 agagttcgcc ttgaaggagg atgagatcga ggaggcgaga agcctcatgc gtctgctcac 420 cgcccaaaaa gcaaaaactg gggtggtaga ggcttggacc gacttctttg tgaagtcgag 480 aggcggggtt tatgccccgc tttcctgcga gccttccaaa gcagagcttg aggccaaagc 540 cgacaagctc gaaagactac ttgaggacat gcacaaattt gaggtgcaag cggcaaaaaa 600 atacataaaa gaaaagggcc gcgggttcat caactgctgg aacgaccttc gttccagact 660 caagttagtc aaggaggcaa gagacgaggc caaagacaac atcaaggccg cctccaagat 720 cggcatggaa ttctccgcac caaccaacat ccaggacctc tacaccttca ccaaggttga 780 aaaggtcgag accggcctca tgaaggaggt caccaaaatg gtgcagggag aagaaaccaa 840 gcacatggag ccaataactg aagacatgcg ctccatcaag gacaccgcgg aagaccgaga 900 ggccgcctcc aagtggataa cggaggtggt taaattgaaa aattcaaccc tgtctgccga 960 cgagctgtcc ctggccacca tcgcccgata tgtggaaaat atcggggaaa aatacaagct 1020 cgacattgct tccaaaacgt accttaagca atgcgcgatg atgtctgtcc caatcccaac 1080 acaaaaagac atcaagatga agatggtgat ccagagccct gcggcacgag ctgcgcgtga 1140 gcgcgtagct gtgcttgatg ctcagggttt ttagaggggc tctgtgcctc ctccggtttt 1200 gaaagtccct tttctctact tggactgccg gagattaagg tcacagacgg agcccgacta 1260 cgtaaggtta gtagtaatat tagataccta tcccagaccc acctcggctt ggtatataaa 1320 gccccaaatg cctccctgca caacgccctg gttgcagtgg agagaagagt gtttacagta 1380 ggaaaggggg acaaagctat ataccccccc cacccagagc atgacatttt cactgagact 1440 atggactact tcgcagagtc cataattgac aaggtgggat actgtaaaac ataccctgca 1500 caagaattag ctcttagtta tagtgcaggg aagcggtcac aatacttcaa agccatagag 1560 tccctcaaga aggaacctta tcaacaaaag gactctaatg tgcaggcatt cctcaagaag 1620 gagaagcatt ggatgaccaa agccatcgcc ccgcgcctga tctgcccccg ctctaagcgg 1680 tacaatatca tccttggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgctatc 1740 gatagtatgt ttggatcccc cactgtgctt tctggctatg acaacttcac tcaaggaaga 1800 atcatagcca gcaagtggca aaagtttgca tcacccgttg ctatcggtgt tgatgctagc 1860 cgcttcgacc aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc 1920 atatttggcg acactgaatt ggccactgct ctcgaacacc aacttgtaaa taatatcaaa 1980 atgttcgttg aggataagat gctttcattt caagtgagag gccacagaat gtccggggac 2040 ataaatacca gcatgggaaa caaactgata atgtgtggca tgatgcacgc atacttcaaa 2100 atgctgggtg ttgaagctga actgtgcaac aatggggacg actgtgtcat catcactgag 2160 agagccaatg aaaagctctt tgatggcatg tacgaccact tcctaaagta cggcttcaac 2220 atggtgacgg aagccccagt ttacgaactc ggggagcttg aattttgtca atcaaaaccc 2280 gtcagaatag atggcaaata caggatggtg aggagaccag actgtattgg gaaagatagt 2340 tgcacacttc tgagcatgtt gaatgaagct gacgttaaga gttacatgtc agctgtggct 2400 cagtgtgggc tcgttttgaa tgcgggtgta cccatcctgg aaagcttcta ccgctgtttg 2460 tacagaagct ctgggtacaa gaaagtaagt gaggaataca tcaaaaacgt catatcatat 2520 ggaacagatg aacgccttca aggtagacgt accttcaagg agacacctat cacaagcgac 2580 aatcgaatgt cgtactggga atcattcgga gttgacccta agatacaaca actcgtcgag 2640 cggtacttcg acgatcttac ggtaagtgct caactccaga gtgtgaaggt gacatctcca 2700 catctgcaat caatcctcct ctccattccg gagaacaact cgcacaacga atattgatta 2760 ccaaatcttg gcagggtttg gaatagggtt catagtaggt atcccctgta cattagctct 2820 cacgtatttt atttacaata aagtttcaga cactactaga gaggtagtga atgaattcag 2880 taggccgtag aggacctaga cgagcaaatc aaaatggccc aagaaggcgg agccgtagaa 2940 caattcggcc agtggttgtg gtccaaccca atcgaacagg acccagacga cgaaatggtc 3000 gacgctcagg aagaagaggg ccaaattcta tacctggatc aacaggcagg actgaggtat 3060 tcatattctc agtcgacaac cttaaagcca actcttccgg gacaatcaaa ttcggtccca 3120 gtttatcgca atgcccagcg ctttcagacg gaatacttaa gtcctaccac cgttacaaga 3180 tcacaagtat ccgtgttgag tttaagtcac acgcgtccgc cactacgtcg ggcgctatct 3240 ttgttgaact cgacaccgcg tgcaagcaat cagccctggg tagctacatt aattccttca 3300 ccatcagcaa aactgcctcc aagtccttca gagccgaggc gattaatggg aaggaattcc 3360 aagaatcaac gatagaccaa ttctggctac tctacaaggc aaatgggacc actactgaca 3420 ccgctggaca gtttatcata aggataaacg tcagtatgtt aactcccaaa taggtagact 3480 cctcaacacc ggaaccgaaa ccagcaccag aaccaacacc agccccacag cccactccag 3540 ccccgcagcc cacaccagaa ccaactccta cacctgtccc caagagattc tttgaatacg 3600 tcggaacccc aaccggcgtg atttcaacgc gcgaaaactc tgacagcatt tctgtcagca 3660 agcttggtgg acaatccatg cagtatattg agaatgagaa atgtgaatca aaggttattg 3720 attccttctg gagcaccaac aacaacgttt ccgctcaggc ggcattcgtt tttccagtgc 3780 cagaagggtc atacagtgtc aacatttcgt gtgaaggctt tcaatccgtt gaccacatcg 3840 gtggtaacga ggatggctac tggattgggc tcatcgctta ctccaattca tcaggagaca 3900 actggggaat cggtaattac aaagggtgca gtttcaaaaa tttcttggca accaacactt 3960 ggagacctgg ccacaaagat cttaagttga atgattgcca gttcacagat ggacaaatag 4020 ttgaaaggga tggcgtgata tctttccatg tagatgcaac aggtactgat gcctgtttct 4080 accttgcagc ccccaaaaca atgaaaactg acaaatacaa ctatgttgtt tcgtatgggg 4140 ggtacacgaa caaacggatg gagttcggta ccatatctgt gacatttgat gaatccgatg 4200 ttgaggcaga acgcattgcc aggcattcag agaccccggc tcgtctaaac catattttag 4260 tatctgaggc atacgaagag ccgttgccca ccataatcga tcaaggcttg tgtgacgtga 4320 aaactcccga gcaagaaact ttagaggtgg atgaagatga caaacagact gtttcaactg 4380 aacctgatat agcattacaa gaatatgagg ctgctacagc cgaaatacct gatgctgaag 4440 aggatgtttt accctctaag gaacaactgt ctgtcaaacc tgtggactca tccggaacac 4500 tacttccaaa acccaaggaa cctgaagtac ttggaacata tcagggtatg aatatatacc 4560 cagaggatgt accaccggtg gctcgtcaaa agctgcgtga agcagcaaaa gcaccttcta 4620 ccatgctgta cgatcgggcc ccaagaggga caaaatccat cctgtcccgg tttatagaag 4680 gcaataagtc taagggcacc tctgctgctc cctccgtgtc aacctattct aatatgacaa 4740 gggaacagtt gcgggagtac acccgcatta gaaatagttt aggtatcact gcagcaaaag 4800 aatacaaagc gtctctacag tgaagattaa caccactaac acaagccgaa tcctgggaaa 4860 caggcagaac ttaggttcgt aagctcgggt aactggaagg tgggctgtca acccaccacc 4920 atcttaccgc cgcattgcct tgtgtttggc cgatggatga tctccatgtc attgctgttt 4980 gtatgcttgc catgactact ttcacagcag tgggagttgt gcctggttgc tgcattggtt 5040 gtattgaagc cctttgtggc agtaaacgct aaatatgtgt ctcggtctgt gcgagatgca 5100 actcaaaaac aagtagggag cgatagctca gtgagaggat taacaaccct cggtaaaagc 5160 tggttctgga ggacatgaat aaccctctat agaacaaagt ggaggtccac cactgatcaa 5220 atgagacagc atgcttctgt gctatacact gccccagcgc aatctgggta aacaaataaa 5280 cactgtccaa cccaatgaaa cgagggtgga gacagcggag tgggtgactt cgagatgtac 5340 acccgaacgt caggtttgaa gacgttataa aacactcgag atgagaaaca ctcgttaaaa 5400 gttccccggc tgatacaccc agtcggcccg acccgcaggc ataccctcga tacgaaacga 5460 gggttcctag gagccaccac ctgtgatgca aggtggggta ggagtcttag caagctctgt 5520 acctgggaat ggacaaccat agcaatccta cggcatccgg ggcgcgagct ttccgcacta 5580 ggtgaaagcg tgccactggc ctgttgcaag caatctagct ctgcttgcaa cagtatccct 5640 tagaagcaat tctttggggg gactggatcc tgactgctgg cactcgaaag agcagttcgg 5700 caaccc 5706 //