Dbfetch
ID EF457931; SV 1; linear; genomic DNA; STD; VRL; 1527 BP. XX AC EF457931; XX DT 23-MAY-2007 (Rel. 91, Created) DT 23-MAY-2007 (Rel. 91, Last updated, Version 1) XX DE Tomato yellow leaf curl Thailand virus isolate 65-1 replication-associated DE protein (C1) gene, partial cds; C4 protein (C4) and pre-coat protein (V2) DE genes, complete cds; and coat protein (V1) gene, partial cds. XX KW . XX OS Tomato yellow leaf curl Thailand virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1527 RA Tsai W.S., Ito H., Kimbara J., Hosoi K., Shih S.L., Lee L.M., Green S.K.; RT "First report of Tomato yellow leaf curl Thailand virus in Taiwan"; RL Unpublished. XX RN [2] RP 1-1527 RA Tsai W.S., Ito H., Kimbara J., Hosoi K., Shih S.L., Lee L.M., Green S.K.; RT ; RL Submitted (26-FEB-2007) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Tainan, RL Taiwan 74199, ROC XX DR MD5; e3875b4b4ba682e3ac7107da7c03590d. XX FH Key Location/Qualifiers FH FT source 1..1527 FT /organism="Tomato yellow leaf curl Thailand virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="65-1" FT /mol_type="genomic DNA" FT /country="Taiwan:Tainan" FT /collection_date="2007" FT /db_xref="taxon:85752" FT gene complement(<1..702) FT /gene="C1" FT CDS complement(<1..702) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:A5JHA3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JHA3" FT /protein_id="ABQ41332.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQALETPINKLFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALTILREKAPKDFALQFH FT NLNSNLDRIFTPPMEEYISPFSSSSFNQVPEELKEWACNNVLSAAARPLRPIGIVIEGD FT SRTGKTMWACRC" FT gene complement(252..551) FT /gene="C4" FT CDS complement(252..551) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5JH97" FT /protein_id="ABQ41333.1" FT /translation="MKMGLLTCMSSSNSKENSNVKIKDSSISHPQPGQHISIRTFRELK FT AQQMLKHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSLY" FT gene 933..1319 FT /gene="V2" FT CDS 933..1319 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:A5JH98" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5JH98" FT /protein_id="ABQ41334.1" FT /translation="MVPYLRLSHQVSAKFKMWDPLLNEFPENVHGFRCMLAVKYLQAVE FT KTYSPDTLGFDLIRDLIGVIRAKNYVEASSRYSHFHARLESTSPSELRQPIQQPCCCPH FT CPRHKRADMEEPTCIQKAQVLQNV" FT gene 1141..>1527 FT /gene="V1" FT CDS 1141..>1527 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A5JHA6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5JHA6" FT /protein_id="ABQ41335.1" FT /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWK FT NRPAYRKPRFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDDNINCR" XX SQ Sequence 1527 BP; 403 A; 316 C; 348 G; 460 T; 0 other; gcatctgcag gcccacatgg ttttccctgt tctgctatca ccctcaatta ctataccaat 60 gggtctcaat ggccgcgcag cggcactgag aacattatta caagcccatt ctttaagttc 120 ttctggaact tgattaaaag aagaagaaga aaatggagaa atatattcct ccattggagg 180 agtaaaaatc ctatctaaat tagaatttaa attatgaaat tgcaaagcaa aatctttagg 240 ggctttttcc ctcagtatag tgagggccga agctttggac cctgaattga ttgcctcggc 300 atatgcgtcg ttggcagatt ggcaacctcc tctagccgat cttccatcga tctggaaaat 360 tccatgatca agcacgtctc cgtctttttc catgtatgtt ttaacatctg ttgagctttt 420 agctccctga atgttcggat ggaaatgtgc tgacctggtt ggggatgtga gatcgaagaa 480 tctttgattt ttacattgga attttccttc gaattggatg aggacatgca ggtgaggagt 540 cccatcttca tggagttccc tgcagattct gatgaataat ttattaattg gtgtttctag 600 tgcttgaatt tgggaaagtg cttcctcttt agtgagagaa caatgtgggt atgtcaggaa 660 atagttcttg gcatttattc tgaatttatt aggaggagcc attgactggt caatcggtgt 720 ctctcaaact tggctatgca atcggtgtct ggggtcttat ttatacctgg acaccaaatg 780 gcataattgt aatttagtga atgtgattta aaattcaaaa tccaaaagcg gccatccgta 840 taatattacc ggatggccgc gatttttttg aagtggtccc cttgatgtga tgtttcatcc 900 aattaaaacg ctcggccaaa gcttaattat ttatggtccc ctatttaaga cttagtcacc 960 aagtttcggc gaaattcaaa atgtgggatc cactcctaaa cgaatttccg gaaaacgtcc 1020 acggtttccg ttgtatgtta gcggttaagt atctgcaagc ggtcgagaag acgtattcac 1080 ctgataccct agggtttgat ctcatccgtg atctcatcgg tgtaattcgt gcgaagaact 1140 atgtcgaagc gtccagcaga tattctcatt tccacgcccg tctcgaaagt acgtcgccgt 1200 ctgaacttcg acagcccata caacagccgt gctgctgtcc ccactgtccg cgtcacaaaa 1260 gggcagatat ggaagaaccg acctgcatac agaaagccca ggttctacag aatgtataga 1320 agtcctgatg tccctaaggg atgtgagggt ccatgtaaag tgcaatcttt cgatgcgaag 1380 aacgacattg gtcatatggg caaggtaatc tgtctgtctg acgttacccg tggtattggg 1440 cttactcatc gagttggcaa gcgtttctgt gtcaagtcac tttattttgt cgggaagatc 1500 tggatggacg ataacatcaa ctgcaga 1527 //