ID   EF408157; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   EF408157;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAV isolate PAV on13-5 RNA-dependent RNA
DE   polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus PAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
DR   MD5; 5ee5fa1dab0ef4aad086ba1cb2c70945.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..789
FT                   /organism="Barley yellow dwarf virus PAV"
FT                   /host="Microlaena stipoides"
FT                   /isolate="PAV on13-5"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Coromandel"
FT                   /note="serogroup: PAV"
FT                   /db_xref="taxon:2169986"
FT   CDS             <1..80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /db_xref="GOA:B6RCB0"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCB0"
FT                   /protein_id="ABR26463.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             194..>789
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /db_xref="GOA:B6RCB1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCB1"
FT                   /protein_id="ABR26464.1"
FT                   /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGLRRRNGRR
FT                   KGRGGANPVFRPTGGAEVFVFSVDNLKANSTGTIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSVRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT                   QESTIDQFWMLYKANGTTADTAGQFIITMSVSLMTA"
FT   CDS             237..698
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCB2"
FT                   /protein_id="ABR26465.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDSDDEMVDAREEEGQILYLDQQA
FT                   GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT                   RPALSLLNSTPRANNQPWLATLIPSQSAGPRQRSSEPKRLTGRNSRNQR"
XX
SQ   Sequence 789 BP; 237 A; 192 C; 186 G; 174 T; 0 other;
     agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata ccggaaaacc        60
     actcacaaaa cgaatattaa ttatcaaatc ttagctgggt ttggaatagg gtttatagtt       120
     agtataccct gtacattagc tctcacgtac tttatttaca ataaagtttc agacaccact       180
     agagaggtgg tgaatgaatt cagtaggccg tagaggacct agacgcgcaa atcaaaatgg       240
     cacaagaagg aggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc       300
     aggactcaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc ctgtatttag       360
     accaacaggc ggggctgagg tattcgtatt ctcagtcgac aaccttaaag ccaactctac       420
     cgggacaatc aaattcggcc ccagtctatc gcaatgccca gcgctttcag acggaatact       480
     taagtcctac caccgttaca agatcacaag tgtccgtgtt gagtttaagt cacacgcgtc       540
     cgcaactacg gccggcgcta tctttattga actcgacacc gcgtgcaaac aatcagccct       600
     ggctagctac attaattcct tcacaatcag caggaccgcg tcaaaggtct tcagagccga       660
     agcgattaac gggaaggaat tccaggaatc aacgatagac cagttctgga tgctctacaa       720
     ggccaatgga accaccgctg acacggcagg acaattcatt atcacgatga gtgtcagttt       780
     gatgacggc                                                               789
//