Dbfetch
ID EF408822; SV 1; linear; genomic RNA; STD; VRL; 2447 BP. XX AC EF408822; XX DT 21-FEB-2007 (Rel. 90, Created) DT 16-JAN-2009 (Rel. 99, Last updated, Version 2) XX DE Pepino mosaic virus isolate PepMV-SW RNA-dependent RNA polymerase (RdRP) DE gene, partial cds; TGBp1 (TGB1), TGBp2 (TGB2), and TGBp3 (TGB3) genes, DE complete cds; and coat protein (cp) gene, partial cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2447 RA Hasiow B., Borodynko N., Pospieszny H.; RT "Characterization of two distinct Polish isolates of Pepino mosaic virus"; RL Eur. J. Plant Pathol. 122(3):443-445(2008). XX RN [2] RP 1-2447 RA Hasiow B., Borodynko N., Pospieszny H.; RT ; RL Submitted (30-JAN-2007) to the INSDC. RL Virology and Bacteriology, Institute of Plant Protection, Miczurina 20, RL Poznan 60-318, Poland XX DR MD5; 4236bbdddb6f21e6def87449cfd7f95d. DR EuropePMC; PMC3132167; 21702943. XX FH Key Location/Qualifiers FH FT source 1..2447 FT /organism="Pepino mosaic virus" FT /isolate="PepMV-SW" FT /mol_type="genomic RNA" FT /isolation_source="infected leaves" FT /db_xref="taxon:112229" FT gene <1..510 FT /gene="RdRP" FT CDS <1..510 FT /codon_start=1 FT /gene="RdRP" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:A3FMJ6" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A3FMJ6" FT /protein_id="ABN58684.1" FT /translation="MRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGV FT VQEKPSFKKLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEA FT IGNLHTAARSYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKS FT PPKATH" FT gene 536..1240 FT /gene="TGB1" FT CDS 536..1240 FT /codon_start=1 FT /gene="TGB1" FT /product="TGBp1" FT /note="triple gene block 1 protein" FT /db_xref="GOA:A3FMJ7" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3FMJ7" FT /protein_id="ABN58685.1" FT /translation="MERSTLINLLQLHHFELKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT gene 1221..1592 FT /gene="TGB2" FT CDS 1221..1592 FT /codon_start=1 FT /gene="TGB2" FT /product="TGBp2" FT /note="triple gene block 2 protein" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="ABN58686.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT gene 1444..1698 FT /gene="TGB3" FT CDS 1444..1698 FT /codon_start=1 FT /gene="TGB3" FT /product="TGBp3" FT /note="triple gene block 3 protein" FT /db_xref="GOA:Q8B083" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8B083" FT /protein_id="ABN58687.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT gene 1737..>2447 FT /gene="cp" FT CDS 1737..>2447 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:A3FMK0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:A3FMK0" FT /protein_id="ABN58688.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 2447 BP; 736 A; 590 C; 452 G; 669 T; 0 other; atgaggttgt ctggtgaagg tccaactttt gatgccaaca cagaatgttc aatagcatat 60 actgctacaa gataccatct tgattctaca gtcaagcagg tttatgctgg agatgatatg 120 gcattagatg gagttgtcca agaaaaaccc tcttttaaaa aactacagaa caagcttaaa 180 ctcacctcaa agacactatt tccaaaacag gttaaaggtg attatgctga attctgtggt 240 tggactttca ctcctggtgg tatcattaaa aaccctttga aaatgcatgc ttccattatg 300 ttgcaagagg caatcggcaa tttacacact gctgccagat catacgccat tgacatgaag 360 cattcatacc aaatgggtga tgagctgcac aattacttaa caccagatga agctgaacaa 420 cacttccttg ctgttcggaa gttgcacaag ttacaccaag gagaagcaat gagacttggt 480 gaaaagagcc ctccaaaagc aacacattga ggggttaagt tttccccagt tcgaaatgga 540 aagatcaact ctgattaatt tacttcaatt gcaccacttc gagctaaaac tcagtgttga 600 aggaatcata gttgtgcacg gaattgcagg cactgggaaa accactttac ttaggacttt 660 attttctgct taccctagct tagttatagg ttcacctagg ccttgctatt tagataaaca 720 aaacaaaatt tcacaagttt gcttatcttg ctttcccaat actcattgtg atattgtcga 780 tgagtatcat ttgctagaaa gttttccaga accaaaattg gctatctttg gtgacccctg 840 tcaatgcaca tacattgaga gacttagagt cccacattac acttccttca gaactcatag 900 atttggaaag tcaactgctg agattttaaa caaactgttt gaccttaata tagtctcagt 960 taagaaagaa gacgacatcg ttgaattctt taaccctttt gaagttgacc ccactgagca 1020 tatctctgcc tctgaagaag aagtcttgga ctttgtttct gaccaagtgg tgaccactag 1080 ctcagaggaa ctagcaggac ttgagtttgc agaaacaact ttctactgca caacattggc 1140 cgcagctgtt gctgaaaatc ctgctaagac tttcatctct ctgactagac acacccacaa 1200 actcaccatt ggggaactaa atgccaggtc taactcctag agctgacctc actgacacat 1260 acaaaatcat tgccattgct ttcttgttgt cagcttgcat ttacttccaa aatagccact 1320 accaacctgt tgctggagac aacttgcacc gtttgccttt tggtggccaa tatcaagacg 1380 gcaccaaaaa gatatcttat tttccacaac agcagtcata ctttcattct ggaaacaaat 1440 taaatgtcct catacttatc ttcattctca cattgggtat tgtcctcacc aataaattta 1500 gttttagctt tagtcgtact actcaccagc attcttgcta taacacacat tcagcaacca 1560 acaatacaca accattgtca ggtcatcatt gacggtgctg caatagtcat aacaaattgt 1620 gagaacacac cagaagtgct taaagcaatc aacttctccc cttggaacgg gttaagtttt 1680 cctaaatttg aaaattaata ttgagtgttc acaaaaatca acttcaataa acaatcatgc 1740 ctgacacaac acctgttgct gccacttcaa gtgcaccacc cacagccaaa gatgctggtg 1800 ccaaagctcc ttctgacttc tcaaatccca atacagctcc tagtctcagt gatttgaaga 1860 aagtcaagta tgtctccacc gtgacctccg tggccacacc agctgaaatt gaagccctag 1920 gcaaaatctt caccgctatg ggccttgccg ccaatgagac tggtccggcc atgtgggatc 1980 tagctcgtgc atatgctgat gtgcagagtt ctaaatcggc acagctgatt ggagctaccc 2040 cttccaaccc tgcactatca cgccgagccc ttgctgctca gtttgatcga atcaatataa 2100 cccccaggca attttgcatg tactttgcca aagttgtttg gaacatactt ctcgacagca 2160 acattccacc agcaaattgg gccaaacttg gttaccaaga agatacaaaa tttgctgcat 2220 ttgacttctt cgatggagtc accaaccctg ccagcctgca gcctgctgat ggtcttatca 2280 ggcagccaaa tgagaaagaa ctagctgctc actccgtagc taagtacggc gccttggcta 2340 ggcaaaagat ctccacaggt aattatatta ccacacttgg agaagtcaca cgtggacaca 2400 tgggaggagc taacaccatg tacgcgatag acgcaccccc tgaactt 2447 //