ID EF521837; SV 1; linear; genomic RNA; STD; VRL; 5665 BP. XX AC EF521837; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 043, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5665 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5665 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 5b6eb7d61d2aa91aa5d58cc1998f9b9b. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5665 FT /organism="Barley yellow dwarf virus PAV" FT /isolate="043" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="USA:California" FT /db_xref="taxon:2169986" FT primer_bind 1..19 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(142..1158,1158..2744) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2V4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2V4" FT /protein_id="ABP68731.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNLCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPVMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTSKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIARKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLRYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYSETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 142..1161 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2V5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2V5" FT /protein_id="ABP68732.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNLCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPVMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTSKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2V6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2V6" FT /protein_id="ABP68733.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTLEPKPAPEPTPTPQPT FT PAPQPAPKPTPAPAPKRFFEYIGTPTGTISTRENSDSISVSELGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAEAPIR FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARRKLR FT EAANAPSTLLYEKTPKKSNNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U4" FT /protein_id="ABP68734.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A5A2V8" FT /protein_id="ABP68735.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLMGRNSRNQR" FT CDS 4917..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A2Q5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A2Q5" FT /protein_id="ABP68736.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV" FT primer_bind complement(5650..5665) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5665 BP; 1669 A; 1368 C; 1388 G; 1240 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacactcgtt 60 ttgtattcga gaagtagtcg caacaacggt ccccttattg cctgacaagc taagggccac 120 ccttctttcc ccaccgccat catgtttttc gaaatactta taggagctag cgctaaggcg 180 gtcaaagact tcatcagtca ctgctattct cggttgaaat ctatatatta ttctttcaaa 240 cgatggctga tggagatatc tgggcagttc aaggcccatg acgcctttgt caacttgtgc 300 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga gtttgccgag 360 agggaggatg aggtggaaga ggcaaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaactgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtctat 480 gcgccacttt cctgcgagcc taccaggcag gagctagaag tcaagagcga gaagctcgaa 540 aaacttctag aagaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa 600 aagggccgcg gcttcatcaa ctgctggaat gacttgcgga gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg ccaagatcgg agcagaaatg 720 ttcgcccccg tcgacgtgca ggacctctac agttttacag aggtcaagaa agtggagacc 780 ggcctcatga aagaggtcgt gaaagagaga aacggcgaag aagagaaaca ccttgagccc 840 gtcatggaag aggtgagatc catcaaggac accgccgaag ccagggacgc cgcctccact 900 tggataacag agacagttaa gctgaagaac tcaacgctta acgcagatga attgtctctg 960 gccaccatcg cccgctacgt tgaaaacgta ggggataaat tcaaactcga cattgctagt 1020 aagacatacc taaagcaagt cgcatcgatg tctgtaccaa ttcctactag caaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 caattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag atacctaagc caaacccacc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccagagcatg acattttcac tgatacaatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta 1500 acagctatag cgcaggaaag agggccatgt atcataaagc cattgcatca ctgaggactg 1560 tcccttatca tcagaaggat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgttcg 1740 gatcccccac tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccagga 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 atgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tcttgcactt gaacaccaaa tcaccaacaa catcaagatg tttgttgaag 1980 ataaaatgct taggttcaag gtaagaggcc acaggatgtc cggtgacatt aataccagca 2040 tgggaaataa gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccggtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggaa caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tatagcgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat tgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggaa tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tataataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac 3300 cgcctcaaag gtcttcagag ccgaagcgat taatgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaaccacc actgacacgg caggacaatt 3420 tattatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacattgga 3480 accgaaacct gcaccagaac ctacaccaac cccacagccc acgccagctc cacagcccgc 3540 acccaaaccg actcctgcac cagcccccaa aagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag aaaactctga cagtatttct gtcagcgagc tcggtgggca 3660 gtcgatgcag tatatagaga atgaaaaatg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtgtctg cacaggcagc ctttgtttac ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacataggag gcaacgagga 3840 tggttattgg attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg 3900 caactacaaa gggtgcagtt tcaagaactt cttggcaacc aatacttgga gaccaggcca 3960 taaggatctc aagttgaacg attgccagtt cacagatgga caaatagttg agagggatgc 4020 cgtcatgtct tttcatgtgg aagcaacagg tactgacgcc tgtttctatc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 acgaatggaa tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg 4200 cataacaagg cacgctgaag cacccatacg ttccaaacac attcttgtgt ccgaacagta 4260 tgagcaacct ttacccacca taatcgatca aggcttgtgt gatgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggaa tatgaagctg caacagccga aattccggat gctgaagagg atgttttgcc 4440 ctccaaggaa cagctgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaaacc 4500 caaggaacct gaagtacttg gaacatacca gggacagaac atttaccctg aagacgtgcc 4560 accaattgcg cggcgaaagt tgcgcgaagc cgcaaatgca ccctccacat tactctacga 4620 gaaaactccc aagaagagca acaatttctt gactcgtttt gtggaggcga ataggtcccc 4680 tacaactcca gctgccccaa cagtgtcaac tgtatcaaat atgacaaggg aacagcttgc 4740 ggagtacact agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca 4800 atttcagtga aggtaacacc actaacacaa atcggatcct gggaaacagg cagaactacg 4860 gttcgtaagc tcgggtaggc tgtcaaccta ccgccgtatc gtattgtgtt tggccgatgg 4920 atgacctcca cgttatcgcc gtttgtattt ttgctctaac tgtgttgaca gggttaggcg 4980 cggtgatcgg ctgttgcgcc ggttgccttc tcccccctcc ctccttccgc tcttctgttt 5040 aagcaaaaat ctctcggtct gtgcgagaga agcccaaaaa tatcggggag cctcggctca 5100 gtgaggggat taacgacccc cagtaaaggc tggtcttggc ggacttgaat aacccgctat 5160 aggacgaagt ggtaaccgcc actgatcaaa tggtgaacat gcttctgtgt cgtacactgc 5220 cccggagcct accgggttaa caaggctatt ccaccagctc gatgaaatga gagtggagtg 5280 gacggagtgg gtgacttcga tatgtacacc cgatcgtcag gattgaagac gttaaaactc 5340 gacgacctag tgcaagtcgt taaactgact agggtggata caccacaccc ggcctaactt 5400 gtaggcatac ccacgatacg aaacgtgggt ctcttggagc cactacctgt gatgcaaggt 5460 agggtatgag tcttagcaag ctctgtgcca ggggatggac ataaaccata gcaatcctgc 5520 aagtcacctc ggcgaatcat aggtgaaccg tgccacgggc ctgcctaccg aaaggaaaag 5580 cagtatccaa cacagcaatg tgttgggggt tacacccttc ggggtactct taacgctgac 5640 actcgaaaga gcagttcggc aaccc 5665 //