ID EF456742; SV 3; circular; genomic DNA; STD; VRL; 2806 BP. XX AC EF456742; XX DT 02-JUL-2008 (Rel. 96, Created) DT 18-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Sweet potato leaf curl Canary virus isolate ES:CI:BG4:02, complete genome. XX KW . XX OS Sweet potato leaf curl Canary virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2806 RX DOI; 10.1099/vir.0.012542-0. RX PUBMED; 19515824. RA Lozano G., Trenado H.P., Valverde R.A., Navas-Castillo J.; RT "Novel begomovirus species of recombinant nature in sweet potato (Ipomoea RT batatas) and Ipomoea indica: taxonomic and phylogenetic implications"; RL J. Gen. Virol. 90(Pt 10):2550-2562(2009). XX RN [2] RP 1-2806 RA Lozano G., Navas-Castillo J.; RT ; RL Submitted (26-FEB-2007) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora, RL Consejo Superior de Investigaciones Cientificas, Algarrobo-Costa 29750, RL Spain XX RN [3] RC Sequence update by submitter RP 1-2806 RA Lozano G., Navas-Castillo J.; RT ; RL Submitted (16-JUN-2009) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora, RL Consejo Superior de Investigaciones Cientificas, Algarrobo-Costa 29750, RL Spain XX DR MD5; bee967b0dd9722e26a128a01cae5bb81. XX CC On Jun 17, 2009 this sequence version replaced gi:239912479. XX FH Key Location/Qualifiers FH FT source 1..2806 FT /organism="Sweet potato leaf curl Canary virus" FT /host="Ipomoea batatas" FT /isolate="ES:CI:BG4:02" FT /mol_type="genomic DNA" FT /country="Spain" FT /db_xref="taxon:652718" FT gene 42..440 FT /gene="V2" FT CDS 42..440 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /note="MP" FT /db_xref="GOA:I6LI30" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:I6LI30" FT /protein_id="ABS83256.1" FT /translation="MMTLLYKDQSGCRAWRPSMAELWDPLQNPLPDTLYGFRCMLSVKY FT LQGILKKYEPGTLGFELRSELIRIFRVRQYDRANSRFAEISSLWGETGKTEAELRDSYR FT ALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 265..1029 FT /gene="V1" FT CDS 265..1029 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /note="capsid protein" FT /db_xref="GOA:I6LI31" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LI31" FT /protein_id="ABS83257.1" FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKIDHTNIITYWLICDRRPNKDPLNFVQVFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHDINPVYQTLRCRAYFYDSHNN" FT CDS complement(1045..1641) FT /codon_start=1 FT /product="C2/C3 fusion protein" FT /db_xref="GOA:I6LI33" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LI33" FT /protein_id="ABS83259.2" FT /translation="MSNLPSGIKRKCPIQEPLHAEAKKAKRKAPEPRTRIVWKGCGCSA FT FITQPASTSMDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVHESTQGRTII FT KFQMRVNYRERIALGFHKIFLQFRIVTTRLTGAFHSWTGILERLKWRICNELANIGFFS FT LINLVYVIRHLPESVRWIEEVDTIDCNDDVKALLY" FT gene complement(1550..2644) FT /gene="C1" FT CDS complement(1550..2644) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:I6LI32" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LI32" FT /protein_id="ABS83258.1" FT /translation="MPRKQGFRVQAKNIFLTYPKCSLSKEQALEQLRATHCPSDKLFIR FT VSQEKHQDGSLHLHVLIQFKGKAEFKNPRHFDLHHPHNSSQFHPNFQAAKSSSDVKSYI FT EKDGDYLDWGESQIDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYIFQYH FT NLVSNLDRIFSPPPAVYCSPFSSSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLRLDKPEQGALKNWATANAIFCDVQSPF FT WNQEEVSHSGATARRGEEGQEESS" FT gene complement(2230..2487) FT /gene="C4" FT CDS complement(2230..2487) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LI34" FT /protein_id="ABS83261.1" FT /translation="MGHCISMFSSSSRGKQSSKTHDISTYIIHITPPNSIQISRQLSPP FT RMSSHTSRRTETTSTGVNPRSTADLLEEVSRLLTTLPQRH" XX SQ Sequence 2806 BP; 727 A; 594 C; 669 G; 816 T; 0 other; accggtgccc gctgcgcccc cttttgtggg ccccacaaag aatgatgaca ttgctttata 60 aggaccaatc aggttgccgt gcttggcgcc caagtatggc tgagttgtgg gacccacttc 120 agaacccgct cccagatact ttatacggtt ttaggtgtat gctttctgta aaatacctgc 180 aaggtatttt gaagaaatac gagccaggaa ccttagggtt tgagctccgt tcggaattaa 240 tccgtatatt cagggtcagg cagtatgaca gggcgaattc ccgtttcgcg gagatttcat 300 ccctatgggg ggagaccggt aagacggagg ctgaacttcg agacagctat cgtgccttac 360 actgggaatg ctgtcccaat tgctgcccga agctatgtcc cggtttcaag aggcgtccgg 420 atgaagagaa agaggggtga ccgcatcccg aagggttgtg tgggtccctg taaggtccag 480 gactatgagt tcaagatgga cgttccccac acgggaacgt ttgtctgtgt ctcggatttt 540 acaaggggga ctgggcttac ccatcgcctg ggtaagcgtg tttgtgttaa gtcaatgggt 600 atagatggga aggtctggat ggatgacaat gtggccaaga tagatcacac caatatcatc 660 acgtattggt tgatctgtga cagaaggccc aataaggatc cgcttaattt tgtacaggtt 720 ttcaccatgt acgacaacga gccaactact gctaagatcc gaatggatct gagggataga 780 atgcaggtct tgaagaagtt ctctgttaca gtttcaggag gcccctacag ccacaaggaa 840 caggctttgg ttagaaagtt ttttaagggt ttgtataatc atgtaactta caatcacaag 900 gaagaagcta aatacgagaa tcacttagag aatgccctta tgctgtatag tgctagtagt 960 catgatatta atcctgtata tcagaccctg cgttgcaggg cttatttcta tgattcacac 1020 aataattaat aaaattttat tttattaata cagtaatgct tttacatcat cattacaatc 1080 tatagtatct acttcttcta tccatctaac tgattcaggc agatgcctga ttacataaac 1140 taaattaata agagaaaaaa aacctatatt agctaattca ttacagatac gccatttaag 1200 gcgttccaaa ataccagtcc aactgtgaaa agcaccagtt agccgggtcg tcactatcct 1260 gaattgcagg aatattttgt ggaatcccag agctattctc tccctgtagt tgaccctcat 1320 ctggaatttg atgattgttc tcccctgtgt gctctcgtgg acatacataa ttctgagatg 1380 gaatggtgca gtccgaccca cagacatggg gttggtgtcg aattctagtg ctctcgtagt 1440 ctgagcatga cttagtgatt cccctgtgcg tgaatccatg ctggtacttg caggttgggt 1500 gatgaaggct gagcagccgc agcccttcca cactatcctt gtccttggtt caggagcttt 1560 cctcttggcc ttcttcgcct ctgcgtgcag tggctcctga atgggacact tcctcttgat 1620 tccagaaggg agattggaca tcgcagaata tagcgtttgc tgttgcccaa ttcttgagtg 1680 ctccttgctc tggtttgtcc aaccggagtt taaatgaaga gccctctcct ggattgcaga 1740 ggaagatagt gggaattcca cctttaattt gaactggctt cccgtattta cagtttgatt 1800 gccagtcctt ctgggccccc atgaattcct taaagtgctt taggtattgg gggttgacgt 1860 catcaatgac gttataccaa gcactgttgc tgtatacttt tgggcttaga tctaaatgcc 1920 cacacaaata attgtgaggg cccaaagacc tggcccacac tgttttgcct attctgcttg 1980 ggccttcaat aacaattgat ataggtctat ccggccgcgc agcggaatcc atgacatttt 2040 cagcggccca atcgctgata atgtcaggaa cattattgaa agaagaagaa gaaaaagggg 2100 aacaatatac agcaggagga ggagaaaaaa tcctatctaa atttgaaact aaattatgat 2160 attgaaaaat atatttttca gggagtttct cccttattat ttgtaacgca gcttctttag 2220 aacctgcgtt taatgcctct gcggcagcgt cgttagcagt ctgctgacct cctctagcag 2280 atctgccgtc gatctgggat tcaccccagt cgaggtagtc tccgtccttc tcgatgtatg 2340 acttgacatc cgaggaggac ttagctgcct ggaaatttgg atggaattgg gaggagttat 2400 gtggatgatg taggtcgaaa tgtcgtgggt ttttgaactc tgctttcccc ttgaactgga 2460 tgagaacatg gagatgcaat gacccatctt ggtgtttctc ttggctaact ctgataaaca 2520 gtttatccga cgggcaatgg gtggccctta attgctcaag cgcttgctct ttagataaag 2580 aacatttggg gtatgttaag aaaatatttt tggcttggac tctaaaccct tgcttacgtg 2640 gcattttgaa tcggaggctc tcaaagctct acggaattgg aggatttgga ggactatata 2700 tagtgagcct ccaaatgaca ttttggtaat ttagaagatc cttttacctt taattcaaat 2760 tccgacatgt ctgggaccac caaaaggcgg gcaccgtatt aatatt 2806 //