ID EF408821; SV 3; linear; genomic RNA; STD; VRL; 6412 BP. XX AC EF408821; XX DT 21-FEB-2007 (Rel. 90, Created) DT 27-FEB-2008 (Rel. 94, Last updated, Version 4) XX DE Pepino mosaic virus isolate PepMV-PK, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6412 RX DOI; 10.1007/s11262-007-0171-3. RX PUBMED; 17934803. RA Hasiow B., Borodynko N., Pospieszny H.; RT "Complete genomic RNA sequence of the Polish Pepino mosaic virus isolate RT belonging to the US2 strain"; RL Virus Genes 36(1):209-214(2008). XX RN [2] RP 1-6412 RA Hasiow B., Borodynko N., Pospieszny H.; RT ; RL Submitted (30-JAN-2007) to the INSDC. RL Virology and Bacteriology, Institute of Plant Protection, Miczurina 20, RL Poznan 60-318, Poland XX RN [3] RC Sequence update by submitter RP 1-6412 RA Hasiow B., Borodynko N., Pospieszny H.; RT ; RL Submitted (18-APR-2007) to the INSDC. RL Virology and Bacteriology, Institute of Plant Protection, Miczurina 20, RL Poznan 60-318, Poland XX DR MD5; 6972c861bc6e83079cdc8099c8bbc9e0. DR EuropePMC; PMC3356388; 22623984. XX CC On May 24, 2007 this sequence version replaced gi:126031753. XX FH Key Location/Qualifiers FH FT source 1..6412 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon esculentum" FT /isolate="PepMV-PK" FT /mol_type="genomic RNA" FT /country="Poland" FT /isolation_source="infected leaves" FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT gene 86..4402 FT /gene="RdRp" FT CDS 86..4402 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:A3FMJ1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3FMJ1" FT /protein_id="ABN58679.2" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVVATHTEIGQAICEAATTYKERRQLTNLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHQSYENAINNLGIEINEDVPESSGTNKTLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPSFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYDQHHGHSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 4428..5132 FT /gene="TGB1" FT CDS 4428..5132 FT /codon_start=1 FT /gene="TGB1" FT /product="TGB1" FT /note="triple gene block 1 protein" FT /db_xref="GOA:A3FMJ2" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3FMJ2" FT /protein_id="ABN58680.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNQLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLGGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 5113..5484 FT /gene="TGB2" FT CDS 5113..5484 FT /codon_start=1 FT /gene="TGB2" FT /product="TGB2" FT /note="triple gene block 2 protein" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ABN58681.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 5336..5584 FT /gene="TGB3" FT CDS 5336..5584 FT /codon_start=1 FT /gene="TGB3" FT /product="TGB3" FT /note="triple gene block 3 protein" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ABN58682.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 5630..6343 FT /gene="cp" FT CDS 5630..6343 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:A3FMJ5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:A3FMJ5" FT /protein_id="ABN58683.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAALD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6344..6412 XX SQ Sequence 6412 BP; 2049 A; 1465 C; 1158 G; 1740 T; 0 other; gaaaacaaaa cataacacat aatatcaaaa gtgacctaac acaacataac cacgtggaaa 60 aacagcgaaa gcactttacc acattatgtc tcgtgttaga aacactttag aaaagatcag 120 ggacccacaa gtacaatcta gcatttgtga agccgcttac caacatgtca gacctgtgct 180 caaggaatcc ctaatcaact gtccttatgc gcttaatgac tatgaagcag acacccttga 240 gaatttaggt gtcacaataa acccccatgc aatccaaaca catactcatg cggcagctaa 300 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg acgagaaagt 360 taccttcatt ttcctcaaaa gaagcaaact gagatacatg cgaagagctg ctgtacataa 420 agatgttttt gttaatcaca atatagaacc caaggatttc ttcaggtatg atgaggaatc 480 tacatctact agtttctccg tgaacaccag gatcgcttac atctccgatt ctctacattt 540 catggaacca gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat 600 ggcaactgtc gttttacctg ttgaagccat ccacaaacaa acatctttat ttccagcgat 660 atactccatt aattacaatg aagaaggttt tgagtatatc cctggttctc atggtggagg 720 ggcatacttt cataagtatg aaacattaga ctggctcaaa tactctagat ttgttggcca 780 ggacccctta actggactcc gatacaccat aaccattcaa atggtagaga gtttaggagc 840 caaccatctt ttcctcttcc aaagaggaaa ttttgaaaca cctttataca ggacgtttca 900 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta atgccacaaa 960 gcccatgcca agatccaggg caattcagct gtatttatat gtcaaatctg tcaataaggt 1020 gacacaaaga gatatctttg cgaaagtaag gcaacttata tctacagctg aacttgaatt 1080 gtatgaccct gatgaactta cacatattgt caattatttc gcatatgtct cagaactaag 1140 ctcaatcaac gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc 1200 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg atttcaatca 1260 acttttaact gctcttcaat ggaaagactt ctcttacacc attaaaactg aagagttagt 1320 tgttgctaca cacactgaaa ttggccaggc aatctgtgaa gctgcgacca catacaaaga 1380 aagaagacaa ttgaccaatt tagtcaaaca aggcgcagta acattagctg atttcaaaga 1440 agcggaccag catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc 1500 ccaccagagc tatgaaaatg ccatcaacaa tcttggcatt gaaattaatg aggatgtacc 1560 tgaaagttcc ggcactaata aaacattgct taacaatgaa atatctttag caatgtcatc 1620 tgctgaacat gtgcaagctg ttcaagaaat tgagtcttta ctctctaacc ccgaagcggc 1680 accaatattg ccccctgcac atgttaaaac atgggctagc cttgcatctg acacttccag 1740 cactaaaaac cgtgaaatcg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc 1800 tagttgcagc taccttcaac caaataagga attgtcaaaa cccaaggctg ctgataacaa 1860 tctcccctgg aatgcttgga tcccattgct taatgcacac ggcttcaaag gggatcaatt 1920 acaatacggc ccagatggta acttgataca gcccatccaa gacattaaca attcacagcc 1980 tagatctgac tatccgtctt ctctgccatg tgaacttgtg gaaactttga ggaaaattaa 2040 gcgtgctgtc tatgccatcc caataagcca caggagagct agtgcttaca gttctgacat 2100 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga aagaaagctt 2160 tgctttcaaa atgcaacatg aagacatcgt caaatcaggt gttgtcatac atggttgcgg 2220 aggttctggc aaatcccagg cattacaaaa cttcttgaga acattgggtg attcaaatga 2280 ttgctgtact gttgtagtac ccactgttga acttagaaat gactgggtaa acaaactcca 2340 taaattgccc atggagcata tcaaaacatt tgagaaagca atgattcaac ctagctttcc 2400 aattgttata tttgatgatt acaccaagtt gccacctggc tacattgaag catacttatt 2460 tcaccatgcc aacactgagc ttttcatact tactggtgat tctaggcaaa gcgtgtacca 2520 tgaatctaac aatgaagcgt acattgcctc attagatgaa gctgttgcat actacgctaa 2580 ttactgcggt ttttatttaa atgctactca tagaaatgtc cgtagtttgg ccaacaaact 2640 tggtgtttac agtgagaaag aaggacactt gaaaatcact tttgcttcac atgccttaca 2700 aaagtgcaaa gtgccaattt tagttccttc tcaaatgaaa aagagtgcta tgttagacat 2760 tggacataaa tccatgacct atgctggttg ccaaggttta acagcaccca gggtacaaat 2820 tctccttgat aaccacacgc aacattgctc tgacagagtt ctgtacacct gtctgtctcg 2880 tgcagttgat tccatccatt tcatcaatac tggtcccaac aattcagaat tttgggataa 2940 gcttgaagca acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga 3000 aatgctcaat tctaagcctg ctgatgacag tccaactgag cctgaagcac ctgttacaca 3060 tttcccaata gcaaatggaa ataacttaga gaaattagct tctgctttgc ctgaaaaatt 3120 tgctagggag atttatgacc agcatcatgg ccactccaac acaatccaaa ctgagaaccc 3180 tgtggtccaa cttttccaac atcaacaagc gaaagacgag acactctttt gggctacaat 3240 tgaagctaga ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa 3300 agatgttgga gacattctct tcttcaatta ccataatgcg atgtgcttgc ctgccgatcc 3360 tgtggacttt gaagaaaaga cctgggagat ctgtgctgct gaagtgaaaa acacttatct 3420 tgccaaaccc atggccaatc ttatcaatgc ggcaagtaga caatcacccg actttgactc 3480 taataagatc tcattattcc taaagtctca atgggtgaaa aaagtggaaa aacttggagc 3540 tatcaaatca aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta 3600 tggtactatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa aacacatatt 3660 catcaattgt gaaaccacaa ctgatgatct caataaattt gtcaaagatg gctggaactt 3720 taacagaacc gcccaaacaa atgacttcac tgcttttgat cagtcacaag atggagcaat 3780 gcttcaattt gaagtcatga aagcaaaatt ttttaacatt ccagctgatg tcattgaagg 3840 ctacatcaac atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact 3900 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat acactgccac 3960 aagattccat attgacaata ctgttaagca agtgtatgcc ggtgacgaca tggcattaga 4020 tggagttgtg agtgaaaaga aatcattcag gaagttacaa aatctactaa aactcacttc 4080 aaaaacgctg tacccaaaac aggttaaagg ggattacgct gaattttgtg gttggacttt 4140 cacaccaggg ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga 4200 agccattggc aatctgcaca cagcagccag atcttatgca attgacatga agcattcata 4260 ccaaatgggt gaccaactgc atgactacct aacccccgat gaagctgaac aacatttcct 4320 agctgtgaga aagcttcaca aactccatca aggcgaggcc atgcgtcttg gggagaaaag 4380 tccaccaaga tcaacccatt aaggggttaa gttttcccca gtttgaaatg gaaagatcaa 4440 ctttgatcaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca 4500 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttattttccg 4560 cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa 4620 tttcacaagt ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtatc 4680 atctcttaga aagttttcct gaaccaaaac tagccatttt tggtgacccc tgtcagtgca 4740 cttacattga aaggttgaga acacccaact acacatcctt cagaacacac cgatttggca 4800 aatccactgc tgctctacta aaccagttat ttgatcttaa cattgagtca gtcaaagcac 4860 aagacgacac agtagaatac tttgatcctt tcgcagtgga cccctctgaa cacatctctg 4920 cttcagaaaa agaagttttg gaattcgtag gtgatcaagt tgagactaca agctctgaag 4980 aactagctgg tctcgagttt agtgaagtta ctttctactg taccacactt ggcggtgctg 5040 ttcaagaaaa tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa 5100 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac gtataaaatc 5160 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca 5220 gttgcaggtg ataatttgca cagactaccc tttggtggtc agtatcaaga cggaactaag 5280 aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc 5340 ctcatactta tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc 5400 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt 5460 caatcagtgc caggtcatca ttgacggtgc agccatagtt ataacaaatt gtccaaacac 5520 accagaagtg cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt 5580 gtgaaattat atttgttatc tagttaaatt caaacaattt aactcaacta tggaaaacca 5640 acctacagct tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag 5700 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga agaagatcaa 5760 atacgtgtca actgtcactt cagttgccac gcctgctgaa attgaggccc ttggcaagat 5820 ctttactgcc atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg 5880 tgcttatgct gacgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa 5940 ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag 6000 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc 6060 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg ctcttgactt 6120 ctttgatgga gtcacaaatc cagctagtct acagcctgca gatggcctaa tcaggcagcc 6180 caatgaaaaa gagcttgccg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa 6240 aatatccact ggcaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg 6300 cgccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg aaacttaacc 6360 agagtggggt tttctatagt ttattttccc ttagtatcta aatctactaa at 6412 //