Dbfetch
ID EF501976; SV 1; circular; genomic DNA; STD; VRL; 2615 BP. XX AC EF501976; XX DT 08-MAY-2007 (Rel. 91, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Tomato golden mottle virus isolate Rioverde SLP2 segment A, complete DE sequence. XX KW . XX OS Tomato golden mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2615 RX DOI; 10.1094/PDIS-91-11-1513B. RX AGRICOLA; IND44034847. RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Ambriz-Granados S., RA Alpuche-Solis A.G., Monreal-Vargas C.T.; RT "First Report of Tomato golden mottle virus on Lycopersicon esculentum and RT Solanum rostratum in Mexico"; RL Plant Dis. 91(11):1513-1513(2007). XX RN [2] RP 1-2615 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Gregorio-Jorge J., RA Ambriz-Granados S., Alpuche-Solis A.G., Monreal-Vargas C.T.; RT "First report of Tomato golden mottle virus in Mexico"; RL Unpublished. XX RN [3] RP 1-2615 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Gregorio-Jorge J., RA Ambriz-Granados S., Alpuche-Solis A.G., Monreal-Vargas C.T.; RT ; RL Submitted (17-MAR-2007) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la presa San Jose 2055, San Luis Potosi, SLP RL 78231, Mexico XX DR MD5; e09b3c066aad91812e96e4753553ee6c. XX FH Key Location/Qualifiers FH FT source 1..2615 FT /organism="Tomato golden mottle virus" FT /segment="A" FT /host="Bemisia tabaci (whiteflies)" FT /isolate="Rioverde SLP2" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="2005" FT /db_xref="taxon:223342" FT gene 198..953 FT /gene="AV1" FT CDS 198..953 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP; capsid protein; AR1" FT /db_xref="GOA:A5HDW9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5HDW9" FT /protein_id="ABQ12754.1" FT /translation="MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV FT KNDLRDRYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHAFNPVYATLKIRIYFYDSISN" FT gene complement(950..1348) FT /gene="AC3" FT CDS complement(950..1348) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn; AC3; AL3" FT /db_xref="GOA:Q19LG1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q19LG1" FT /protein_id="ABQ12755.1" FT /translation="MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIY FT HVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNN FT VIRAVRFATDKPYVNHVLERHSIKFKIY" FT gene complement(1089..1484) FT /gene="AC2" FT CDS complement(1089..1484) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="transcription activator of virus late genes; FT silencing suppressor; TrAP; AC2; AL2" FT /db_xref="GOA:Q19LG0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q19LG0" FT /protein_id="ABQ12756.1" FT /translation="MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCAN FT NGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESF FT GSTQGIPKFPSLDDIPDGFWDDLFESV" FT gene complement(1441..2481) FT /gene="AC1" FT CDS complement(1441..2481) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="rolling-circle replication initiation protein; Rep; FT AC1; AL1" FT /db_xref="GOA:A5HDW7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5HDW7" FT /protein_id="ABQ12757.1" FT /translation="MPLPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIK FT ICRELHENGEPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNATGVQQALQILKEEQPRDFVKDFH FT NLKGNLEKIFAKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGAAARTLRPISIIIEG FT DSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQ FT TDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLD FT APLYQT" FT gene complement(2031..2324) FT /gene="AC4" FT CDS complement(2031..2324) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="predicted protein with unknown function; AC4; AL4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5HDW8" FT /protein_id="ABQ12758.1" FT /translation="MGNLISMPLSNLKEKSRSRMNDSSIWYPQPGQHTSIRTFRELNLV FT PMSNHISTKMEIPSNGENFKSTADQLEEVSRLQTTHMPRRLTQLECNRHSKF" XX SQ Sequence 2615 BP; 686 A; 527 C; 604 G; 798 T; 0 other; accggatggc cgcgcgattt tttacccgac ccgggcccat taatgaaata ttctcgggtc 60 atgcaataat gataaatatg actgtccaat cacatgacgt ctgctgggtc taattagtgg 120 tccttggtag acaagaatgg acccggatat ctataaatat taaagtgaat cccactattg 180 tatatcttta atttgaaatg ccaaagcgcg atgctccgtg gcgattgatg ggggggacct 240 caaaagtgag ccggtcctcc aaccagtctc ccaggactgg tactgggcct aaatttgaca 300 aggcccatgc ctgggttaac aggcctatgt acaggaagcc caggatatat cgggcttgga 360 gaacacccga cgttcctaga ggctgtgaag gcccatgtaa ggtccagtca tttgaacagc 420 gtcatgatat ctcccatgtt ggtaaggtga tgtgcatatc ggacgtcacc cgtggcaacg 480 gtatcactca tcgcgttggt aagcgttttt gtgttaagtc cgtgtatata ttaggcaaga 540 tctggatgga tgacaacatc aagttgaaga accacacgaa cagtgtcatg ttctggttgg 600 tcagggatag gagaccatat ggtactccta tggattttgg ccaagtgttc aacatgtacg 660 acaatgagcc tagtactgct actgtgaaga acgatcttcg tgatcgttat caggtagtcc 720 acagatttta tgctaaggtc actggtggtc agtatgccag caatgagcag gctcttgtca 780 gacgattctg gaaggtgaac aaccatgtgg tgtacaacca tcaggaagcc gggaagtatg 840 agaaccacac agaaaatgct ctgttattgt acatggcatg tacacatgct tttaatcctg 900 tatatgcaac tttgaaaatt cggatctatt tttatgattc gataagtaat taataaattt 960 tgaattttat tgaatgtctt tctaatacat gatttacata tggtttatct gttgcgaagc 1020 gaacagcacg aatgacatta ttaagtgaaa taacacctaa tctatctaag tacaataaaa 1080 ctaaactcct aaaccgattc aaataagtcg tcccagaagc cgtcagggat gtcgtccaga 1140 cttggaaatt taggtatgcc ttgtgtagat ccaaagcttt cctcacgttg tggttgaacc 1200 tgatctgcac gtggtatatc ctgatgttcg tgtataggag atcctctacg ttgtatatct 1260 tgaaatagag gggatttgga acatcccaaa taaaaacgcc attccctgct tgacgagcag 1320 tgatgggttc ccctgtgcgt gaatccattg ttggcgcagt tgatgtgcac gtatattgta 1380 cggccgcagt ccaagtctat acgttttcga cgtattccct ttcgttttgc aatcctgtgt 1440 ttaggtttga tagagggggg cgtcgaggaa gacgaattct gcattgtgat gtgtccacgc 1500 cttgagatgt gagttttcct gtttgtcgag gtagtattta tagctagccc cctcaccagg 1560 attgcatagc acgattgatg gaatgccacc tttaatttga atgggtttcc cgtatttaca 1620 gttggtctgc cagtctgtct gggccccaat gagctctttc cagtgtttca tctttagata 1680 gtgcggtggt acgtcatcaa tgacgttgta cataacatcg tttgagtaaa ctctagaatt 1740 gaaatctaga tgaccactca aataattatg aattcctaat gaacgagccc acattgtttt 1800 tccagttctt gaatcacctt cgatgatgat actgataggt cttaatgtcc gcgcagcggc 1860 accatttcca aaataatcat cagcccatga ctgtaactcc tccggcacgt tgttaaatga 1920 ggagagtgaa aatggaggaa cccatggttc tggagccttt gcaaatatct tctcaaggtt 1980 acccttgaga ttgtgaaaat ctttaacaaa atccctaggt tgttcttcct ttaaaatttg 2040 gagtgcctgt tgcactccag ttgcgttaag cgccttggca tatgagtcgt ttgcagtctg 2100 ctgacctcct ctagctgatc tgccgtcgat ttgaaattct ccccattcga gggtatctcc 2160 atctttgtcg atatatgatt tgacatcgga actagattta gctccctgaa tgttcggatg 2220 gaagtgtgct gacctggttg gggataccag atcgaactgt cgttcattcg tgatctggac 2280 ttttccttca agttggacaa gggcatggag atgaggttcc ccattctcgt gaagctctct 2340 gcaaatcttg atatatcgtt tattcgaagt tagttgtatt gattgtaatt gctctaatgc 2400 ttcatcttta gtaagagagc ataatgggta tgttaggaat atattttttg cttgaagtct 2460 gaaacgtctg ggtagtggca tatttgtaat taaagggtgt actccaattg agctcctctc 2520 aaacttggtg aaacaattgg agtattggag tacaatttat actaaaacct cagatagcgc 2580 ttggagacac ttggcggcca tccgtttata atatt 2615 //