ID EF442780; SV 1; linear; genomic RNA; STD; VRL; 3437 BP. XX AC EF442780; XX DT 29-OCT-2007 (Rel. 93, Created) DT 25-NOV-2009 (Rel. 102, Last updated, Version 5) XX DE Southern tomato virus isolate Mexico-1, complete genome. XX KW . XX OS Southern tomato virus OC Viruses; Riboviria; Amalgaviridae; Amalgavirus. XX RN [1] RP 1-3437 RX DOI; 10.1016/j.virusres.2008.11.018. RX PUBMED; 19118586. RA Sabanadzovic S., Valverde R.A., Brown J.K., Martin R.R., Tzanetakis I.E.; RT "Southern tomato virus: The link between the families Totiviridae and RT Partitiviridae"; RL Virus Res. 140(1-2):130-137(2009). XX RN [2] RP 1-3437 RA Tzanetakis I.E.; RT ; RL Submitted (16-FEB-2007) to the INSDC. RL Botany and Plant Pathology & HCRL, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97331, USA XX DR MD5; 3be1dd360579c528af5c7227b1cf92ee. DR EuropePMC; PMC4119202; 25030031. DR EuropePMC; PMC4616180; 26494671. DR EuropePMC; PMC4698391; 26722014. XX FH Key Location/Qualifiers FH FT source 1..3437 FT /organism="Southern tomato virus" FT /host="tomato" FT /isolate="Mexico-1" FT /mol_type="genomic RNA" FT /country="Mexico" FT /note="isolated from a plant showing severe stunting FT symptoms" FT /db_xref="taxon:591166" FT 5'UTR 1..137 FT CDS join(138..983,985..3327) FT /codon_start=1 FT /ribosomal_slippage FT /product="fusion protein p122" FT /note="probably expressed as a fusion with the coat protein FT after a +1 ribosomal frameshift" FT /db_xref="GOA:A8R3Y5" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A8R3Y5" FT /protein_id="ABO36238.1" FT /translation="MAGVGGSAAGRVPNAANVPLTAKEKERTVMREIVEIGETFVELGI FT DKRYFQRTTYVSHMLLPNQYFKLLKQFKGKTAEELDLALGAAVAHGVLRSMRGITFKKF FT FDFLNWVKTKEGKDALGETMYAQKLEQKGRGDFSIAEVALLHCFETQRNDMLRDEKDVR FT LKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLYQQFNP FT DKVTAGAKPTRKQVKEAFDMYAEFVAKTNRLEFLKHGNVKDELQAFINAKILGYEQLGD FT KGRVVILGVSWQQWVLRWIMKWNQRTRKRLLKNLPVGKLRRGKEMTPCRPLSEIIPMER FT LEEKRTLQYKLPPQLSRATEVEAEAVSLLYPNARIEVEVRPIGRDTRAIPFSRSRWEVG FT VRKVIGGGEVLNWDIDGNKYRGGGCFADAIKLLAGATQRPPQRLLEDCYTITTAREALG FT LPSDLAVPSGKGSCHVRNYNDDATSGPFLWSFGIKKKYGLDKLLQSLMEDIYCHYSISE FT ATDRALPYFAARVGFRSKLLTMGEAVKKFTECAPMGRCVMMLDALEQFASAPLYNVLSK FT YTAERSRGQTSFRNTVVRASSDWMHFWDEVKEAAVCVELDWSKFDRERPSEDLDFMIKV FT ICSCFRPKDEVEAKLLRGYGVCMRRALVERRLITDDGGVIHIDGMVPSGSLWTGWLDTA FT LNILYIKSVLRSIDILEEEAVPKCAGDDNLTVFSKDPGDEVLEEMRVKLNDYFRAGIKK FT EDFIITRPPFHVRTFQAVFKEGTDLSKGTSKIMKKAYWREFEDELRIDQEKGLSHRWEY FT RFKGAPKFLSCYWLEDGRPIRPSHENLEKLLYPEGVHANIDDYIAAVLSMVVDNPFNHH FT NINHLKHRYIIANQVKRLSAAGGRCEDILRLARIREREDEEVPVPQIAVWRRVKEYVDL FT DSYEPAKYYIQDFNAFVSGVTSLYARSSTGGLDAYKVMDLIRGNATIGRGQWGNDVMDW FT IRFVRDHPATKYLKGAKRFREQHNQEPTTAKPSKDARRAIKLLRNSLINEAYADSNSFA FT ISISERLRRKKPTR" FT CDS 138..1271 FT /codon_start=1 FT /product="putative coat protein p42" FT /db_xref="GOA:A8R3Y6" FT /db_xref="UniProtKB/TrEMBL:A8R3Y6" FT /protein_id="ABO36237.1" FT /translation="MAGVGGSAAGRVPNAANVPLTAKEKERTVMREIVEIGETFVELGI FT DKRYFQRTTYVSHMLLPNQYFKLLKQFKGKTAEELDLALGAAVAHGVLRSMRGITFKKF FT FDFLNWVKTKEGKDALGETMYAQKLEQKGRGDFSIAEVALLHCFETQRNDMLRDEKDVR FT LKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLYQQFNP FT DKVTAGAKPTRKQVKEAFDMYAEFVAKTNRLEFLKHGNVKDELQAFINAKILGYEQLGD FT KGKSRYLRRQLAAMGVEMDHEVESEDEEEAAEEPAGGEAEEGEGDDPLQATVGDNPDGE FT ARGEEDTAVQVASPAVTRNRGRGRGRVTPLSQRKDRG" FT 3'UTR 3338..3437 XX SQ Sequence 3437 BP; 917 A; 653 C; 1009 G; 858 T; 0 other; gataaattta gtaagctacc tagcggaatt aagaactttc acaaaagggt gaggtcattc 60 acgatttact gtgaaacatc cagtgagagt cagatttctc gtcgttgctt ccgttgcctc 120 agtttagata ttccaatatg gctggtgtcg gaggttccgc ggcggggcgt gttccaaacg 180 ctgccaacgt tcctcttacg gcgaaggaga aggagaggac agtgatgagg gagatagttg 240 agatagggga gaccttcgtc gagttgggta tcgacaagcg ctactttcag agaacaactt 300 acgtctccca catgctacta cctaatcagt acttcaagtt gctcaagcag ttcaaaggga 360 agactgctga ggagttagat ttagcgttgg gggccgccgt cgctcatgga gtgttgagga 420 gcatgcgggg cataactttc aagaagttct ttgacttctt gaactgggtt aagacgaagg 480 agggaaagga tgcactgggc gagacgatgt atgctcagaa gttggagcag aaggggaggg 540 gtgattttag tattgctgag gtggcgctgc tgcattgctt tgagactcag aggaatgaca 600 tgttaaggga tgagaaagac gtgcgtctca aagccgagga ggagatcgct gatctgcagc 660 gtaagattgt caagcgaaga gagaagctcg aggaggactt gatcgcaacc aagtccaatt 720 atgagcctgt tagccggtat gtggggttga gtgactacga gttgaactgc aagtgttggt 780 ctctttacca gcagttcaac cctgataagg tgacagcagg agcgaagcct actaggaagc 840 aagtcaagga ggccttcgac atgtacgcgg aattcgtcgc caagacgaat aggttagagt 900 ttttgaagca cgggaatgtg aaggatgagc tccaggcctt cattaatgcc aagatattgg 960 gttatgagca attaggagat aaggggaaga gtcgttatct taggcgtcag ctggcagcaa 1020 tgggtgttga gatggatcat gaagtggaat cagaggacga ggaagaggct gctgaagaac 1080 ctgccggtgg ggaagctgag gagggggaag gagatgaccc cttgcaggcc actgtcggag 1140 ataatcccga tggagaggct agaggagaag aggacactgc agtacaagtt gcctccccag 1200 ctgtcacgcg caacagaggt agaggcagag gccgtgtcac tcctctatcc caacgcaagg 1260 atagaggttg aggtccgccc tattgggcgg gacactaggg ctattccatt ctcgcggtca 1320 cggtgggagg tgggagtccg taaggttatc ggaggggggg aagtcttgaa ttgggatatt 1380 gatggtaaca agtacagggg tggtggttgt ttcgctgatg caatcaaact ccttgctggt 1440 gctactcaac gtccccccca aagattactg gaagactgtt acacaatcac tacagcgcgg 1500 gaggccctag ggttaccttc agatctggcg gtcccgagtg gaaagggaag ttgccatgtt 1560 aggaattaca atgatgatgc tacaagtggg ccgtttcttt ggtctttcgg aataaagaag 1620 aagtatgggt tagataagct tttgcagagt ctgatggagg atatctactg tcattattct 1680 atatctgaag ctactgatag ggcgttgcca tattttgctg caagggtggg gttccggtct 1740 aagctcctca ctatgggtga ggcggttaag aagtttacag agtgtgctcc tatgggtcgt 1800 tgtgtaatga tgttggatgc tctcgaacaa tttgcgtctg cgccgctata taacgttctc 1860 tctaaatata ctgcggagag atcaagaggg cagacttcct ttaggaacac tgttgttcga 1920 gcgtcgtctg actggatgca tttttgggat gaggtgaaag aggcagctgt ctgtgtagaa 1980 ttggattgga gtaaattcga tagggaacgt ccttccgaag acttggattt catgattaag 2040 gtgatctgtt cttgtttcag accaaaagat gaggtggagg ctaaactgtt gaggggctat 2100 ggtgtctgta tgagaagggc tctggtggaa aggagattga taactgatga tggcggggtt 2160 atccatattg acgggatggt accaagtggg tcactctgga ctggatggtt ggacacggct 2220 ttaaacatct tgtatattaa gtccgttctt cggtctattg atatattgga ggaggaggcg 2280 gtcccgaagt gcgccgggga tgacaatcta acggtcttca gtaaggatcc tggagatgaa 2340 gtgctcgaag aaatgagggt taagctgaat gattatttta gggctgggat taagaaagag 2400 gacttcatca ttacccggcc tcccttccat gtgaggactt tccaggcggt cttcaaggaa 2460 ggaaccgacc tatcgaaggg gacatcgaag ataatgaaga aggcttattg gcgtgagttt 2520 gaagatgaat tgaggatcga ccaggagaag ggcttgtcac ataggtggga gtacaggttt 2580 aaaggggctc ccaaatttct ttcctgttat tggttagagg atggaaggcc cataaggcca 2640 tctcacgaga acttggagaa gctgctctat ccagaagggg ttcatgcaaa tattgacgat 2700 tatatcgcag cagttttatc catggttgta gacaatccat tcaatcacca caatattaac 2760 catctcaagc acagatacat catagccaat caggttaaga ggctgtcagc agcaggcggg 2820 agatgcgagg acatcctccg attggcgagg attagggaac gtgaagatga agaggtacct 2880 gtcccacaaa ttgctgtatg gcgcagggtg aaggaatatg tcgatttgga cagctacgag 2940 ccagccaagt actacatcca ggatttcaac gcatttgtct caggcgtcac ctccctatat 3000 gccaggtctt ccacaggcgg tcttgatgca tacaaggtca tggatctgat caggggtaat 3060 gctacaatcg gaagaggaca gtggggtaat gacgtcatgg attggatcag attcgttcgg 3120 gaccatccag caactaagta cctcaaagga gcgaaacgat tcagggaaca gcataatcaa 3180 gaacctacga cagccaaacc atcgaaggat gcgagacgag ccatcaagtt actgcgtaat 3240 agtctcatca atgaggccta cgccgactcc aacagctttg ccatttccat atccgaacgt 3300 ctgagacgga agaagccaac tagataggat ttaattttat gttttgttat ttatatctga 3360 ctctcattgt aaatctactt tattaaagat gtcgcactcg gcagttctta atgctgttat 3420 tagagtagcg cgtcttc 3437 //