Dbfetch
ID EF428256; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC EF428256; XX DT 07-MAR-2007 (Rel. 90, Created) DT 04-SEP-2008 (Rel. 97, Last updated, Version 3) XX DE Mesta yellow vein mosaic virus - [India:Barackpore2:2006] segment DNA A, DE complete sequence. XX KW . XX OS Mesta yellow vein mosaic virus - [India:Barackpore2:2006] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RX DOI; 10.1007/s00705-008-0181-z. RX PUBMED; 18696007. RA Das S., Ghosh R., Paul S., Roy A., Ghosh S.K.; RT "Complete nucleotide sequence of a monopartite begomovirus associated with RT yellow vein mosaic disease of mesta from north India"; RL Arch. Virol. 153(9):1791-1796(2008). XX RN [2] RP 1-2752 RA Ghosh R., Paul S., Palit P., Acharyya S., Mir J.I., Ghosh S.K., Roy A.; RT "Mesta yellow vein mosaic virus - a new recombinant begomovirus from RT Eastern India"; RL Unpublished. XX RN [3] RP 1-2752 RA Ghosh R., Paul S., Palit P., Acharyya S., Mir J.I., Ghosh S.K., Roy A.; RT ; RL Submitted (08-FEB-2007) to the INSDC. RL Crop Protection, Central Research Institute for Jute and Allied Fibres, RL Barrackpore, Kolkata, West Bengal 700120, India XX DR MD5; 740e34a42c6f7bccf56788f3606e384e. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Mesta yellow vein mosaic virus - FT [India:Barackpore2:2006]" FT /segment="DNA A" FT /host="Hibiscus cannabinus" FT /isolate="Barrackpore1:Eastern India" FT /mol_type="genomic DNA" FT /country="India" FT /clone="FL-3" FT /PCR_primers="fwd_seq: gacagtactcatgcctctaaccc, rev_seq: FT agtgtggttttcgtacttccc" FT /db_xref="taxon:508747" FT gene 132..488 FT /gene="AV2" FT CDS 132..488 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:A3RLU7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A3RLU7" FT /protein_id="ABO15712.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL FT ISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSYVGEQAHVS FT EAQNVQDVQKPRCS" FT gene complement(271..600) FT /gene="AC5" FT CDS complement(271..600) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A3RLU8" FT /protein_id="ABO15718.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRNIWASV FT HPVHSGLPIHGPVRPHTRLCDADSGGNCTGCIGAVEVQSTTHLRRGGRNDDIGRTLRHN FT SENVR" FT gene 292..1062 FT /gene="AV1" FT CDS 292..1062 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="capsid protein" FT /db_xref="GOA:A3RLU9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A3RLU9" FT /protein_id="ABO15713.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRMWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1028..1468) FT /gene="AC3" FT CDS complement(1028..1468) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:A3RLV0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A3RLV0" FT /protein_id="ABO15716.1" FT /translation="MDLRTGEPITAAQAWSGAYIWEVPNPLYFKILSHEDRPYSSNMDI FT ITVRIQFNYNLRRALGVRKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLKNLGVISLNA FT IIRAVDHVLYNKLEQTMYVDQYSEIKFDLYNINLLQNRRSNS" FT gene complement(1161..1613) FT /gene="AC2" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="TrAP" FT /db_xref="GOA:A3RLV1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A3RLV1" FT /protein_id="ABO15715.1" FT /translation="MRSSSPLKDHCTQVPIKVQHREAKRRNRRKRVDLECGCSYYLSIN FT CFNHGFTHRGTHHCSSSMEWRLYLGSSKSPLFQNPQPRGPSLFEQHGHNNSQDPIQLQP FT SESSGSAQVFSDLPNLDDLTPSDWSFLKGIQNPSAQVSQKSGCNLT" FT gene complement(1510..2598) FT /gene="AC1" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep" FT /db_xref="GOA:A3RLV2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A3RLV2" FT /protein_id="ABO15714.1" FT /translation="MPPRRNGIYSKNYFITYPKCSLTKEETLSQLLNLQTPTSKKYIKI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYID FT KDGDILEWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFNQVPEELEEWASENVVDAAARPLRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPISSYKEFLEEEKNTALKNWAVKNAIFVTLEGSLY FT SGTNQSTAQGSEETQQEEESRS" FT gene complement(2142..2444) FT /gene="AC4" FT CDS complement(2142..2444) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A3RLV3" FT /protein_id="ABO15717.1" FT /translation="MGLLTCMFSSSSRGNSSARICDSSTWSPQTDQHISIRTYRELNPA FT PTSSPTSTRTGTFSNGANFRSTEGQQEEGSRQPTTLTPQHLTREVSQRLLESLRN" XX SQ Sequence 2752 BP; 704 A; 574 C; 635 G; 839 T; 0 other; accggatggc cgcgcgattt ttttgtgggc ccctccacta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taaatttcct gcctattata agtacttcgt cgctaagttc 120 ttgtttgaaa aatgtgggat ccacttttaa acgagtttcc cgagacggtt cacgggtttc 180 gttgcatgct tgctatcaaa tatcttcaac aattgtctga ggaatactcc cctgatacgg 240 ttgggtacga tctaattcgc gatttaattt ctatcttacg ttctcggaat tatgtcgaag 300 cgtcctgccg atatcgtcat ttctaccccc gcgtcgaagg tgcgtcgtcg actgaacttc 360 gacagcccct atgcaacccg tgcagttgcc cccactgtcc gcgtcacaaa gtctcgtatg 420 tgggcgaaca ggcccatgta tcggaagccc agaatgtaca ggatgtacag aagcccagat 480 gttcctaagg gatgtgaagg cccatgtaag gtgcagtctt ttgatgcgaa gaatgatatt 540 ggtcacatgg gtaaggttat ttgtctttct gatgttacta ggggtattgg gctgacccat 600 cgagtaggga aacgtttctg cgtgaagtca ttgtattttg ttggcaaaat ttggatggac 660 gagaacatca agaccaagaa ccatacgaat actgttatgt tttggattgt tagagatagg 720 cgtccttcag gaaccccaaa cgatttccag caagtgttca atgtttatga taacgagccc 780 tctacggcta ctgtgaagaa cgaccagcgt gatcgttttc aggtgttgag gaggtttcaa 840 gcaacagtca caggtggtca atatgctgct aaggaacaag ctataattag gaaattctat 900 cgtgttaaca attatgtggt gtataatcac caggaagctg ggaagtacga aaaccacact 960 gagaatgctt tgttgttgta tatggcatgt actcatgcct ctaaccctgt gtatgctact 1020 ttgaaagtta ggagttactt ctacgattct gtaacaaatt gatattataa agatcgaatt 1080 ttatttctga atattgatct acatacatag tttgttccaa tttattatac aatacatgat 1140 ctactgctct aataattgcg ttaagtgaga ttacacccag atttttgaga tacttgagca 1200 cttgggtttt gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc 1260 ggaaggtcag aaaacacttg cgcactccca gagctctccg aaggttgtag ttgaattgga 1320 tcctgactgt tattatgtcc atgttgctcg aataaggacg gtcctcgtgg ctgaggattt 1380 tgaaatagag gggatttgga acttcccaga tataggcgcc actccatgct tgagctgcag 1440 tgatgggttc ccctgtgcgt aaatccatgg ttgaagcagt taatggatag ataataagaa 1500 cacccgcatt caagatctac tctcttcctc ctgttgcgtc tcttcgcttc cctgtgctgt 1560 actttgattg gtacctgagt acagtgatcc ttcaagggtg acgaagatcg cattcttcac 1620 tgcccagttt ttgagtgcgg tgttcttttc ctcctctaga aattctttat aactgctgat 1680 gggaccagga ttgcagagga agattgttgg tattccgcct ttaatttgaa ctggcttccc 1740 gtacttggta ttggattgcc agtccctttg ggcccccatg aactctttaa agtgcttgag 1800 gaagtgcgga tctacgtcat caatgacgtt ataccatgcg tcgttactgt acacctttgg 1860 actaagatct aagtgcccac acagatagtt atgtgggcct aaagacctag cccacattgt 1920 cttcccagta cgactatctc cctcaattac tatactttga ggtctcaggg gccgcgcagc 1980 ggcgtcgaca acattttccg acgcccactc ttcaagttct tctggaactt gattgaaaga 2040 agaagaggaa aaaggagaaa cataaggagc tggtggctcc tgaaatatcc tgtctagatt 2100 tgcatttaaa ttatgaaatt gtagtacaaa atctttagga gctagttcct taatgactct 2160 aagagcctct gacttacttc ccgcgttaag tgctgcggcg taagcgtcgt tggctgtctg 2220 ctgccctcct cttgctgacc ttccgtcgat ctgaaattgg ccccattcga gaatgtcccc 2280 gtccttgtcg atgtaggact tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gatctgtttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 tttcccctcg aactggatga gaacatgcaa gtgaggagtc ccatcttcgt gaagctctct 2460 gcagatttta atatattttt ttgaagttgg ggtttggaga tttaataatt gggaaagtgt 2520 ttcctctttg gtgagagaac atttgggata agtgatgaaa tagtttttgg aataaatacc 2580 gttacgcctt ggaggcatgt tgactagaat tgatcaccga ttgaccgctc ttgcaactct 2640 ctcctgtata tcggtgatca atatatagtg atcgccaaat ggcataatgg taataaaaca 2700 acttttattt gaaattcgga aaaaaaattt ttgcggccat ccgcttaata tt 2752 //