Dbfetch
ID EF521833; SV 1; linear; genomic RNA; STD; VRL; 5647 BP. XX AC EF521833; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 015, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5647 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5647 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 9f3c719b5a3405e49795a7ae1b4597ff. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5647 FT /organism="Barley yellow dwarf virus PAV" FT /host="oat IA04116" FT /isolate="015" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="USA:Iowa" FT /collected_by="W.A. Miller" FT /db_xref="taxon:2169986" FT primer_bind 1..19 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(142..1158,1158..2744) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2T0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2T0" FT /protein_id="ABP68707.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIREKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFAYPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 142..1161 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2T1" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2T1" FT /protein_id="ABP68708.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIREKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2858..4792 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2T2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2T2" FT /protein_id="ABP68709.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPAPQPA FT PEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETKVIDSFW FT STNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWG FT VGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGTDACFYL FT MAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIRSKHILV FT SEQYERPLPTIINQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATAEIPDAE FT EDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLREAANAP FT STLLYEKTPKKSNNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRKSLGLTA FT AKEYRAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U4" FT /protein_id="ABP68710.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A5A2T4" FT /protein_id="ABP68711.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPEDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR" FT CDS 4899..5024 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A2T5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A2T5" FT /protein_id="ABP68712.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLHPPLSLRPSV" FT primer_bind complement(5632..5647) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5647 BP; 1660 A; 1357 C; 1390 G; 1240 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacactcgtt 60 ttgttttcga gaagtagttg caacaacggt ccccttattg cctgacaagc tgagggccac 120 ccttctatcc ccaccgccat catgttcttc gaaatactta taggagctag cgctaaggcg 180 gtcaaagact tcatcagtca ttgttactct cgtttgaaat ctatatatta ttcgttcaaa 240 cgatggctga tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgc 300 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga gtttgccgag 360 agggaggatg aggtggaaga ggcaaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaactgggg tgaccgaggc ttggaccgac ttcttcacga agtcgagagg tggcgtctat 480 gcgccgcttt cctgcgagcc taccaggcag gagctagaag ttaagagcga gaagctcgaa 540 aaacttctag aagaacagca ccaattcgag gtgcgagcgg ccaagaaata cattagggaa 600 aaaggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg ccaagatcgg agcagaaatg 720 ttcgcccctg ttgacgtgca agacctctac agtttcacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaga aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaaggac accgccgaag ccagggatgc cgcctccact 900 tggataacag agacagttaa gctgaagaac tctacgctta acgccgatga attgtctctg 960 gccaccatcg cccgctacgt tgaaaacgta ggggacaaat tcaaactcga cattgctagc 1020 aagacatatc taaagcaagt cgcatcgatg tctgtaccaa ttccaactaa caaggacatc 1080 aaattaaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ccattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccagagcatg acattttcac tgatacgatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta 1500 acagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatct ttgaggactg 1560 tcccttatca tcagaaggat gctaatgtgc aagctttcct gaagaaggag aaacattgga 1620 tgaccaagga cattgccccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgtttg 1740 gatcccccac tgtgctttct ggctacgaca actttaaaca aggaagaatc atagccaaga 1800 agtggcaaaa gtttgcatac cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gtgaactggc tcttgcactt gaacaccaaa tcaccaacaa cattaagatg tttgttgaag 1980 ataaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgtaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggag caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatca aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca gatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagaagacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac 3300 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaaccacc actgacacgg caggacaatt 3420 cattatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacaccgga 3480 accgaaacct gcaccagaac ctacgccggc tccacagccc gcacccgaac cgactcctgc 3540 acctgtcccc aaaagattct ttgagtatat cggcactcca accggtacaa tctcaacaag 3600 agagaactct gacagtattt ctgtcagcaa gctcggcgga cagtcaatgc agtatataga 3660 gaatgagaag tgtgaaacaa aggtcattga ctccttctgg agcactaaca acaacgtgtc 3720 tgcacaggca gccttcgttt acccagtgcc agaaggatca tacagtgtga acatttcgtg 3780 cgaaggcttt caatccgttg accacatagg gggcaacgag gatggttatt ggattggttt 3840 aattgcctac tccaattcgt caggagacaa ttggggggtg ggcaactaca aagggtgcag 3900 tttcaagaac ttcttggcaa ccaatacttg gagaccaggc cataaggatc tcaagttgaa 3960 cgattgccag ttcacagatg gacaaatagt tgagagggat gccgtgatgt ctttccatgt 4020 ggaagcaaca ggtactgacg cctgtttcta tctcatggcc cccaaaacaa tgaaaactga 4080 caaatacaac tatgttgtct catatggggg gtacacaaac aaacggatgg aatttggtac 4140 catatctgtg acatgtgatg aatccgatgt tgaggcagaa cgcataacaa ggcacgctga 4200 aacacccata cgttccaaac acattcttgt gtctgaacag tatgagcgac ctttacccac 4260 cataatcaat caaggcttgt gtgatgtgca aactcccgag caagaacaaa cactggtgga 4320 tgaagaagac aaacagactg tttccacaga acctgatata gcactcatgg aatatgaagc 4380 tgcaacagct gaaattccgg atgctgaaga ggatgttttg ccctccaagg aacagctgtc 4440 ttctaaaccg gtggacacgt ccggcaacaa aatacctaag cccaaggaac ctgaagtact 4500 tggaacatac cagggacaga atatttaccc tgaagacgtg ccaccaatcg cgcggcaaaa 4560 gctacgcgaa gccgcaaatg caccctccac attactttac gagaaaactc ccaagaagag 4620 caacaatttc ttaactcgtt ttgtggaggc gaataggtcc cctacaactc cagctgcccc 4680 aacagtgtca actgtatcaa acatgacaag ggaacagctt gcggagtata ctagaattag 4740 gaaatccctt ggactcacag cagcgaagga atacagggcg caatttcagt gaaggtaaca 4800 ccactagcac aaatcggatc ctgggaaaca ggcagaacta cggttcataa gctcgggtag 4860 gccgtcaacc taccgccgta tcgtattgtg tttggccgat ggatgacctc cacgttatcg 4920 ccgtttgtat ttttgctcta actgtgctga cagggttagg cgcggtgatc ggctgttgtg 4980 ccggttgcct ccaccccccc ctttccctcc gcccttctgt ttaagcaaaa atctctcggt 5040 ctgtgcgaga gaaactcaaa aatatcgggg agctccggct cagtgagggg attaacgacc 5100 cccagtagag gctggtcttg gcggacttga ataacccgct ataggacgaa gtggtaaccg 5160 ccactgatca aatggtgaac atgcttctgt gttgtacact gccccggagc ccaccgggtt 5220 aacaaggcta ttccaccagc tcaatgaaat gagagtggag tggacggagt gggtgacttc 5280 gtgatgtaca cccgatcgtc aggattgaag acgttaaaac tcgacgacct agtgcaagtc 5340 gttaaactga ctagggtgga tacaccacac ccggcctaac ttgtaggcat acccacgata 5400 cgaaacgtgg gtctcttgga gccactacct gtgatgcaag gtagggtatg agtcttagca 5460 agctctgtgc caggagatgg acataaacca tagcaatcct gcaagtcatc atggcgaacc 5520 ataggtgaac cgtgccacgg gcctgtctac cgaaaggaaa agcagtatcc aacacagcaa 5580 tgtgttgggg gttacaccct tcggggtact cttaacgctg acactcgaaa gagcagttcg 5640 gcaaccc 5647 //