ID EF521848; SV 1; linear; genomic RNA; STD; VRL; 5723 BP. XX AC EF521848; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Cereal yellow dwarf virus - RPV isolate 092, complete genome. XX KW . XX OS Cereal yellow dwarf virus RPV OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5723 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5723 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 3fbc4f1e28516ccd1e4c7734ad0f0e3c. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5723 FT /organism="Cereal yellow dwarf virus RPV" FT /host="barley" FT /isolate="092" FT /serotype="RPV" FT /mol_type="genomic RNA" FT /country="USA:Iowa" FT /collected_by="W.A. Miller" FT /db_xref="taxon:2170100" FT primer_bind 1..25 FT /note="derived from viral specific primer used for RT-PCR" FT CDS 173..943 FT /codon_start=1 FT /product="P0" FT /note="ORF0; putative suppressor of gene silencing" FT /db_xref="GOA:A5A320" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:A5A320" FT /protein_id="ABP68797.1" FT /translation="MFIAQPCGRVLVFDVASRTPSFFTRYSVELSLRVLDPFFTRAVTD FT FRYTQNEIDLFCVSLGFLLPILLTGESYSWRGHLVLPLSYTELLVRWGLAVGYFPTFSA FT DGDIRQNPELRIDLSTMSTRSFYEQFLLRYNTSGLAKAIIGQQECFQSGMESFKRFLHY FT RLTCFESCLPRPRWESPLAPGPYLDRAFKATLLGRMVGHNQLLFTGLSSDITRYYNELV FT VEGVPVAFWDAAGITLHHAGEEYFSNSYIQKILQ" FT CDS join(324..1700,1700..3559) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A321" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:A5A321" FT /protein_id="ABP68798.1" FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTSSSPFLTPNYLFDGGSQ FT WGTSLPSPLMVTFDRTQNSASTCPPCQPALSTSSSYSDITRVGWQKLSLDSKSAFKAAW FT SLLKDSYTTASRALKAAFHDLVGKVLWLLVLIWTGLLRQLFSAVWSVITNYSLPVCLLI FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPNTP FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFYSSRTSGSIPITEFR FT VIFESKIMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFTNKGRGAFKSKSGINWEDIEDESG FT NREGGSVRRNKRSSGKQGYRHPRRRQVPKEDCCSFFAEGTAAPRCIPTHQHNWEQNSYM FT SNCYCNIPGHGCAYWTIAARNHEQHNESAGPEDRYVEDREIDSGPSREPGSEETTRQAW FT LKETARSWQKFFADIYTWDVSTSKQEVPGFEQVGKFSPQYYPRPRGESEWGRKLCAEHP FT LLGEKTAGFGWPQVGASAELTSLRLQAARWLERSESAKIPSDAARENVINRTVQAYSNC FT KTNTPRCTRGELSWETFKIDFLEAIKSLQLDAGVGLPMITAGLPTHRGWVEDPDRLPVL FT AQLTFDRLLTMSKASLEARSPEQLVKENLCDPIRLFVKQEPHKQSKLDEGRYRLIMSVS FT LIDQLVARVLFQRQNKSEIALWSAIPSKPGFGLSTEDQVSKFMDVLAGNVGASPEEVCD FT NWRDLLVPTDCSGFDWSVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCL FT SDGTMLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKY FT KDLGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAA FT VSVLHELRHDRELCLKLQEWLISDVTTKLN" FT CDS 324..2288 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A322" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:A5A322" FT /protein_id="ABP68799.1" FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTSSSPFLTPNYLFDGGSQ FT WGTSLPSPLMVTFDRTQNSASTCPPCQPALSTSSSYSDITRVGWQKLSLDSKSAFKAAW FT SLLKDSYTTASRALKAAFHDLVGKVLWLLVLIWTGLLRQLFSAVWSVITNYSLPVCLLI FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPNTP FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFYSSRTSGSIPITEFR FT VIFESKIMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFTNKGRGAFKSKSGINWEDIEDESG FT NGKAAASAVTNAAAANKAIVTPGVAKSQKKTAVPSSPKAPQPPAASQPTSTTGSRTPIC FT PIATATSPDTAVPTGPSQQEIMNNIMNLLVQRIDMSKIEKSIVDQVASQALKKPRGKRG FT SKKRPAAGKSSSPTSTPGTYQHPSKKSQASNRLGNSPPSTTRAPAANQNGGENSVPNTL FT SWVRKLPVSDGPKLGHPLN" FT CDS 3745..5556 FT /codon_start=1 FT /transl_except=(pos:4357..4359,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A323" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:A5A323" FT /protein_id="ABP68800.1" FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPKXVDAEPGPSPGPSPDPPP FT PPSPSPEPAPVKEERFIVYSGVAHTIISAQSTDDSIIVRDIPDQRFRYVENENFYWFQI FT AAQWYSNTNTKAVPMFVFPVPIGEWSVEISTEGYQATSSTTDPNKGRIDGLIAYDNSSE FT GWNIGAGSNVTITNNKADNSWKYGHPDLEINSCHFNQNQVLEKDGIISFHVKATEKEAN FT FFLVAPPVQKTSKYNYAVSYGAWTDRDMEFGLITVTLDEKRGSGSPTRKSLRAGHAGVT FT TTTDLVALPEKENSGIETSETPSAPVTSSKAPLPTVSDSESEDDPLSAAPDVGFGGTRL FT LIDTDIKTIPDPDVADAFVNSAHVGEDPWAEVRAFKSAQRPPRGPSSVASGSLSGGSLR FT GNLRPKTEDPKDSSKSKSRKWSFGSPR" FT CDS 3745..4359 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:A5A2R6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2R6" FT /protein_id="ABP68801.1" FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK" FT CDS 3770..4231 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A1YH39" FT /protein_id="ABP68802.1" FT /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG FT EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV FT SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR" FT primer_bind complement(5701..5723) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5723 BP; 1471 A; 1515 C; 1351 G; 1386 T; 0 other; acaaagatta ccgaggggtg tcttcaacag ttcagacgct caggccttca acgctttcag 60 ccttcaaagc ttaagctcac tgttcccgcg ctgtttcgac gcttccagct cacagcccgt 120 aaaaccctct cctcccgctc tagcgatcaa cttgcgtgtt cgttattaac gcatgttcat 180 cgcccaacct tgcgggcgag ttcttgtgtt cgacgtcgcc tcccgcacgc catcgttctt 240 cactcgttac agtgttgaac tctcgctccg tgttctagat ccattcttca cgcgagcagt 300 aacagatttc cgatacaccc aaaatgaaat cgatttattt tgtgtgtctc ttggctttct 360 gttgccaatt ctcctcacag gagaatctta ctcttggcgc ggtcacctcg tcctccccct 420 ttcttacacc gaactacttg ttcgatgggg gctcgcagtg gggtacttcc ctaccttctc 480 cgctgatggt gacattcgac agaacccaga actccgcatc gacctgtcca ccatgtcaac 540 ccgctctttc tacgagcagt tcctactcag atataacacg agtgggttgg caaaagctat 600 cattggacag caagagtgct ttcaaagcgg catggagtct tttaaaagat tcctacacta 660 ccgcctcacg tgctttgaaa gctgccttcc acgacctcgt tgggaaagtc ctttggctcc 720 tggtccttat ctggacaggg cttttaaggc aactcttctc ggccgtatgg tcggtcataa 780 ccaactactc tttaccggtt tgtcttctga tatcactagg tattataacg agttggttgt 840 ggaaggcgtg ccggtggctt tttgggacgc tgccggcatt actttgcatc acgctggtga 900 agaatatttt tcgaattctt acattcaaaa gattcttcaa tgagaaaact gtctcaggtt 960 atgacagtta ttcgatcccc aacacccctc cgaagcggag cgtcatcatg atgcgacgcc 1020 aaaacaagga gcacattgga tatgcgaact gtattcgtct tttcgacgga cggaacgcaa 1080 ttgtcacagt tgctcacaat atagaggagg gttgctcttt ctattcctca cggactagtg 1140 gttccatccc aatcaccgaa tttcgcgtta tctttgaaag caaaatcatg gatatcgcca 1200 ttctagtggg acccatcaat tgggaatcga ttctcggatg caaaggagtc cacttcacca 1260 ccgctgaccg cttagcagaa tgcccagcgg ctctttatct tcttgatagc gatggtcagt 1320 ggcgctcaaa ctcggcgaag atttgtggtc atttcgacaa cttcgcccag gtcttgtcca 1380 acactaaagt cggtcactcc ggtgccggtt atttctatgg caagactctc gttggcctac 1440 ataaaggcca tcctggcaaa gatttcaatt ttaatctgat ggctcctttg ccaggaatac 1500 ccggcttgac ctccccgcag tacgtcgtgg aatccgaccc cccccaggga ttggttttcc 1560 ccgaagaagt cactgaatca atcgaaaccg cgattaagga ggcaacaatg tacaagaatg 1620 tcttcaccaa taaaggacgt ggcgccttta aatctaaaag cggcatcaac tgggaagaca 1680 tcgaagacga gtcgggaaac gggaaggcgg cagcgtccgc cgtaacaaac gcagcagcgg 1740 caaacaaggc tatcgtcacc cccggcgtcg ccaagtccca aaagaagact gctgttcctt 1800 cttcgccgaa ggcaccgcag ccccccgctg catcccaacc caccagcaca actgggagca 1860 gaactcctat atgtccaatt gctactgcaa catccccgga cacggctgtg cctactggac 1920 catcgcagca agaaatcatg aacaacataa tgaatctgct ggtccagagg atcgatatgt 1980 cgaagatcga gaaatcgata gtggaccaag tcgcgagcca ggctctgaag aaaccacgcg 2040 gcaagcgtgg ctcaaagaaa cggcccgcag ctggcaaaag ttcttcgccg acatctacac 2100 ctgggacgta tcaacatcca agcaagaagt cccaggcttc gaacaggttg ggaaattctc 2160 cccccagtac tacccgcgcc cccgcggcga atcagaatgg gggagaaaac tctgtgccga 2220 acaccctctc ttgggtgaga aaactgccgg tttcggatgg ccccaagttg gggcatccgc 2280 tgaattgaca tctcttcggc tgcaagcagc tcgctggctc gaacgttccg agtcagctaa 2340 aattccatca gatgctgcta gagagaacgt gatcaatcgc accgtacagg cgtactcgaa 2400 ctgcaaaacc aatacgccga ggtgcacacg aggtgagtta agttgggaaa cgttcaaaat 2460 tgacttcctt gaagccatca aatcgctcca acttgacgct ggcgtcggat taccgatgat 2520 cactgcgggg ctccccaccc atcgtgggtg ggttgaagac ccagatcgtt tgccagtttt 2580 agctcagctt acctttgacc gcctacttac gatgtcaaag gcaagcttgg aagctcgctc 2640 cccggagcaa ctcgtgaagg agaatctctg tgatcctatt cgtctctttg taaaacaaga 2700 gccacataaa cagagtaagc ttgatgaggg acgttaccgc ctcatcatgt cagtctcctt 2760 gattgatcaa ttggtagccc gggttttgtt tcaaagacaa aacaaatccg aaatcgcgtt 2820 gtggagcgcg attccgtcaa aacccggttt tggattatcc accgaggacc aagtttcaaa 2880 attcatggat gtcctcgccg ggaacgttgg tgcgtctccc gaagaggtct gcgacaattg 2940 gcgcgacctg ttggttccta cggactgttc cggtttcgac tggtcagtct ccgattggat 3000 gctcgcggat gacatggagg tgagaaatcg cctaacaatc gactgcaacg agctcaccag 3060 acaccttagg gctgtttggc ttcaaggcat atcaaactcg gttttatgcc tgtcggatgg 3120 aaccatgtta gctcaacgag tacccggcgt gcagaaaagt ggttcgtaca acacttcgtc 3180 cacaaactca cgcgtccggg tcatggctgc ctatcactgt ggcgcctcgt gggctatcgc 3240 tatgggtgat gatgccctgg aagctccaga tacagacttg tcaaaatata aagatctggg 3300 cttcaaagtc gaggttagcg gagagttgga attctgttcg cacattttca agacccctaa 3360 cctcgccatt ccggttaatg aaaacaaaat gttgtaccgc ttgatccacg ggtacaatcc 3420 ggaatgtggc aattttgagg tggttcaaaa ctatctcaat gcagctgtct cagtgctgca 3480 tgagctccga catgatcggg agctttgcct aaaacttcaa gagtggttga tttctgacgt 3540 caccacaaaa ctaaactgag cacaaaacta gccggacaaa cgtaagttgc aagtgccgga 3600 agtcaagtct tacacataag cccaacattg attttcattt gttagcagga tttgctcttg 3660 gatttatatc ctcaatcccc atttcagttg ttggtgttta tctagtctac cttaaggttt 3720 cgacccacat tcgtgaaatt gttaatgagt acggtcgtcc ttagatccaa tggcaatggt 3780 tcgcgcagac gcagacagag agtcgctcgg cgaaggcctg ctgcaagaac gcagccagtg 3840 gttgtggtca cttccaacgg cccagccagg cgcggaagac gccgacgacc agttggtcct 3900 cggcgaggaa gaactccaag atctggagga ggaagccgtg gcgagacatt cgttttctca 3960 aaggattcac tcgcaggcaa ctcctctgga agtatcacct tcgggccgtc tctatcagag 4020 tatccggcat tccagaatgg agtactcaag gcctaccatg aatataagat cacaaattgt 4080 gtcttacagt tcgtcagcga ggcctcttcc acagcagccg gctccatctc ttatgagttg 4140 gacccccatt gcaaagcatc ttcactcgca tcaacgatca ataagttcac aatcaccaaa 4200 actggtgcgc ggagcttccc agcgaagatg atcaacgggt tagagtggca cccctcagat 4260 gaggatcagt tccgaattct ttacaaaggg aacggtgctt cttctgtggc tgggtctttt 4320 aagatcactc ttagagtcca gctacaaaac ccaaaatagg tagacgcgga acccggtccc 4380 agtccaggac catcacccga cccccccccc ccaccttcac catccccaga acctgctcct 4440 gttaaggagg aacgatttat cgtctattca ggggtggctc atacaatcat cagtgcccaa 4500 agcactgatg attctatcat agttagagat atcccagacc aacggtttag atacgttgag 4560 aacgaaaact tctactggtt tcagatagct gctcaatggt actcaaatac gaatacaaaa 4620 gcagttccga tgtttgtctt tccagtcccc atcggggaat ggtcagtcga aatatcaact 4680 gagggatatc aagctacgtc aagtaccacg gatcctaaca agggccgcat tgacgggctc 4740 atagcttatg ataactcaag tgaagggtgg aacattgggg ctggaagtaa cgttaccatc 4800 acgaacaaca aagctgacaa tagttggaaa tacggtcatc ctgatctgga aatcaactct 4860 tgtcacttca accagaacca agttttggag aaagatggta ttatttcttt ccatgtcaag 4920 gctacagaga aggaagctaa tttcttctta gtcgcccctc cagtccagaa aacctcgaag 4980 tataactacg ctgtctcata tggagcgtgg acggacagag atatggaatt cgggttgatt 5040 acagtcacgt tagatgagaa acgtggctcg ggttccccca ctcgcaaaag cttgcgcgct 5100 ggacacgcgg gagtaacgac caccactgat ttggtggcgt taccggagaa ggaaaactcc 5160 ggtatagaaa catctgaaac cccgtcagct ccggtcacca gctcaaaagc accgttgcca 5220 actgtttcag attcggagtc agaagacgat ccgttatcag ccgcaccaga tgtaggcttt 5280 ggcggaactc gtcttttgat tgatactgat atcaaaacaa tacccgatcc ggacgttgct 5340 gatgccttcg tgaacagcgc tcacgtgggt gaggatccat gggcagaagt tcgagcgttt 5400 aaaagcgctc agcgccctcc ccgtggaccg tcatcggttg ctagtggcag cctctctgga 5460 ggttcgctgc gcggaaacct cagaccgaaa actgaggatc cgaaagattc atccaaatct 5520 aaatctagaa aatggtcttt cggaagtccg cgatgactat aaactaaggc gaaggaaaat 5580 gcccaaaatc acccgtcaaa cgacgttaaa aggaggatta agaccctccc cccttcctgg 5640 ttcaacaacc ttgttccagg ctaggttctt gtctttaaaa gaagaagcta cttgagagat 5700 tccgatctct tgggagcttt ggt 5723 //