Dbfetch
ID EF501977; SV 1; circular; genomic DNA; STD; VRL; 2931 BP. XX AC EF501977; XX DT 08-MAY-2007 (Rel. 91, Created) DT 01-MAY-2014 (Rel. 120, Last updated, Version 2) XX DE Beet curly top virus isolate New Mexico, complete genome. XX KW . XX OS Beet curly top virus OC Viruses; Geminiviridae; Curtovirus. XX RN [1] RP 1-2931 RA Creamer R., Arguello-Astorga G.R., Ambriz-Granados S., Alpuche-Solis A.G.; RT "A curtovirus isolated from pepper in New Mexico is a new species from RT recombinant origin"; RL Unpublished. XX RN [2] RP 1-2931 RA Creamer R., Arguello-Astorga G.R., Ambriz-Granados S., Alpuche-Solis A.G.; RT ; RL Submitted (17-MAR-2007) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; 94b7212b72f853241967b8c8a82f4f86. XX FH Key Location/Qualifiers FH FT source 1..2931 FT /organism="Beet curly top virus" FT /host="Capsicum annuum" FT /isolate="New Mexico" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2005" FT /db_xref="taxon:10840" FT gene 254..520 FT /gene="r3" FT CDS 254..520 FT /codon_start=1 FT /gene="r3" FT /product="R3 protein" FT /note="V3" FT /db_xref="InterPro:IPR009997" FT /db_xref="UniProtKB/TrEMBL:A5HDX2" FT /protein_id="ABQ12759.1" FT /translation="MMVCIPDWLFLIFIFSIIIQAGTNVYGTLQSGSISRQLSKISCRC FT DELFVKLQQILYPRSASREQTPDHRRRRGLSAIPEGREEASEA" FT gene 330..650 FT /gene="r2" FT CDS 330..650 FT /codon_start=1 FT /gene="r2" FT /product="R2 protein" FT /note="V2" FT /db_xref="InterPro:IPR009931" FT /db_xref="UniProtKB/TrEMBL:A5HDX3" FT /protein_id="ABQ12760.1" FT /translation="MGPYRVDQFPDNYPRFLAAATSCLLSYNKSCIQGVRRENKPLTIE FT EGEAFLQFQKDVKKLLKRKCSFQVKKALYVEIYKRYVPDVSKEEGDVSKGVAQEKENDY FT HY" FT gene 550..1314 FT /gene="r1" FT CDS 550..1314 FT /codon_start=1 FT /gene="r1" FT /product="coat protein" FT /note="R1; V1" FT /db_xref="GOA:A5HDX4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5HDX4" FT /protein_id="ABQ12761.1" FT /translation="MSRFTKGTFQMSQKRKGTFQRAWPKKRKTTTTTRKYQWRRPLTRG FT RTLKLKMYDDMLGGGGVGTTISNNGMITMLNNYVQGIGDSQRANNITVTKHLKFDMALM FT GSSAFWETPNYMTQYHWIIVDKDVGSVFPTKLSTIFDIPDNGQAMPSTYRIRRDMNERF FT IVKKKWTTHLMSTGTGYGGKETYKAPSMPNYKKPMNMSVRNLNIKTIWKDSGGGKYEDV FT KENAIIYVVVNDNSDNTNMYATLFGNCRCYFY" FT gene complement(1348..1758) FT /gene="c3" FT CDS complement(1348..1758) FT /codon_start=1 FT /gene="c3" FT /product="replication enhancer protein" FT /note="REn; C3; L3" FT /db_xref="GOA:A5HDX5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5HDX5" FT /protein_id="ABQ12762.1" FT /translation="MNVIRDFRTEEPITLQQATNSIPVALVPNPLYLKLQDFFRSGPVY FT QLKVQIRFNHNLRKYLNLHKCWIDLTITGSHRTLTGDRFLRALKNQLDWVLERQSSISI FT NKIIRIFNYILYKRFNFVSSVIQKTSIAMKLY" FT gene complement(1445..1888) FT /gene="c2" FT CDS complement(1445..1888) FT /codon_start=1 FT /gene="c2" FT /product="silencing suppressor" FT /note="similar to TrAP of begomovirus; C2; L2" FT /db_xref="GOA:A5HDX6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5HDX6" FT /protein_id="ABQ12763.1" FT /translation="MKPLGPGHYKIQSSPNSQVLSLITIKKRPRKINLPCKCHFTIHHE FT CNQGFSHRGTHYAATSDEFHTRGFGSESIVPQTPGLLPIRAGLSTESPDKIQPQPPQIL FT ESSQVLDRFDDHWITQDIDWRPFFESLEEPTGLGTGASIFNLH" FT gene complement(1779..2843) FT /gene="c1" FT CDS complement(1779..2843) FT /codon_start=1 FT /gene="c1" FT /product="replication initiator protein" FT /note="rolling-circle replication initiation protein; Rep; FT C1; L1" FT /db_xref="GOA:A5HDX0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5HDX0" FT /protein_id="ABQ12764.1" FT /translation="MPFYKKAKNFFLTYPQCSVTKEDALEQLLAINTPSNKKYIRICRE FT LHENGEPHLHALIQFEGKVQIRNARYFDLQHRSTSKQFHCNIQGAKSSSDVKSYVSKDG FT DHIDWGEFQVDGRSARGGQQTANDAAAEALNAGNALEALQIIREKLPEKYIFQYHNLKP FT NLEAIFLPPPDIYQPPFPLSSFTRVPEIIQEWADSYFGLEPAARPYRYNSIIIEGDSRT FT GKTMWARCLGPHNYITGHLDFSLKTYSDNVLYNVIDDVDPNYLKMKHWKHLIGAQREWQ FT TNLKYGKPRVIKGGIPSIILCNPGEGSSYQDFLNKSENEALRSWTLQNSVFAKLTSPLF FT DNNQEASSQDQSSL" FT gene complement(2441..2704) FT /gene="c4" FT CDS complement(2441..2704) FT /codon_start=1 FT /gene="c4" FT /product="C4" FT /note="predicted protein with unknown function; L4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5HDX1" FT /protein_id="ABQ12765.1" FT /translation="MKMGNHICMPLFNSKEKSRSVMPVTSICNIEVPANNSTAIFRELN FT PVPTSSPTSQRTEITSTGVNFRSMEDLHAEVNRRLMMLQQRP" XX SQ Sequence 2931 BP; 849 A; 523 C; 649 G; 910 T; 0 other; accgggatgg cccccggaaa aattggtccc caattataaa acgacacgtg taatcgcact 60 atgtgagatg tgaaaggttt aggcgggaaa cttctcttag aagttttcaa ttaaactttg 120 gactggtcaa agttgttgcc gacaaatctt tattttttga aaataaagtt gctttcacat 180 tacaaacttg ttgtccaagt ttgttaggtt ctagtattta aatacctaca tgtacccgta 240 ttgttacata taaatgatgg tctgtatacc agactggtta tttctaatct ttatctttag 300 cataataatt caggctggta cgaacgttta tgggacctta cagagtggat caatttccag 360 acaattatcc aagatttctt gccgctgcga cgagttgttt gttaagttac aacaaatctt 420 gtatccaagg agtgcgtcga gagaacaaac ccctgaccat agaagaaggc gaggcctttc 480 tgcaattcca gaaggacgtg aagaagcttc tgaagcgtaa gtgctcattt caagtgaaga 540 aggcattgta tgtcgagatt tacaaaaggt acgttccaga tgtctcaaaa gaggaagggg 600 acgtttcaaa gggcgtggcc caagaaaagg aaaacgacta ccactactag aaagtatcag 660 tggagacgtc ctctcacgag gggtaggact ttgaagttga agatgtatga tgacatgctt 720 ggaggtggag gtgtcggtac taccattagt aataatggaa tgattactat gctcaacaat 780 tacgttcaag gaattggtga tagtcagaga gccaacaata taaccgttac taagcatttg 840 aagtttgata tggcccttat gggcagttct gcgttttggg agactccaaa ttatatgacc 900 caatatcatt ggatcatcgt tgataaggat gttgggtctg tttttcctac caagttgtct 960 actatatttg atattccaga taatggtcag gcgatgccgt ctacgtacag gatccggcgt 1020 gatatgaatg agaggtttat tgtgaagaag aaatggacaa ctcatctgat gtctactggt 1080 actggttatg gaggaaagga gacttacaag gctccttcta tgcctaatta caagaagccg 1140 atgaatatga gtgttcgtaa cctgaatatc aagactatct ggaaagatag tggtggtgga 1200 aagtatgaag atgtgaagga aaatgctatc atatatgttg ttgtaaacga taatagtgat 1260 aacacgaata tgtatgctac tttgtttggc aactgtcgtt gctacttcta ttaataaaat 1320 catattttat ttaatattga aattacatta gtacaatttc attgcaatac ttgttttttg 1380 gattacacta ctgacgaaat tgaaacgctt atacaatata taattgaaaa tacgaataat 1440 tttattaatg gagattgaag attgacgctc cagtacccaa tccagttggt tcttcaaggc 1500 tctcaaaaaa cggtctccag tcaatgtcct gtgtgatcca gtgatcgtca aatctatcca 1560 gcacttgtga agattcaagt atttgcggag gttgtggttg aatcttatct ggactttcag 1620 ttgatagacc ggcccggatc ggaagaagtc ctggagtttg aggtacaatg gattcggaac 1680 caaagccacg ggtatggaat tcgtcgcttg ttgcagcgta atgggttcct ctgtgcgaaa 1740 atccctgatt acattcatga tgtattgtga aatgacactt acaaggaaga ttgatcttgc 1800 gaggacgctt cttgattgtt atcaaagaga ggacttgtga gtttggcgaa gactgaattt 1860 tgtaatgtcc aggacctaag ggcttcattt tctgatttat tgaggaagtc ctggtaagag 1920 cttccttccc ctggattgca taatataata ctgggaatac caccttttat gacacgtggt 1980 tttccatact ttaagtttgt ctgccactct ctttgtgcgc ctataaggtg cttccaatgc 2040 ttcatcttta agtaattggg atctacgtca tcaatgacgt tatacaaaac attatcacta 2100 taagttttta aactaaaatc taaatgccca gtaatataat tatgtggacc taaacacctg 2160 gcccacattg ttttaccagt tcttgaatca ccctctatga ttatactatt atatctatac 2220 ggccgcgcag cgggctctaa accaaaataa gaatcggccc actcttgaat aatttctgga 2280 actcgagtga aagaagaaag aggaaaggga ggttgataaa tatctggagg aggaagaaaa 2340 atagcctcta agttaggttt gaggttgtga tactgaaaaa tatatttttc tgggagtttc 2400 tcccttatta tctgcagagc ttctaatgca ttacctgcat ttaaggcctc tgctgcagca 2460 tcattagccg tctgttgacc tccgcgtgca gatcttccat cgacctgaaa ttcaccccag 2520 tcgatgtgat ctccgtcctt tgagacgtag gacttgacgt cggaactgga tttagctccc 2580 tgaatattgc agtggaattg tttgctggta cttcgatgtt gcagatcgaa gtaacgggca 2640 ttacggatct ggacttttcc ttcgaattga ataagggcat gcagatgtgg ttccccattt 2700 tcatgtagtt ctctgcagat acgaatatat tttttattcg aaggtgtatt tatagcgagg 2760 agctgctcta aggcgtcttc tttggttact gaacattgag ggtatgtaag gaaaaaattt 2820 ttggcttttt tgtaaaaagg catattgaat cgggctctct tcaaatcccc tatcaattgg 2880 gtgctatggg tgctcttaat acccaccaag gggccatccg caataattat t 2931 //