ID   EF423644; SV 1; linear; genomic DNA; STD; VRL; 1364 BP.
XX
AC   EF423644;
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DT   23-JUL-2007 (Rel. 92, Created)
DT   23-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus isolate recombinant Ty-1S-C.66 400dpi type
DE   III nonfunctional CP gene, partial sequence; REn and TrAP genes, complete
DE   cds; and Rep gene, partial cds.
XX
KW   .
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OS   Tomato yellow leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-1364
RX   DOI; 10.1016/j.virol.2007.03.045.
RX   PUBMED; 17467025.
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   "Frequent occurrence of recombinants in mixed infections of tomato yellow
RT   leaf curl disease-associated begomoviruses";
RL   Virology 365(1):210-219(2007).
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RN   [2]
RP   1-1364
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   ;
RL   Submitted (02-FEB-2007) to the INSDC.
RL   Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora,
RL   CSIC, Algarrobo-Costa, Malaga 29750, Spain
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DR   MD5; 82af665fb4575e6c5690857c33ecc4e8.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1364
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /isolate="recombinant Ty-1S-C.66 400dpi type III"
FT                   /mol_type="genomic DNA"
FT                   /country="Spain:Malaga"
FT                   /note="TYLCSV/TYLCV recombinant"
FT                   /db_xref="taxon:10832"
FT   misc_feature    <1..590
FT                   /note="nonfunctional CP due to mutation"
FT   CDS             complement(587..991)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /db_xref="GOA:A7KI29"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:A7KI29"
FT                   /protein_id="ABS29934.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT                   ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLKVFRHQVLKYLDSIGVISINN
FT                   VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT   CDS             complement(732..1139)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /db_xref="GOA:A6MNQ7"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:A6MNQ7"
FT                   /protein_id="ABS29935.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRIDLDCGCSYYQHL
FT                   NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT                   HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(1048..>1364)
FT                   /codon_start=3
FT                   /product="Rep"
FT                   /db_xref="UniProtKB/TrEMBL:A7KI31"
FT                   /protein_id="ABS29936.1"
FT                   /translation="WYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTI
FT                   FLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFASINQGPTQDSQEETNKA
FT                   "
XX
SQ   Sequence 1364 BP; 372 A; 228 C; 311 G; 453 T; 0 other;
     cctgatgtcc ctttggttgt gaaggtcctt gtaaagtcca gtcgtatgag cagcgtgacg        60
     acgtcaagca taccggtgtt gttcgttgtg ttagtgatgt aactaggggt tctggtatta       120
     cacatagagt aggtaaacgg ttttgtatta agtcaatcta tattttaggg aagatttgga       180
     tggatgaaaa tataaaaaaa caaaatcata ctaaccaggt catgttcttt ttagtacgag       240
     accgaaggcc gtatggaact agtcctatgg attttggtca agtttttaac atgtttgata       300
     atgaacctag tacggctact gtgaagaacg atttaaggga taggtaccaa gtaatgagga       360
     agttccatgc cacggtggta ggtggtccgt cagggatgaa ggagcagtgt ctgttgaaga       420
     ggttttttaa agttaatacc catgtagttt ataatcatca agagcaggcg aagtatgaaa       480
     accatactga gaatgcgttg ttattgtata tggcatgtac gcatgcctct aatccagtgt       540
     atactactat gaaaatacgc atctatttct atgattcaat atcaaattaa taaaatttat       600
     attttatatc atgagtttct gttacattta ttgtgttttc aagtacatca tacaatacat       660
     gatcaactgc tctgattaca ttgttaattg aaattacacc aatactatct aaatacttaa       720
     gaacttgatg tctaaatact tttaagaaac gaccagtctg aggctgtaat gtcgtccaaa       780
     ttcggaagtt gagaaaacat ttgtgaatcc ccaatacctt cctgatgttg tggttgaatc       840
     ttatctgaat ggaaatgatg tcgtggttca ttagaaatgg cctctggctg tgttctgtta       900
     tcttgaaata gaggggattg tttatctccc agataaaaac gccattctct gcctgaggag       960
     cagtgatgag ttcccctgtg cgtgaatcca tgattgttgc agttgaggtg ttggtagtat      1020
     gagcagccac agtctaggtc tatacgctta cgccttattg gtttcttctt ggctatcttg      1080
     tgttggacct tgattgatac ttgcgaacag tggctcgtag agggtgacga aggttgcatt      1140
     cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatatt ccctatatga      1200
     ggaggtaggt cctggattgc agaggaagat agtgggaatt ccccctttaa tttgaatggg      1260
     cttcccgtac tttgtgttgc tttgccagtc cctctgggcc cccatgaatt ctttgaagtg      1320
     ctttaaataa tgcgggtcta cgtcatcaat gacgttgtac catg                       1364
//