ID EF521839; SV 1; linear; genomic RNA; STD; VRL; 5696 BP. XX AC EF521839; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Cereal yellow dwarf virus - RPV isolate 046, complete genome. XX KW . XX OS Cereal yellow dwarf virus RPV OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5696 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5696 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; c7ff2d7cb4d16592b1061216ae7e639b. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5696 FT /organism="Cereal yellow dwarf virus RPV" FT /isolate="046" FT /serotype="RPV" FT /mol_type="genomic RNA" FT /country="USA:New York" FT /db_xref="taxon:2170100" FT primer_bind 1..25 FT /note="derived from viral specific primer used for RT-PCR" FT CDS 145..915 FT /codon_start=1 FT /product="P0" FT /note="ORF0; putative suppressor of gene silencing" FT /db_xref="GOA:A5A2W6" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:A5A2W6" FT /protein_id="ABP68743.1" FT /translation="MLIAQPCGRVLVFDVASRTPSFFTRYSVELSLRALDPLFTRAVTD FT FRYTQNEIDLFCVSLGFLLPILLTGESYSWRGHLNLPLSYTELLVRWGLAVGYFPAFSA FT GGDIRQNPELRIDLSTMSTRSFYEQFLLRSNTSGLAKAIVGQQECFQSGMESFKRFLHY FT RLTCFESCLPRPRWESPLAPGPYLDRAFEATLLGRMVGHNQLLFTGLSSDITRYYNELV FT VEGVPVAFWDAAGITLHHAGEEYFSNSYIQKILQ" FT CDS join(296..1672,1672..3531) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2W7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:A5A2W7" FT /protein_id="ABP68744.1" FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTLTSPFLTPNYLFDGGSQ FT WGTSLPSPLVVTFGKTQNSASTCPPCQPALSTSSSYSDLIRVGWQKLSLDSKSAFKAAW FT SLLKDSCTTASRALKAAFHDLVGKALWLLVLIWTGLLRQLFSAVWSAITNYSLPVCLLI FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPSTP FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFHSSRTSGSIPITEFR FT VIFESKTMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFANRGRGAFKSKSGINWEDIEDESG FT NREGGGVRRNKRSSGKQGYRHPRRRRVPKEDCCSFFAEGTAAPRCIPTHQHNWEQNSYM FT SNCYCNIPGHGCAYWTITARNHEQHNESAGPEDRYVEDREIDSGSSRESSSEETTRQAW FT LKETARSWQKFFADIYTWDVSTSKQEVPGFEQVGKFSPQYYPRPRGESEWGKKLCAEHP FT LLGEKTTGFGWPQVGASAELTSLRLQAARWLERSESAKIPSDAARENVINRTVQAYSNC FT KTNTPRCTRGELSWETFKIDFLEAIKSLQLDAGVGLPMITAGLPTHRGWVEDPDRLPVL FT AQLTFDRLLTMSKASLEARSPEQLVKENLCDPIRLFVKQEPHKQSKLDEGRYRLIMSVS FT LIDQLVARVLFQRQNKSEIALWSAIPSKPGFGLSTEDQVTKFMDVLAGNVGASPEEVCD FT NWRDLLVPTDCSGFDWSVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSILCL FT SDGTMLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKY FT KDLGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAA FT VSVLHELRHDRELCLKLQEWLISDVTTKLN" FT CDS 296..2260 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2W8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:A5A2W8" FT /protein_id="ABP68745.1" FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTLTSPFLTPNYLFDGGSQ FT WGTSLPSPLVVTFGKTQNSASTCPPCQPALSTSSSYSDLIRVGWQKLSLDSKSAFKAAW FT SLLKDSCTTASRALKAAFHDLVGKALWLLVLIWTGLLRQLFSAVWSAITNYSLPVCLLI FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPSTP FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFHSSRTSGSIPITEFR FT VIFESKTMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFANRGRGAFKSKSGINWEDIEDESG FT NGKAAASAVTNAAAANKVIATPGVAESQKKTAVPSSPKAPQPPAASQPTSTTGSRTPIC FT PIATATSPDTAVPTGPSQQEIMNNIMNLLVQRIDMSKIEKSIVDQVASQALKKPRVKRG FT SKKRPAAGKSSSPTSTPGTYQHPNKKSQASNRLGNSPPSTTRAPAANQNGGRNSVPNTL FT SWVRKLPVSGGPKSGHPLN" FT CDS 3718..5529 FT /codon_start=1 FT /transl_except=(pos:4330..4332,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2W9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR011050" FT /db_xref="UniProtKB/TrEMBL:A5A2W9" FT /protein_id="ABP68746.1" FT /translation="MSTVVLKSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPKXVDAEPGPSPGPSPDPPP FT PPSPSPEPAPAKEERFIVYSGVAHTTISAQSTDDSIIVRDIPDQRFRYVENENFYWFQI FT AAQWYSNTNTKAVPMFVFPVPIGEWSVEISTEGYQATSSTTDPNKGRIDGLIAYDNSSE FT GWNIGAGSNVTITNNKADNSWKYGHPDLEINSCHFNQNQVLEKDGIISFHVKATEKEAN FT FFLVAPPVQKTSKYNYAVSYGAWTDRDMEFGLITVTLDEKRGSGSPTRKSLRAGHAEVT FT TTTDLVALPEMENFGIETSETPLAPVTSSKAPLPTVSDSESEDDPLSAAPDVGFGGTRL FT LIDTDIKTIPDPDVADALVNSAHVGVDPWAEVRAFKRAQRPPHGPSSVASGSLSGGSLR FT GSLRPKTEDPKDSSKSKSRKWSLGSLR" FT CDS 3718..4332 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:A5A2X0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2X0" FT /protein_id="ABP68747.1" FT /translation="MSTVVLKSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK" FT CDS 3743..4204 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A5A2X1" FT /protein_id="ABP68748.1" FT /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG FT EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV FT SYSSSARPLPQQPAPSLTSWTPIAKHLHSHQRSISSQSPKLVRGASQRR" FT primer_bind complement(5674..5696) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5696 BP; 1453 A; 1516 C; 1354 G; 1373 T; 0 other; acaaagatta ccgaggggtg tcttcaacag ttcagacgct cttaagctca ctgttcccgc 60 gctgtttcga cgctttcagc tcacagccca taaaaccccc ctcctcccgc tctagcgatc 120 aacttgcgtg ttcgttatta acgcatgctc atcgcccaac cttgcgggcg agttcttgtg 180 ttcgacgtcg cctcccgcac gccatcgttc ttcactcgtt atagtgttga actctcgctc 240 cgtgctctag atccactctt cacgcgagca gtaacagatt tccgatacac ccaaaatgaa 300 atcgatttat tttgtgtgtc tcttggcttt ctgttgccaa ttctcctcac aggagaatct 360 tactcttggc gcggtcacct taacctcccc ctttcttaca ccgaactact tgttcgatgg 420 gggctcgcag tggggtactt ccctgccttc tccgctggtg gtgacattcg gcaaaaccca 480 gaactccgca tcgacctgtc caccatgtca acccgctctt tctacgagca gttcctactc 540 agatctaata cgagtgggtt ggcaaaagct atcgttggac agcaagagtg ctttcaaagc 600 ggcatggagt cttttaaaag attcctgcac taccgcctca cgtgctttga aagctgcctt 660 ccacgacctc gttgggaaag ccctttggct cctggtcctt atctggacag ggcttttgag 720 gcaactcttc tcggccgtat ggtcggccat aaccaactac tctttaccgg tttgtcttct 780 gatatcacta ggtattataa cgagttggtt gtggaaggcg tgccggtggc tttttgggac 840 gctgccggca ttactttgca tcacgctggt gaagaatatt tttcgaattc ttacattcaa 900 aagattcttc aatgagaaaa ctgtctcagg ttatgacagt tattcgattc ccagcacccc 960 tccgaagcgg agcgtcatca tgatgcgacg ccaaaataag gagcacattg gatatgcgaa 1020 ctgtattcgt cttttcgacg gacggaacgc aattgtcaca gttgctcaca atatagagga 1080 gggttgctct ttccattcct cacggactag tggttccatc ccaatcactg aatttcgcgt 1140 tatctttgaa agcaaaacca tggatatcgc cattctggtg ggacccatca attgggaatc 1200 gattctcgga tgcaaaggag tccactttac caccgctgac cgcttggcag aatgtccagc 1260 ggctctttat cttcttgata gcgatggtca gtggcgctca aactcggcga agatttgtgg 1320 tcatttcgac aacttcgccc aagtcttgtc caacactaaa gtcggtcact ccggtgccgg 1380 ttatttctat ggcaagactc tcgttggcct ccataaaggc catcctggca aagatttcaa 1440 ttttaatctg atggctcctt tgccaggaat acccggcttg acctccccgc agtacgtcgt 1500 ggaatccgac cccccccagg gattggtttt ccccgaagaa gtcactgaat caatcgaaac 1560 cgcgattaag gaggcaacaa tgtacaagaa tgtcttcgcc aatagaggac gtggcgcttt 1620 taaatctaaa agcggcatca actgggaaga catcgaagac gagtcgggaa acgggaaggc 1680 ggcggcgtcc gccgtaacaa acgcagcagc ggcaaacaag gttatcgcca cccccggcgt 1740 cgccgagtcc caaaagaaga ctgctgttcc ttcttcgccg aaggcaccgc agccccccgc 1800 tgcatcccaa cccaccagca caactgggag cagaactcct atatgtccaa ttgctactgc 1860 aacatccccg gacacggctg tgcctactgg accatcacag caagaaatca tgaacaacat 1920 aatgaatctg ctggtccaga ggatcgatat gtcgaagatc gagaaatcga tagtggatca 1980 agtcgcgagt caagctctga agaaaccacg cgtcaagcgt ggctcaaaga aacggcccgc 2040 agctggcaaa agttcttcgc cgacatctac acctgggacg tatcaacatc caaacaagaa 2100 gtcccaggct tcgaacaggt tgggaaattc tccccccagt actacccgcg cccccgcggc 2160 gaatcagaat gggggaagaa actctgtgcc gaacaccctc tcttgggtga gaaaactacc 2220 ggtttcgggt ggccccaagt cggggcatcc gctgaactga catctcttcg gctgcaagca 2280 gctcgctggc tcgaacgttc cgagtcagct aaaattccat cagatgctgc tagagagaac 2340 gtgatcaatc gcaccgtaca ggcgtactcg aattgcaaaa ccaatacgcc gaggtgcaca 2400 cgaggtgagt taagttggga aacgttcaaa attgacttcc ttgaagccat caaatcgctc 2460 caacttgacg ctggcgtcgg attaccgatg atcaccgcgg ggctccccac ccatcgtggg 2520 tgggttgaag acccagatcg tttgccagtg ttagctcagc ttacctttga ccgcctactt 2580 acgatgtcaa aggcaagctt ggaagctcgc tccccggagc aactcgtgaa ggagaatctc 2640 tgtgatccta ttcgtctctt tgtaaaacaa gagccacata aacagagtaa gcttgatgag 2700 ggacgttacc gcctcatcat gtcagtctcc ttgattgatc aattggtagc ccgggttttg 2760 tttcaaagac aaaacaaatc cgaaatcgcg ttgtggagcg cgattccgtc aaaacccggt 2820 tttggattat ccaccgagga ccaagttaca aaattcatgg atgtcctcgc cgggaacgtt 2880 ggtgcgtctc ccgaagaggt ctgcgacaat tggcgcgacc tgttggttcc cacggactgt 2940 tccggtttcg actggtcagt ctccgattgg atgctcgcgg atgacatgga ggtgagaaat 3000 cgcctaacaa tcgactgcaa cgagctcacc agacacctta gggctgtttg gcttcagggc 3060 atatcaaact cgattttatg cctgtcggat ggaaccatgt tagctcaacg agtacccggc 3120 gtgcagaaaa gtggttcgta caacacttcg tccacaaact cacgcgttcg ggtcatggct 3180 gcctatcact gtggcgcctc gtgggctatc gctatgggtg atgatgccct ggaagctcca 3240 gacacagact tgtcaaaata taaagatctg ggcttcaaag tcgaggttag cggagagttg 3300 gaattctgct cgcacatttt caagacccct aacctcgcca ttccggttaa tgaaaacaaa 3360 atgttgtacc gcttgatcca cgggtacaat ccggaatgtg gcaattttga ggtggttcaa 3420 aactatctca atgcagctgt ctcagtgctg catgagctcc gacatgatcg ggagctttgc 3480 ctaaaactcc aggagtggtt gatttctgac gtcaccacaa aactaaactg agcaccaaaa 3540 ctagccggac aaacgtaagt tgcaagtgcc ggaagtcaag tcttacacat aagcccaaca 3600 ttgattttca tttgttagcg ggatttgccc ttggatttat atcctcaatc cccatttcag 3660 ttgttggtgt ttatctagtc taccttaagg tttcgaccca cattcgagaa attgttaatg 3720 agtacggtcg tccttaaatc caatggcaat ggttcgcgca gacgcagaca gagagtcgct 3780 cggcgaaggc ctgctgcaag aacgcagcca gtggttgtgg tcacttccaa cggcccagcc 3840 aggcgcggaa gacgccgacg accagttggt cctcggcgag gaagaactcc aagatctgga 3900 ggaggaagcc gtggcgagac attcgttttc tcaaaggatt cactcgcggg caactcctct 3960 ggaagtatca ccttcgggcc gtctctatca gagtatccgg cattccagaa tggagtactc 4020 aaggcctacc atgaatataa gatcacaaat tgtgtcttac agttcgtcag cgaggcctct 4080 tccacagcag ccggctccat ctcttacgag ttggaccccc attgcaaagc atcttcactc 4140 gcatcaacga tcaataagtt cacaatcacc aaaactggtg cgcggagctt cccagcgaag 4200 atgatcaacg ggttagagtg gcacccctca gatgaggatc agttccgaat tctttacaaa 4260 gggaacggtg cttcttctgt ggctgggtct tttaagatca ctcttagagt ccagctacaa 4320 aacccaaaat aggtagacgc ggaacccggt cccagtccag gaccatcacc cgaccccccc 4380 cccccacctt caccgtcccc agaacctgcc cctgctaagg aggaacgatt tatcgtctat 4440 tcaggggtgg ctcacacaac catcagtgct caaagcactg atgattctat catagttaga 4500 gatatcccag accaacggtt tagatacgtt gagaacgaaa acttctactg gtttcagata 4560 gctgctcaat ggtactcaaa taccaacaca aaagcagttc cgatgtttgt ctttccagtc 4620 cccatcgggg aatggtcagt cgaaatatca actgagggat atcaagctac gtctagtacc 4680 acggatccta acaagggccg cattgacggg ctcatagctt atgataactc aagtgaaggg 4740 tggaatatcg gggctggaag taacgttacc atcacgaaca acaaagctga caatagttgg 4800 aaatacggtc atcccgatct ggaaatcaac tcttgtcact tcaaccagaa tcaagttttg 4860 gagaaagatg gtattatttc tttccatgtc aaggccacag agaaggaggc taatttcttc 4920 ttagtcgccc ctccagtcca gaaaacctcg aagtataact acgctgtctc atatggagcg 4980 tggacggaca gagacatgga attcggattg attacagtca cgttagatga gaaacgtggc 5040 tcgggttccc ccactcgcaa aagcttacgc gctggacacg cggaagtaac gaccaccact 5100 gatttggtgg cgttaccgga gatggaaaac ttcggtatag aaacatctga aaccccgtta 5160 gctccggtca ccagctcaaa agcaccgttg ccaaccgtct cggattcgga gtcagaagac 5220 gatccgttat cagccgcacc agatgtaggc tttggcggaa ctcgtctttt aattgatact 5280 gatatcaaaa caatacccga tccggacgtt gctgatgccc tcgtgaacag cgctcacgtg 5340 ggtgtggatc catgggcaga agttcgagcg tttaagagag ctcagcgtcc tccccatgga 5400 ccgtcatcgg ttgctagcgg cagcctctct ggaggttcgc tgcgtggaag cctcagaccg 5460 aaaactgagg atccgaaaga ttcatccaaa tctaaatcta gaaaatggtc tctcggaagt 5520 ctgcgatgac tataaactaa ggcgaaggaa aatgccttaa atcacccgtc aagcgacgtt 5580 aaaaggagga ttaagaccct ccccccttcc tggttcaaca accttgttct aggctaggtt 5640 cttgtcttta aaagaagaag ctacttgaga gattccgatc tcttgggagc tttggt 5696 //