Dbfetch
ID EF521846; SV 1; linear; genomic RNA; STD; VRL; 5665 BP. XX AC EF521846; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 068, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5665 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5665 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 901a4261c0fa0c884162befc9f64f578. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5665 FT /organism="Barley yellow dwarf virus PAV" FT /host="oat" FT /isolate="068" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="USA:Alaska" FT /db_xref="taxon:2169986" FT primer_bind 1..19 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(142..1158,1158..2744) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A308" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A308" FT /protein_id="ABP68785.1" FT /translation="MFFEILIGASTKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMYAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKNTAEARDAATTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYRAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLADSYSA FT GKRAMYHKAIASLKTVPYNQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLKYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 142..1161 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A309" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A309" FT /protein_id="ABP68786.1" FT /translation="MFFEILIGASTKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMYAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKNTAEARDAATTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A310" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A310" FT /protein_id="ABP68787.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPAPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHMGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR FT EAAKAPSTLLYEKTPKKSYNFLTRFVEANRSPATPAAPTVSTVSNMTREQLAEYTRIRR FT SLGLTAAKEYKAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U4" FT /protein_id="ABP68788.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q45ZZ3" FT /protein_id="ABP68789.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR" FT CDS 4917..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A2Q5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A2Q5" FT /protein_id="ABP68790.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV" FT primer_bind complement(5650..5665) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5665 BP; 1678 A; 1363 C; 1387 G; 1237 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacactcgtt 60 ttgtgttcga gaagtagttg caacaacggt ccccttattg cctgacaagc taagggccac 120 ccttctatcc ccaccgccat catgttcttc gaaatactta taggagctag cactaaggcg 180 gtaaaagact tcattagcca ttgttactct cgtttaaaat ctatatatta ctcttttaaa 240 cgatggctaa tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgc 300 tttgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga gtttgccgag 360 agggaggatg aggtggaaga ggcgaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaactgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtctat 480 gcgccacttt cctgcgagcc taccaggcag gagctagaag ccaagagcga gaagctcgaa 540 aagcttctag aagaacagca ccaattcgag gtgcgagcgg ccaaaaaata catcaaggaa 600 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggataacgcc agagctgctg ccaagatcgg agcagaaatg 720 tacgcccctg ttgacgtgca ggacctctat agtttcacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaga aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaagaat accgccgaag ccagggacgc cgccaccacc 900 tggataacag agacagttaa gctgaagaac tcaacgctta acgcagatga attgtctctg 960 gccaccatcg cccgctacgt agaaaacgta ggggacaaat tcaaactcga cattgctagc 1020 aagacatatc taaagcaagt cgcatcgatg tcagtaccaa ttccaactaa caaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaactcacc taggtcttgt atatagagca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccggagcatg acattttcac tgatacgatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggctg 1500 acagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatct ttgaagactg 1560 tcccttataa tcagaaggat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgtttg 1740 gatcccccac tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc ccttgcactt gaacaccaaa tcaccaacaa catcaagatg tttgttgaag 1980 ataaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gttaataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgtaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tcaagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggag caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agacagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggtctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatca aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtctt 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac 3300 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaaccacc actgacacgg caggacaatt 3420 cattatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacaccgga 3480 accgaaacct gcaccagaac ctacaccaac cccacagcca acgccagctc cacagcccgc 3540 acccgaaccg actcctgcac ctgcccccaa gagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc tcggtgggca 3660 gtcgatgcag tatatagaga atgagaagtg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtgtctg cacaggcagc cttcgtttac ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacatgggag gcaacgagga 3840 tggttattgg attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg 3900 caactacaaa gggtgcagtt tcaagaactt cttggcaacc aacacttgga gaccaggcca 3960 taaggatctc aagttgaatg attgccagtt cacagatgga caaatagttg agagggatgc 4020 cgtgatgtct ttccatgtgg aagcaacagg tactgacgcc tgtttctatc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 acggatggaa tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg 4200 cataacaagg catgctgaaa cacccatacg ttccaaacac attcttgtgt ccgaacagta 4260 tgagcaacct ttacccacca taatcgatca aggcttgtgt gatgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggag tatgaagctg caacagccga aattccagat gctgaagagg atgttttgcc 4440 ctccaaggaa cagttgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaagcc 4500 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg aagacgtgcc 4560 accaattgcg cggcaaaaac tacgtgaagc cgcaaaagca ccctccacgt tactctacga 4620 gaaaactccc aagaagagct acaatttctt gactcgtttt gtggaggcga ataggtcccc 4680 tgcaactcca gctgccccca cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc 4740 ggagtacact agaattagaa ggtcccttgg actcacagca gcgaaggaat acaaggcgca 4800 atttcagtga aggtaacacc actagcacaa gtcggatcct gggaaacagg cagaactacg 4860 gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc gtattgtgtt tggccgatgg 4920 atgacctcca cgttatcgcc gtttgtattt ttgctctaac tgtgttgaca gggctaggcg 4980 cggtgatcgg ctgttgtgct ggttgccttc tcccccctcc ctccttccgc tcttctgttt 5040 aagcaaaaat ctctcggtct gtgcgagaga aacccaaaaa tatcggggag ctccggctca 5100 gtgaggggat taacgacccc cagaaaaggc tggtcttggc ggacttgaat aacccgctat 5160 aagacgaagt ggtaaccgcc actgatcaaa tggtgaacat gcttctgtgt tgtacactgc 5220 cccggagccc accgggtcaa caaggctatt ccaccagctc gatgaaatga gagtggagtg 5280 gacggagtgg gtgacttcga gatgtacacc cgatcgtcag gattgaagac gttaaaactc 5340 gacgacctag tgcaagtcgt taaactgact agggtggata caccacaccc tgcctaactt 5400 gtaggcatac ccacgatacg aaacgtgggt ctcttggagc cactacctgt gatgcaaggt 5460 agggtatgag tcttagcaag ctctgtgcca ggagatggac ataaaccata gcaatcctgc 5520 aagtcatctt ggcaaaccat aggtgaacca tgccacgggc ctgcctaccg aaaggaaaag 5580 cagtatccaa cacagcaatg tgttgggggt tacacccttc ggggtactct taacgctgac 5640 actcgaaaga gcagttcggc aaccc 5665 //