ID   EF408185; SV 1; linear; genomic RNA; STD; VRL; 758 BP.
XX
AC   EF408185;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-MAV isolate HR TO2B1 RNA-dependent RNA polymerase
DE   P2 fusion protein and coat protein P3 genes, partial cds; and movement
DE   protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus MAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-758
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-758
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
DR   MD5; 5dc9fb5adbdf261ea479e153c46d2239.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..758
FT                   /organism="Barley yellow dwarf virus MAV"
FT                   /host="Anthoxanthum redolens"
FT                   /isolate="HR TO2B1"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Tongariro National Park"
FT                   /note="phylogenetically closer to BYDV-SGV but distinctly
FT                   separate serogroup: MAV"
FT                   /db_xref="taxon:2169984"
FT   CDS             <1..58
FT                   /codon_start=2
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /db_xref="GOA:B6RCJ3"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCJ3"
FT                   /protein_id="ABR26546.1"
FT                   /translation="HLQSILLQIPEKPPPPTI"
FT   CDS             176..>758
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /db_xref="GOA:B6RCJ4"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCJ4"
FT                   /protein_id="ABR26547.1"
FT                   /translation="MNSVGRRRNPRRNVAKRPRTIRPVVVVQPSRGGVRRRSNRRTNRR
FT                   RPNSISGSAGRAEVFTFSVNDLKANSTGTIKFGPDLSQCPAVSNGVLKSYHRYKITNIT
FT                   VEFKSHASSATTGAIFIELDTACTQSTLGSQINSYTISKSGTKRFTVNQIGGKDFRESS
FT                   VNQFYLLYKANGTTTDVAGQFIIKMVIQTIN"
FT   CDS             213..668
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCJ5"
FT                   /protein_id="ABR26548.1"
FT                   /translation="MSQNALELFGQWLWSNHPEAESDEDPIDEQIEEGQILYLDQQAGL
FT                   RYSLSQSTTLRPTPPGQSNSAPIFRNVLRFQTEYLSPTTVTRSQTLRSSLSPTPHQPQP
FT                   ALSLLNSTLRAHNQPLVARLTHTPSQNLEPRGSPSTKLVARTSGKAR"
XX
SQ   Sequence 758 BP; 232 A; 198 C; 151 G; 177 T; 0 other;
     acatctgcaa tcaatactcc tccaaattcc ggagaaaccc cccccgccaa caatataatt        60
     aacttcgaac ttttagcggg gttcggcata ggcttcatta gcgctatccc ttgtacatta       120
     gctctcacgt accttattta caataaagtt tcagacacta ctagagaggt agtgaatgaa       180
     ttcagtaggc cgtagaagaa atcctcgtag aaatgtcgca aaacgcccta gaactattcg       240
     gccagtggtt gtggtccaac catccagagg cggagtccga cgaagatcca atagacgaac       300
     aaatagaaga aggccaaatt ctatatctgg atcagcaggc agggctgagg tattcacttt       360
     ctcagtcaac gaccttaagg ccaactccac cgggacaatc aaattcggcc ccgatctttc       420
     gcaatgtcct gcggtttcaa acggagtact taagtcctac caccgttaca agatcacaaa       480
     cattacggtc gagtttaagt cccacgcctc atcagccaca accggcgcta tctttattga       540
     actcgacact gcgtgcacac aatcaaccct tggtagccag attaactcat acaccatctc       600
     aaaatctgga accaagaggt tcaccgtcaa ccaaattggt ggcaaggact tcagggaaag       660
     ctcggtgaac caattttact tgttgtacaa ggcaaacggt acaacaactg atgtcgcagg       720
     tcagttcatt atcaagatgg tgattcagac cataaacc                               758
//