ID EF521827; SV 1; linear; genomic RNA; STD; VRL; 5778 BP. XX AC EF521827; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Cereal yellow dwarf virus - RPV isolate 005RPV, complete genome. XX KW . XX OS Cereal yellow dwarf virus RPV OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5778 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5778 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; b59ed71346f8fa1bf4950b020818d2df. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5778 FT /organism="Cereal yellow dwarf virus RPV" FT /host="Bromus secalinus" FT /isolate="005RPV" FT /serotype="RPV" FT /mol_type="genomic RNA" FT /country="USA:Missouri" FT /collected_by="Laura Sweets" FT /db_xref="taxon:2170100" FT primer_bind 1..25 FT /note="derived from viral specific primer used for RT-PCR" FT CDS 173..943 FT /codon_start=1 FT /product="P0" FT /note="ORF0; putative suppressor of gene silencing" FT /db_xref="GOA:A5A2P4" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:A5A2P4" FT /protein_id="ABP68671.1" FT /translation="MFIAQPCGRVLVFDVASRTPSFFTRYSVELSLRVLDPFFTRAVTD FT FRYTQNEIDLFCVSLGFLLPILLTGESYSWRGHLNLPLSYTELLVRWGLAVGYFPTFST FT DGDIRQNPELRIDLSTMSTRSFYEQFLLRYNTSGLAKAIVGQQECFQSGMESFKRFLHY FT RLTCFESCLPRPRWESPLAPGPYLDRAFEATLLGRMVGHNQLLFTGLSSDITRYYNELV FT VEGVPVAFWDAAGITLHHAGEEYFSNSYIQKILQ" FT CDS join(324..1700,1700..3559) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2P5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:A5A2P5" FT /protein_id="ABP68672.1" FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTSTSPFLTPNYLFDGGSQ FT WGTSLPSPLMVTFDRTQNSASTCPPCQPALSTSSSYSDITRVGWQKLSSDSKSAFKAAW FT SLLKDSYTTASRALKAAFHDLVGKVLWLLVLIWTGLLRQLFSAVWSVITNYSLPVCLLI FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPNTP FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFYSSRTSGSIPITEFR FT VIFESKIMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFTNKGRGAFKSKSGINWEDIEDESG FT NREGGSVRLNKRSNGKQGYRHPWRRRVPKEDCCSFFTEGTAAPRCIPTHQHNWEQNPYM FT SNCYCNIPGHGCAYWTIAARNHEQHNESAGPEDRYVEDREIDSGPSREPSSEETTRQAW FT LKETARSWQKFFADIYTWDVSTSKQEVPGFEQVGKFSPQYYPRPRGESEWGRKLCAEHP FT LLGEKTAGFGWPQVGASAELTSLRLQAARWLERSESAKVPSDAARENVINRTVQAYSNC FT KTNTPRCTRGELSWETFKIDFLEAIKSLQLDAGVGLPMITAGLPTHRGWVEDPDRLPVL FT AQLTFDRLLTMSKASLEARSPEQLVKENLCDPIRLFVKQEPHKQSKLDEGRYRLIMSVS FT LIDQLVARVLFQRQNKSEIALWSAIPSKPGFGLSTEDQVSKFMDVLAGNVGASPEEVCD FT NWRDLLVPTDCSGFDWSVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCL FT SDGTMLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKY FT KDLGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAA FT VSVLHELRHDRELCLKLQEWLISDVTTKLN" FT CDS 324..2288 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2P6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:A5A2P6" FT /protein_id="ABP68673.1" FT /translation="MKSIYFVCLLAFCCQFSSQENLTLGAVTSTSPFLTPNYLFDGGSQ FT WGTSLPSPLMVTFDRTQNSASTCPPCQPALSTSSSYSDITRVGWQKLSSDSKSAFKAAW FT SLLKDSYTTASRALKAAFHDLVGKVLWLLVLIWTGLLRQLFSAVWSVITNYSLPVCLLI FT SLGIITSWLWKACRWLFGTLPALLCITLVKNIFRILTFKRFFNEKTVSGYDSYSIPNTP FT PKRSVIMMRRQNKEHIGYANCIRLFDGRNAIVTVAHNIEEGCSFYSSRTSGSIPITEFR FT VIFESKIMDIAILVGPINWESILGCKGVHFTTADRLAECPAALYLLDSDGQWRSNSAKI FT CGHFDNFAQVLSNTKVGHSGAGYFYGKTLVGLHKGHPGKDFNFNLMAPLPGIPGLTSPQ FT YVVESDPPQGLVFPEEVTESIETAIKEATMYKNVFTNKGRGAFKSKSGINWEDIEDESG FT NGKAAASASTNAATANKVIATPGVAGSQKKTAVPSSPKVPQPPVASQPTSTTGNKTPTC FT PIATATSPDTVVPTGPSQQEIMNNIMNLLVQRIDMSKIEKSIVDQVASQALKKPRGKRG FT SKKRPAVGKSSSPTSTPGTYQHPNKKSQASNRLGNSPPSTTRAPAANQNGGENSVPNTL FT SWVRKLPVSDGPKSGHPLN" FT CDS 3745..5586 FT /codon_start=1 FT /transl_except=(pos:4357..4359,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2P7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:A5A2P7" FT /protein_id="ABP68674.1" FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRRR FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPKXVDAEPGPSPGPSPDPPP FT PPSPSPEPAPVKEERFIVYSGVAHTIISAQSTDDSIIVRDIPDQRFRYVENENFYWFQI FT AAQWYSNTNTKAVPMFVFPVPIGEWSVEISTEGYQATSSTTDPNKGRIDGLIAYDNSSE FT GWNIGAGSNVTITNNKADNSWKYGHPDLEINSCHFNQNQVLEKDGIISFHVKATEKEAN FT FFLVAPPVQKTSKYNYAVSYGAWTDRDMEFGLITVTLDEKRGSGSPTRKSLRAGHAGVT FT TTTDLVTLPEKENSGIETSETPSAPVTSSKAPLPTVSDSESEDDPLSAAPDVGFGGTRL FT LIDTDIKTIPDPDVADAFVNSAHVGNDPWAEVRAFKNAQKPVRGPSSVASGSITGGSLR FT GTLRPASEPARETPYERDENKTTRRQKSRFSFGGGRS" FT CDS 3745..4359 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:A5A2P8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2P8" FT /protein_id="ABP68675.1" FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRRR FT RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY FT HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK" FT CDS 3770..4231 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A1YH02" FT /protein_id="ABP68676.1" FT /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG FT EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV FT SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR" FT primer_bind complement(5756..5778) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5778 BP; 1470 A; 1539 C; 1367 G; 1402 T; 0 other; acaaagatta ccgaggggtg tcttcaacag ttcagacgct caagccttca acgctttcag 60 ccttcaaagc ttaagctcac tgttcccgcg ctgtttcgac gcttctagct cacagcccgt 120 gaaaccctct cctcccgctc tagcgatcaa cttgcgtgtt cgttattaac gcatgttcat 180 cgcccaacct tgcgggcgag ttcttgtgtt cgacgtcgcc tcccgcacgc catcgttctt 240 cactcgttat agtgttgaac tctcgctccg tgttctagac ccattcttca cgcgagcagt 300 aacagatttc cgatacaccc aaaatgaaat cgatttattt tgtgtgtctc ttggctttct 360 gttgccaatt ctcctcacag gagaatctta ctcttggcgc ggtcacctca acctccccct 420 ttcttacacc gaattacttg ttcgatgggg gctcgcagtg gggtacttcc ctaccttctc 480 cactgatggt gacattcgac agaacccaga actccgcatc gacctgtcca ccatgtcaac 540 ccgctctttc tacgagcagt tcctactcag atataacacg agtgggttgg caaaagctat 600 cgtcggacag caagagtgct ttcaaagcgg catggagtct tttaaaagat tcctacacta 660 ccgcctcacg tgctttgaaa gctgccttcc acgacctcgt tgggaaagtc ctttggctcc 720 tggtccttat ctggacaggg cttttgaggc aactcttctc ggccgtatgg tcggtcataa 780 ccaactactc tttaccggtt tgtcttctga tatcactagg tattataacg agttggttgt 840 ggaaggcgtg ccggtggctt tttgggacgc tgccggcatt actttgcatc acgctggtga 900 agaatatttt tcgaattctt acattcaaaa gattcttcaa tgagaaaact gtctcaggtt 960 atgacagtta ttcgattccc aacacccctc cgaagcggag cgtcatcatg atgcgacgcc 1020 aaaacaagga gcacattgga tatgcgaact gtattcgtct tttcgacgga cggaacgcaa 1080 ttgtcacagt tgctcacaat atagaggagg gttgctcttt ctattcctca cggactagtg 1140 gttccatccc aatcactgaa tttcgcgtta tctttgaaag caaaatcatg gatatcgcca 1200 ttctggtggg acctatcaat tgggaatcga ttctcggatg caaaggagtc cactttacca 1260 ccgctgaccg cttagcagaa tgcccagcgg ctctttatct tcttgatagc gatggtcagt 1320 ggcgctcaaa ctcggcgaag atttgtggcc atttcgacaa cttcgcccag gtcttgtcca 1380 acaccaaagt cggtcactcc ggtgctggct acttctatgg caagactctc gttggccttc 1440 acaaaggcca tcctggtaaa gactttaatt tcaatctgat ggctccttta ccaggaatac 1500 ctggcttgac ctccccgcag tacgttgtgg aatccgaccc ccctcagggt ttggttttcc 1560 ccgaagaagt cactgaatca atcgaaactg cgatcaagga ggcaacaatg tacaagaatg 1620 tcttcaccaa caaaggacgt ggcgctttta aatccaaaag cggcatcaac tgggaagata 1680 ttgaagacga gtcgggaaac gggaaggcgg cagcgtccgc ctcaacaaac gcagcaacgg 1740 caaacaaggt tatcgccacc cctggcgtcg ccgggtccca aaagaagact gctgttcctt 1800 cttcaccgaa ggtaccgcag ccccccgttg catcccaacc caccagcaca actgggaaca 1860 aaacccctac atgtccaatt gctactgcaa catccccgga cacggttgtg cctactggac 1920 catcgcagca agaaatcatg aacaacataa tgaatctgct ggtccagagg atcgatatgt 1980 cgaagatcga gaaatcgata gtggaccaag tcgcgagcca agctctgaag aaaccacgcg 2040 gcaagcgtgg ctcaaagaaa cggcccgcag ttggcaaaag ttcttcgccg acatctacac 2100 ctgggacgta tcaacatcca aacaagaagt cccaggcttc gaacaggttg ggaaattctc 2160 cccccagtac tacccgcgcc cccgcggcga atcagaatgg gggagaaaac tctgtgccga 2220 acaccctctc ttgggtgaga aaactgccgg tttcggatgg ccccaagtcg gggcatccgc 2280 tgaactgacg tctcttcggc tgcaagcagc tcgctggctc gagcgttccg agtcggctaa 2340 agttccatca gatgctgcta gagagaacgt aatcaatcgc accgtgcagg cttactcgaa 2400 ctgcaaaacc aacacgccta ggtgcacacg aggtgagtta agttgggaga cgtttaaaat 2460 tgacttcctt gaagcaatca aatcactcca acttgacgct ggcgtcggct tgccgatgat 2520 cactgcgggg ctccctaccc atcgagggtg ggttgaagac ccagatcgcc tgccagttct 2580 agctcagctt accttcgacc gcctacttac gatgtcgaaa gcaagcttgg aagctcgctc 2640 tccggagcaa ctcgtgaagg agaatctctg cgatcccatt cgtctctttg tgaaacaaga 2700 gccacacaaa cagagtaaac ttgatgaggg tcgttaccgc ctcatcatgt cagtctcctt 2760 gattgatcaa ttggtagccc gggttttgtt tcaaagacaa aacaaatccg aaatcgcgtt 2820 gtggagcgcg attccgtcaa aacccggttt tggattatcc accgaggacc aagtttcaaa 2880 attcatggat gtcctcgccg ggaacgttgg tgcgtctccc gaagaggtct gcgacaattg 2940 gcgcgacctg ttggttccta cggattgttc cggtttcgac tggtcagtct ccgactggat 3000 gctcgcggat gatatggagg tgagaaatcg cctcaccatc gactgcaacg agctcaccag 3060 acacctcagg gctgtttggc ttcaaggcat atcgaactca gttttatgcc tgtcggatgg 3120 aaccatgcta gctcaacgag tgcccggcgt gcagaaaagt ggttcgtata acacttcgtc 3180 tacaaactca cgcgtccggg tcatggctgc ctatcattgt ggcgcctcgt gggctatcgc 3240 tatgggcgat gacgctctgg aagctccaga tacagatttg tcaaaataca aggatctggg 3300 cttcaaagtc gaagttagtg gagagttgga attctgctcg cacattttca agacccctaa 3360 cctcgccatt ccggttaatg aaaacaagat gttgtaccgc ttgatccacg ggtacaatcc 3420 ggaatgtggc aattttgagg tagttcaaaa ctatctcaat gcagctgtct cagtgctgca 3480 tgagctccgc catgatcggg agctttgcct caaacttcaa gagtggttga tctctgacgt 3540 caccacaaaa ctaaactgag cacaaaacta gccggacaaa cgtaagttgc aagtgccgga 3600 agtcaagtct tacacataag cccaacattg attttcattt gttagcggga tttgcccttg 3660 gatttatatc ctcaatcccc atttcagttg ttggtgttta tctagtctac cttaaggttt 3720 cgacccacat tcgtgaaatt gttaatgagt acggtcgtcc ttagatccaa tggcaatggt 3780 tcgcgcagac gcagacagag agtcgctcgg cgaaggcctg ctgcaagaac gcagccagtg 3840 gttgtggtca cttccaacgg cccagccagg cgcagaagac gccgacgacc agttggtcct 3900 cggcgaggaa gaactccaag atctggagga ggaagccgtg gcgagacatt cgttttctca 3960 aaggattcac tcgcgggcaa ctcctctgga agtatcacct tcgggccgtc tctatcagag 4020 tatccggcat tccagaatgg agtactcaag gcctaccatg aatataagat cacaaattgt 4080 gtcttacagt tcgtcagcga ggcctcttcc acagcagccg gctccatctc ttatgagttg 4140 gacccccatt gcaaagcatc ttcactcgca tcaacgatca ataagttcac aatcaccaaa 4200 actggtgcgc ggagcttccc agcgaagatg atcaacgggt tagagtggca cccctcagat 4260 gaggatcagt tccgaatcct ttataaaggg aacggtgctt cttctgtggc tgggtctttt 4320 aagatcactc ttagagtcca gctacaaaac ccaaaatagg tagacgcgga acccggtccc 4380 agtccaggac catcacccga cccccccccc ccaccttcac catccccaga acctgctcct 4440 gttaaggagg aacgatttat cgtctattca ggggtggctc atacaatcat cagcgcccaa 4500 agcactgatg attctatcat agttagagat atcccagacc aacggtttag atacgttgag 4560 aacgaaaact tctattggtt tcagatagct gctcaatggt actcaaatac gaatacaaaa 4620 gcagttccga tgtttgtctt tccagtcccc atcggggaat ggtcagtcga aatatcaact 4680 gagggatatc aagctacgtc aagtaccacg gatcctaaca agggccgcat tgacgggctc 4740 atagcttatg ataactcaag tgaaggatgg aatatcgggg ctggaagtaa tgttaccatc 4800 acgaacaaca aagctgacaa tagttggaaa tacggtcatc ctgatctaga aatcaactct 4860 tgtcacttca accagaatca agttttggag aaagatggta ttatttcttt ccatgtcaaa 4920 gctacagaga aggaagctaa tttcttctta gtcgcccctc cagtccagaa aacctcgaag 4980 tataattacg ctgtctcata tggagcgtgg acggacaggg acatggaatt cgggttgatt 5040 acagtcacgt tagatgagaa acgtggctcg ggttccccca ctcgcaaaag cttacgcgct 5100 ggacacgcgg gagtaacgac caccactgat ttggtgacgt taccggagaa ggaaaactcc 5160 ggtatagaaa catctgaaac cccgtcagct ccggtcacca gctcaaaagc accgttgcca 5220 actgtctcgg actcggagtc agaagacgat ccgttatcag ccgcaccaga tgtaggcttt 5280 ggcggaactc gtcttttgat tgatactgat atcaaaacaa tacccgatcc ggacgttgct 5340 gatgccttcg tgaacagtgc tcatgtgggt aacgaccctt gggccgaggt ccgggcgttc 5400 aagaacgccc agaaacctgt tcgagggcca tcatcggttg ctagcggttc cattactgga 5460 ggatcgcttc gagggacact tcgcccggct tccgagcctg cgcgagaaac cccatacgag 5520 agagacgaaa acaaaacgac tcgtcgtcag aaatcacgtt tctcgtttgg tggtggtcgc 5580 tcctgaagtc tcaccgagca gagactataa acttgctcaa acgggcgaag gaaaatgccc 5640 taaatcaccc gtcgcaagac gttaaaggag gattaagacc ctcccccctt cctggttcaa 5700 caaccttgtt ccaggttagg ttcttgtctt taaaagaaga agctgtctta gagattccga 5760 tctcttggga gctttggt 5778 //