ID   EF408175; SV 1; linear; genomic RNA; STD; VRL; 788 BP.
XX
AC   EF408175;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAV isolate PAV SI-o3 RNA-dependent RNA
DE   polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus PAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-788
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-788
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
DR   MD5; b6c4bebef9bde66c18d12dd02ff31cfd.
DR   GrainGenes; EF408175; EF408175.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..788
FT                   /organism="Barley yellow dwarf virus PAV"
FT                   /host="Avena sativa"
FT                   /isolate="PAV SI-o3"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Canterbury"
FT                   /note="serogroup: PAV"
FT                   /db_xref="taxon:2169986"
FT   CDS             <1..79
FT                   /codon_start=2
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /db_xref="GOA:B6RCG3"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCG3"
FT                   /protein_id="ABR26516.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             193..>788
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /db_xref="GOA:B6RCG4"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCG4"
FT                   /protein_id="ABR26517.1"
FT                   /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKTFRSEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTA"
FT   CDS             236..697
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCG5"
FT                   /protein_id="ABR26518.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT                   GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL
FT                   RQALSLLSSTPRASNQPWVATLIPSPSARPPPKPSGQRQLMGRNSRNQR"
XX
SQ   Sequence 788 BP; 235 A; 194 C; 184 G; 175 T; 0 other;
     gagtgtgaag gtgacgactc cacatctgca atcaatactg ctttccatac cggaaaacca        60
     ctcacaaaac gaatattaat taccaaatct tagctgggtt tgggataggg tttatagtta       120
     gtataccctg tacattagct ctcgcgtact ttatttacaa taaagtttca gacaccacta       180
     gagaggtggt gaatgaattc agtaggccgt agaggaccta gacgcgcaaa tcaaaatggc       240
     acaagaagga ggcgccgtag aacagttcgg ccagtggttg tggtccaacc caatcgagca       300
     ggacccagac gacgaaatgg tcgacgcaag ggaagaggag gggcaaatcc tgtatttaga       360
     ccaacaggcg ggactgaggt attcgtattc tcagttgaca accttaaagc caactcctcc       420
     ggggcaatca aattcggccc cagtctatcg caatgcccag cgctttcaga cggaatactc       480
     aagtcctacc atcgttacaa gatcacaagt atccgagttg agtttaagtc acacgcgtcc       540
     gccactacgg caggcgctat ctttattgag ctcgacaccg cgtgcaagca atcagccctg       600
     ggtagctaca ttaattcctt caccatcagc aagaccgcct ccaaaacctt ccggtcagag       660
     gcaattaatg ggaaggaatt ccaggaatca acgatagacc aattttggat gctctacaag       720
     gccaatggaa ccaccactga cacggcagga caatttatca ttacgatgag tgtcagtttg       780
     atgacggc                                                                788
//