ID EF521834; SV 1; linear; genomic RNA; STD; VRL; 5665 BP. XX AC EF521834; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 013, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5665 RA Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5665 RA Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; e97d446096ca566cd5aeab899b0771ac. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5665 FT /organism="Barley yellow dwarf virus PAV" FT /host="oat" FT /isolate="013" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="USA:Iowa" FT /collected_by="Allen Miller" FT /db_xref="taxon:2169986" FT primer_bind 1..19 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(142..1158,1158..2744) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2T6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2T6" FT /protein_id="ABP68714.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSERLEKLLEEQHLFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVRE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFSILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHGIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLRTTPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 142..1161 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2T7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2T7" FT /protein_id="ABP68713.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSERLEKLLEEQHLFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVRE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2T8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2T8" FT /protein_id="ABP68717.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRSTGGAEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSVRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPTPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYSNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPDDVPPIARQKLR FT EAAKAPSTLLYEKTPKKSNNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:A5A2T9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2T9" FT /protein_id="ABP68715.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRSTGGAEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSVRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q45ZZ3" FT /protein_id="ABP68716.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR" FT CDS 4917..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A2U1" FT /protein_id="ABP68718.1" FT /translation="MNDLHVIAVCILALTVLTGLGAVIGCCAGCLSPPPSLRSSV" FT primer_bind complement(5650..5665) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5665 BP; 1676 A; 1370 C; 1381 G; 1238 T; 0 other; agtgaagatt gaccatctca caaaagctgt tgcgtgcttg caacacacta cacactcgtt 60 ttgtgttcga gaagtagttg caacaacggt ccccttattg cctgacaagc tgagggccac 120 ccttctatcc ccaccgccat catgttcttt gaaatactta taggagctag cgctaaggcg 180 gtcaaagact tcatcagtca ttgttactct cgtttaaaat ctatatatta ttcttttaaa 240 cgatggctga tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgc 300 ttcggacaca tggctgacat tgaggacttc gaggcagagc tcgctgagga gtttgccgag 360 agggaggatg aggtggaaga ggcgaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaactgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtctat 480 gcgccacttt cctgcgagcc taccaggcag gagctagaag tcaagagcga gaggctcgaa 540 aaacttctag aagaacagca cctattcgag gtgcgagcgg ccaagaaata tatcaaggaa 600 aaaggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gatgtcaagg acgaggcgaa ggacaacgcc agagctgctg ccaagatcgg agcagaaatg 720 ttcgcccccg ttgacgtaca ggacctctac agttttacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gagagagaaa aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaaggac accgccgaag ccagggacgc cgcctccact 900 tggattacag agacagttaa gctgaaaaac tcaacactta acgcagatga attgtctctg 960 gccaccatcg cccgctacgt tgaaaacgta ggggacaaat tcaaactcga cattgctagc 1020 aagacatatc taaagcaagt cgcatcgatg tctgtaccaa ttccaactaa caaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattct 1200 ccattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggata 1380 aagcaatcta ccccccccgc ccagagcatg gcattttcac tgatacaatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtaaaacata tccagcgcaa ctcctggcta 1500 atagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatct ttgaggacta 1560 ccccttatca tcagaaagat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgctccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgttcg 1740 gatcccccac tgtgctttct ggctatgaca actttaaaca gggaagaatc atagccaaga 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tcttgcactt gaacaccaaa tcaccaacaa catcaagatg tttgttgaag 1980 acaaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaacaa gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 aactctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggag caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt gagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagatcaac aggcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtgtccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccttgggtag ctacattaat tccttcacaa tcagcaggac 3300 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaaccacc actgacacgg caggacaatt 3420 catcatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacaccgga 3480 accgaaacct gcaccagaac ctacaccaac cccacagcca acgccagctc cacagcccac 3540 acccgaaccg actcctgcac ctgtccccaa aagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc tcggtgggca 3660 gtcaatgcag tacatagaga atgagaagtg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtatctg cacaggcagc cttcgtttac ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg agggctttca atccgttgac cacataggag gcaacgagga 3840 tggttattgg attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg 3900 caactacaaa gggtgcagtt tcaagaactt cttggcaacc aacacttgga gaccaggcca 3960 taaggatctc aagttgaatg attgccagtt cacagatgga caaatagttg agagggacgc 4020 cgtgatgtct ttccatgtgg aagcaacagg tactgacgcc tgtttctatc tcatggcacc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt actcaaacaa 4140 acggatggaa tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg 4200 cataactagg catgctgaaa cacctatacg ttccaaacac attcttgtgt ccgaacagta 4260 tgagcaacct ttacccacca taatcgatca aggcttgtgt gatgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggag tatgaagctg caacagccga aattccagat gctgaagagg atgttttgcc 4440 ctccaaggaa cagttgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaagcc 4500 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg atgacgtgcc 4560 accaattgcg cggcaaaaac tacgtgaagc cgccaaagca ccctccacac tactctacga 4620 gaaaactccc aagaagagca acaatttctt gactcgcttt gtggaggcga ataggtcccc 4680 tacaactcca gctgccccaa cagtgtcaac tgtatcaaat atgacaaggg aacagcttgc 4740 ggagtatact agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca 4800 atttcagtga aggtaacacc actagcacaa atcggatcct gggaaacagg cagaactacg 4860 gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc gtattgtgtt tggccgatga 4920 atgacctcca cgttatcgcc gtttgtattc ttgctctaac tgtgctgaca gggttaggcg 4980 cggtgatcgg ctgttgtgcc ggttgccttt cccctccccc ttccctccgc tcttctgttt 5040 aagcaaaagt ctctcggtct gtgcgagaga aactcaaaaa tatcggggag ctacggctca 5100 gtgaggggat taacgacccc cagtaaaggc tggtcttggc ggacttgaat aacacgctac 5160 aagacgaagt ggtaaccgcc actgatcaaa tggtgaacat gcttctgtgt cgtacactgc 5220 cccggagccc accgggtcaa caaggctatt ccaacagctc gatgaaatga gagtggagtg 5280 gacggagtgg gtgacttcga gatgtacacc cgatcgtcag gattgaagac gttaaaactc 5340 aacgacctag tgcaagtcgt taaactgact agggtggata caccacaccc ggcctaactt 5400 gtaggcatac ccacgatacg aaacgtgggt ctcttggagc cactacctgt gatgcaaggt 5460 agggtacgag tcttagcaag ctctgtgcca ggagatggac ataaaccata gcaatcctgc 5520 aagtcatcct ggcgaaccat aggtgaaccg tgccacgggc ctgcctaccg aaaggaaaag 5580 cagtatccaa cacagcaatg tgttgggggt tacacccttc ggggtactct taacgctgac 5640 actcgaaaga gcagttcggc aaccc 5665 //