ID EF450316; SV 1; circular; genomic DNA; STD; VRL; 2738 BP. XX AC EF450316; XX DT 27-MAR-2007 (Rel. 91, Created) DT 28-NOV-2019 (Rel. 143, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus 5 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus 5 OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2738 RA Monger W.A., Mumford R., Kelly P.; RT "Tomato leaf curl virus in cucumber from Bangladesh"; RL Unpublished. XX RN [2] RP 1-2738 RA Monger W.A., Mumford R., Kelly P.; RT ; RL Submitted (22-FEB-2007) to the INSDC. RL Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK XX DR MD5; e18c58eb2399a7d9e50aa696a4a22aa2. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC5127021; 27834936. XX FH Key Location/Qualifiers FH FT source 1..2738 FT /organism="Tomato leaf curl New Delhi virus 5" FT /segment="DNA-A" FT /host="cucumber" FT /mol_type="genomic DNA" FT /country="Bangladesh" FT /isolation_source="leaf" FT /db_xref="taxon:2560812" FT gene 118..447 FT /gene="AV2" FT CDS 118..447 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:A4L726" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4L726" FT /protein_id="ABO40821.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQ FT KAQNV" FT gene 278..1048 FT /gene="AV1" FT CDS 278..1048 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A4L727" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A4L727" FT /protein_id="ABO40822.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(308..793) FT /gene="AC5" FT CDS complement(308..793) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A4L728" FT /protein_id="ABO40823.1" FT /translation="MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFS FT LYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTF FT TSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS" FT gene complement(1045..1455) FT /gene="AC3" FT CDS complement(1045..1455) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:A4L729" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A4L729" FT /protein_id="ABO40824.1" FT /translation="MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNH FT DIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGI FT SNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY" FT gene complement(1190..1594) FT /gene="AC2" FT CDS complement(1190..1594) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:A4L730" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A4L730" FT /protein_id="ABO40825.1" FT /translation="MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQP FT AESSGASQVFSNFPNLDGLTPSDWDFLEGI" FT gene complement(1497..2582) FT /gene="AC1" FT CDS complement(1497..2582) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:A4L731" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A4L731" FT /protein_id="ABO40826.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIK FT ICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPL FT YSGRENISPPEEEEEHTQEAS" FT gene complement(2249..2425) FT /gene="AC4" FT CDS complement(2249..2425) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4L732" FT /protein_id="ABO40827.1" FT /translation="MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRR FT PTSRHISTKTETC" XX SQ Sequence 2738 BP; 732 A; 563 C; 641 G; 802 T; 0 other; accgaatggc cgcgaaaatt ttggtgggcc ctcaaccaac gaaatgcaag ctacatggct 60 tatttagtgc ggggggacca ttaaatagcc ttgctgacga agtttaggtc cacaaacatg 120 tgggatccat tattgcacga atttcctgaa agcgtgcatg gtctaaggtg catgctagct 180 gtaaaatatc ttcaagagat agagaagaac tattccccag acacagtggg ctacgatctt 240 gtccgagatc taattttagt agttcgagca aagaactatg tcgaagcgac cagcagatat 300 catcatttca actcccgcat cgaaggtacg ccgacgtctc aacttcgaca gcccttatgg 360 agctcgtgca gttgtcccca ttgcccgcgt cacaaaagca aaggcgtgga caaacaggcc 420 gatgaacaga aagcccagaa tgtatagaat gtacagaagc cccgacgtgc caaggggatg 480 tgaaggtcct tgtaaggtgc agtcttttga atctaggcac gatgtgtctc atattggcaa 540 agtcatgtgt gtcagtgacg ttacccgagg aaccggactg actcatcgcg tggggaagcg 600 tttctgtgtg aaatctgtgt atgtattggg gaagatatgg atggatgaaa acataaagac 660 taaaaaccac acgaacagtg tgatgttttt cttggttcgt gaccgtcgtc ctacgggatc 720 gccacaggat tttggtgaag tgttcaacat gtttgacaat gaaccgagca ccgcaacggt 780 gaagaacatg catcgtgatc gttatcaagt gttaaggaaa tggcatgcga ctgtgactgg 840 agggacttat gcatcgaagg agcaagcatt agttaggaag tttgttaggg ttaataatta 900 tgtcgtttat aatcaacaag aggccggaaa gtatgaaaat catactgaga acgcattaat 960 gttgtatatg gcctgtactc atgcatcaaa tcctgtgtat gctactttga aaatccggat 1020 ctatttttat gattcggtaa caaattaata tatattaatc cttacatcac atgatggcaa 1080 tacatcaata gtcttttcta aaacattatc caatacatga taggctgctc ttattacatt 1140 cgaaattcct attacaccaa gctcatggag gtatttaagg acctgtgtct taaataccct 1200 caagaaaatc ccagtcggag ggcgtaagcc cgtccagatt tggaaaatta gaaaacactt 1260 gtgaagcccc agagctttcc gcaggttgtg gttgaactgt atttggaggt ggatgatgtc 1320 gtgattcgtg aggcatggtc tgctgtcgtg tttcaatatt ttgaaataca ggggatttgg 1380 aacgtcccaa ataaacacgc cactctctac tcgatccgca gtgatgtact cccctgtgcg 1440 tgaatccgtg atcatgacag ttgattgata tgtagtacga acaaccacac tgcagatcaa 1500 ctcgcctcct gcgtatgttc ttcttcttct tctgggggac tgatgttttc gcgaccggaa 1560 tagagtggtt cttggagtgt gacgaagact gcattcttga tagcccactg tttcagtgat 1620 gcattttttt cttcgtcgag atattcctta tagctgctgt ttggtccttt attgcagagg 1680 aagatggtgg gaataccgcc tttaatcatg accggctttc cgtacttcgt attgctttgc 1740 cagtcacgct gggcccccat gaattcttta aagtgcttta gatagtgggg atcgacgtca 1800 tcaatgacgt tgtaccacgc ttcattattg tacactttcg ggctgagatc cagatgacca 1860 cacaagtaat tgtggggtcc tagtgaacgt gcccacattg tctttcccgt tctactatcc 1920 ccctctatta ctacgcttat tggtctaaaa ggccgcgcag cggcagacaa tacattggac 1980 tgaacccaat cgacgagttc tggaggaact gtgtcgaagg aagtagttga gaatggagat 2040 acatagacct cagaacgtgg ttgaaaaatg cgatctaaat tcgtcattaa attatggaac 2100 tgcagaacat aatcttttgg tgctagttct tttagtactt tcaatgcatc ttctttgttt 2160 ccggtgttaa ttgcctgagc gtatgcatcg tttgccgtct gttgaccccc acgagcagat 2220 cgtccgtcga tctggaaaac accccattct agcacgtctc cgtctttgtc gatatatgcc 2280 ttgacgtcgg acgccgattt agctccctga atgttcggat ggaaatgtgc tgaccgagtt 2340 ggggatacca agtcgaagaa tctgttattc ttgcactggt atttcccttc gaattgaatg 2400 agaacatgga tatgcggaga cccatcctcg tgactctctc tacagatttt gatgaatttc 2460 ttgcaagtag gggtttctag gtttattaat tgggaaagtg cctcttcctt tgtaagagag 2520 cattttgggt aagtgaggaa atagtttttg gcattaattc taaaacgact tggcggagcc 2580 atataaaatg tcgtttcgat ccggtgtctc tcaactttct ctatgtaatt ggtgtctgga 2640 gtcccatata tagttaggac accatatggc actattgtaa tttctgaaag taaattactt 2700 taattcaaat tgcgtaaagc ggccattcgt ataatatt 2738 //