ID EF392659; SV 1; linear; genomic RNA; STD; VRL; 6349 BP. XX AC EF392659; XX DT 28-FEB-2007 (Rel. 90, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Tobacco mosaic virus strain pet-TW readthrough protein (RdRp), DE RNA-dependent RNA polymerase (RdRp), movement protein (MP), and coat DE protein (CP) genes, complete cds. XX KW . XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6349 RA Wang H.L., Huang C.C.; RT "Studies on biological characteristics and molecular analysis of the viral RT genome of Tobacco mosaic virus isolated from Petunia hybrida Vilm"; RL Unpublished. XX RN [2] RP 1-6349 RA Wang H.L., Huang C.C.; RT ; RL Submitted (24-JAN-2007) to the INSDC. RL Biotechnology, 116, Ho-Ping 1 Rd, Kaohsiung, Taiwan 802, Taiwan XX DR MD5; 36075248dad9ce52c080eb87868f3ddc. DR EuropePMC; PMC5249172; 28107419. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6349 FT /organism="Tobacco mosaic virus" FT /host="Petunia hybrida Vilm" FT /strain="pet-TW" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:12242" FT gene 49..4899 FT /gene="RdRp" FT CDS 49..4899 FT /codon_start=1 FT /transl_except=(pos:3397..3399,aa:OTHER) FT /gene="RdRp" FT /product="readthrough protein" FT /db_xref="GOA:A3RF53" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3RF53" FT /protein_id="ABN79257.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKQVPAFQ FT KEAFDRYAEVPNEVVCHNTFQTCEHQQMQHTGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSHVNLDEINACFSRDGDKLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASSREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLMISKFSFGPKTVCQYVWDEISLAFGNAFPSVKERLLNRKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETEVMYNALSELSVLKDSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVLSNESGLTLTFEKPTEANVALALQDQEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLAGDHPESSYTKNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIITCDNWRRVAVSSESVVYSDMAKLRTL FT RKLLQNGEPHVSNAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGKQAAEMIKRRANA FT SGIVVATKDNVRTVDSFMMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYV FT YGDTQQIPYINRVSGFPYPAHFSKIEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKKSVSQEMVSGAATINPVSKPLHGKILTFTQSDKEALLSRGYSEVHTVHEVQGETYS FT DVSLVRLTPTPISIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQXQLQVDSVFRGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNFDAVTM FT RLTDISLNVKDCILDMSKSVAAPKDQINPLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIIDIENTASLVVDRFFESYLLKEKRKPNKNVSLFSKESLNRWLEKQEQTTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQSEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDILELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQHSANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAEHIKDWEHLEEFRRSLCDVAGSLNNCAYYTQLDDAV FT WEVHKTAPAGSFVYKSLVKYLSDKVLFRSLFIDGSSC" FT CDS 49..3399 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="replicase protein" FT /db_xref="GOA:A3RF54" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3RF54" FT /protein_id="ABN79256.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKQVPAFQ FT KEAFDRYAEVPNEVVCHNTFQTCEHQQMQHTGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSHVNLDEINACFSRDGDKLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASSREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLMISKFSFGPKTVCQYVWDEISLAFGNAFPSVKERLLNRKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETEVMYNALSELSVLKDSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVLSNESGLTLTFEKPTEANVALALQDQEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLAGDHPESSYTKNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIITCDNWRRVAVSSESVVYSDMAKLRTL FT RKLLQNGEPHVSNAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGKQAAEMIKRRANA FT SGIVVATKDNVRTVDSFMMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYV FT YGDTQQIPYINRVSGFPYPAHFSKIEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKKSVSQEMVSGAATINPVSKPLHGKILTFTQSDKEALLSRGYSEVHTVHEVQGETYS FT DVSLVRLTPTPISIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT gene 4883..5659 FT /gene="MP" FT CDS 4883..5659 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:A3RF55" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A3RF55" FT /protein_id="ABN79258.1" FT /translation="MALVVKGKVNINEFIDLTKTEKLLPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIEGGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDALKNVWQVLVNIRNVRMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITSVRDGGPMELSEEVVDEFMEDVPMSIRLAKFRSRTEKYKNTRS FT VPNRNHRNGRNFEEVVKKNNLIGDDSETSVAESDSF" FT gene 5662..6141 FT /gene="CP" FT CDS 5662..6141 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A3RF56" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:A3RF56" FT /protein_id="ABN79259.1" FT /translation="MSYKITTPSQFVFLSSAWADPVELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPASDFKVYRYNAVLDPLITALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNQSSFESSSGLVWSSGPAT" XX SQ Sequence 6349 BP; 1883 A; 1218 C; 1495 G; 1753 T; 0 other; aacaacaaca aacaacaaac aacattacaa acactattta caactacaat ggcatacaca 60 cagacagcta ccacatctgc tttgttagac actgtccgag gaaacaactc cttggtcaat 120 gatctagcaa agcgtcgtct atacgacaca gcggttgaag agtttaacgc tcgagaccgc 180 aggcccaaag taaatttttc gaaagtaata agcgaggaac agacgcttat tgctacacgg 240 gcatacccag aattccagat aactttctac aatacgcaaa acgccgtgca ttcgcttgca 300 ggcggtctgc gatcattaga actggaatat ctgatgatgc aagttcccta cggatcattg 360 acttacgata taggtggaaa ctttgcatca catctgttca aaggacgggc gtacgtacac 420 tgttgtatgc ccaacttgga tgtccgcgac attatgcggc acgaaggtca gaaagacagc 480 atagaactgt acctttctag gctagagcga gggaacaaac aggttcccgc gtttcagaag 540 gaagcatttg acagatacgc agaagttccg aatgaagttg tctgtcacaa tactttccaa 600 acatgtgaac atcagcaaat gcaacacact ggcagggtgt acgccatcgc gttacacagc 660 atctatgata ttcccgctga tgaattcggg gctgctcttt tgaggaaaaa cgtccatact 720 tgttacgcag cctttcactt ctctgagaat ttgcttctgg aagattctca cgttaatttg 780 gacgaaatca atgcgtgttt ttcacgcgat ggggacaaat taacattttc ctttgcatct 840 gagagtactc ttaattacag tcatagttat tctaatattc ttaagtatgt gtgcaaaact 900 tacttcccgg cctctagtag agaggtttac atgaaggagt ttttagttac cagggtcaac 960 acctggtttt gcaaattttc taggatagat acttttttat tgtacaaagg tgtagcccac 1020 aagagtgtag atagtgagca gttttacact gcaatggaag atgcatggca ttacaaaaag 1080 acactagcga tgtgcaacag tgagaggatc ctgctcgagg attcttcatc cgtcaattac 1140 tggtttccaa aaatgagaga tatggtcata gtaccacttt ttgatatatc tcttgagacc 1200 agtaagagga cacgcaagga ggtcttagta tccaaagatt ttgtgtttac tgttcttaac 1260 catatccgta catatcaagc caaagctctt acatacgcta atgtattatc cttcgtagaa 1320 tctattcgat cgagggtaat cattaacgga gtgactgcga ggtctgagtg ggatgtggat 1380 aagtctttat tacaatcttt gtccatgacg ttcttcctgc ataccaagct tgcggttcta 1440 aaagacgatc tgatgatcag caagtttagt tttggtccaa agacagtgtg ccaatatgtg 1500 tgggacgaga tttctctggc attcggaaac gcctttccct ctgtgaaaga gcggctttta 1560 aaccggaaac taattaaagt ggcgggtgat gcattagaga tcagggtgcc tgatctatat 1620 gtaactttcc acgatagatt agtaaccgaa tacaaagcct cagtagatat gcctgcgctt 1680 gacatcagga aaagaatgga agaaacggag gtgatgtaca atgcgctctc ggaactatcg 1740 gtgctcaagg attctgacaa atttgatgtc gatgtttttt cccagatgtg ccaatcactg 1800 gaggtggacc caatgactgc agcaaaagtt atagtcgcgg ttctaagcaa tgaaagcggt 1860 ctcacgctca catttgaaaa acctactgaa gcaaatgtcg cattagctct gcaagatcaa 1920 gagaaagctt cggaaggtgc gctcgtagtt acctcaagag atgttgaaga accatccatg 1980 aagggctcga tggcaagagg tgaattgcaa ttagccggtc ttgctggaga ccacccggag 2040 tcttcctata ccaagaacga ggaaatagag tcattagagc aatttcatat ggcaacggca 2100 gaatcgttaa ttcgcaaaca gatgagttcg attgtgtaca caggtcctat taaagttcaa 2160 caaatgaaaa actttataga cagcctggta gcatcactat ctgctgcggt gtcgaatctt 2220 gtcaagatcc taaaggatac agctgctata gatctcgaaa cccgtcaaaa gttcggagtt 2280 ctggatgtgg tatctaggaa gtggttgatt aaaccgactg ccaagagtca tgcgtggggc 2340 gttgttgaga ctcacgcgag gaaataccac gttgcacttc tggagtacga tgagcaggga 2400 atcataacat gcgacaactg gagaagagtt gcagttagtt ctgagtcggt cgtatattct 2460 gatatggcga agcttagaac tttgaggaaa ttgcttcaaa atggtgaacc tcatgttagt 2520 aacgcaaaag tcgttctcgt ggacggtgtc ccaggctgtg gaaaaactaa ggaaattctc 2580 tctagggtga acttcgagga ggatttgatt ttagtgccgg ggaagcaggc agcggaaatg 2640 atcaagagac gcgcaaacgc ctcgggaatc gttgtagcta caaaggataa tgtccgaacc 2700 gttgattcat ttatgatgaa ttacggtaaa ggtacgcgct gccaattcaa gaggttgttc 2760 atcgatgaag ggctgatgtt gcatactgga tgtgtgaatt tccttgtgtc tatgtctttg 2820 tgcgatatcg cgtatgtata cggagacaca cagcagattc cgtacatcaa cagagtttca 2880 ggtttcccgt acccagctca tttttcaaag attgaggtag acgaggtcga gacacgcaga 2940 actacgttgc gttgtcccgc cgatgtcact cattacctaa acaagaggta tgagggtttt 3000 gtgatgagca cttcatctgt caagaaatct gtttcacaag agatggtcag tggtgcggcc 3060 acgatcaacc cagtctcaaa gccattgcat ggtaagatct taactttcac acagtcggac 3120 aaggaggctt tactctcgag aggttactca gaagtacaca ccgttcacga agtgcaaggt 3180 gagacatatt ctgatgtatc tcttgtgagg ttgacgccta cgcccatttc tatcatagca 3240 ggggatagtc ctcatgtttt ggttgcattg tcaaggcata catgttcgct caagtactac 3300 acagttgtga tggatccctt agttagtata attagagatt tagagaaact tagctcatac 3360 ttgttagata tgtacaaggt cgatgcaggt acccaatagc aattacaggt tgactcggtg 3420 tttagaggtt cgaatctttt tgttgcggca ccgaagactg gcgatatttc cgatatgcaa 3480 ttttactatg ataagtgtct ccctgggaac agcaccatga tgaataattt tgatgctgta 3540 accatgaggt tgactgacat ttctctgaat gtcaaagatt gcatattaga tatgtctaag 3600 tctgtagctg cgccaaaaga tcaaatcaat ccactgatac caatggtacg aacggcggca 3660 gaaatgccac gccagactgg actattggaa aacttagtgg ctatgattaa aagaaacttc 3720 aatgcacctg agttgtccgg tataattgat attgaaaaca ctgcatcttt agttgtagat 3780 agattctttg aaagttattt gcttaaagaa aaaagaaaac caaataaaaa tgtgtctttg 3840 ttcagtaaag agtctctcaa tagatggttg gaaaagcagg aacagacaac gatcggccag 3900 ctcgctgatt ttgattttgt ggatttacct gctgttgatc agtacaggca tatgataaaa 3960 gcacagccta agcagaaact ggacacttcc attcaatcgg agtatccagc tctgcaaacg 4020 attgtgtacc actcaaaaaa gatcaatgca atcttcggcc cgctctttag tgagctcacg 4080 aggcagttac tggacagtgt ggattcaagc agatttttgt tctttacaag gaagacaccg 4140 gcgcagatag aggatttctt cggagatctc gacagtcatg tgccaatgga tattttggag 4200 cttgatatat caaaatatga caaatctcaa aatgaattcc actgtgcagt cgaatatgaa 4260 atctggagga ggctgggttt tgaagatttt ctaggagaag tttggaagca gggacataga 4320 aagaccactc ttaaggatta cacagcgggt attaaaacct gcatatggta tcaaagaaag 4380 agtggggatg ttacaacctt cattggaaac actgtgatta tcgccgcttg tctggcttcg 4440 atgctcccga tggaaaaaat cattaaagga gccttttgcg gtgatgacag tctgctttat 4500 tttccgaagg gatgcgagtt cccggatgta caacattccg caaatctcat gtggaacttt 4560 gaagcaaaac tgtttaaaaa acagtatggt tacttctgcg gaaggtatgt gatacatcac 4620 gatagaggct gtatagtata ttatgatcct ctaaagttaa tctcgaaact tggtgctgag 4680 cacatcaagg attgggaaca cttggaggag ttcagaagat ctctttgtga tgttgctggt 4740 tcgttgaaca attgtgcata ttacacacag ttggacgacg cagtctggga ggtccataag 4800 accgccccgg ctggttcgtt tgtttataaa agtttggtga agtatctgtc cgataaagtg 4860 ctttttagaa gcttgttcat agatggctct agttgttaaa gggaaagtga acatcaatga 4920 atttattgat ttaacaaaaa cggagaaact tttaccgtcg atgtttaccc cagtaaaaag 4980 tgttatgtgt tcaaaagtcg acaagataat ggtgcatgaa aatgaatcat tgtctgaggt 5040 caaccttcta aaaggtgtga agctcattga aggtggatat gtttgtctag ctggtctggt 5100 agttactggt gagtggaatt tgcccgacaa ttgcagaggt ggtgtgagtg tctgtttggt 5160 ggacaagagg atggaaaggg ctgatgaagc aacacttgga tcctactata ctgcagcagc 5220 aaagaagaga ttccaattca aggttgtccc taactatgca attaccactc aggacgcttt 5280 gaagaatgtc tggcaggtct tagtcaatat cagaaatgtt aggatgtctg cgggtttttg 5340 tccgctttct ttggagtttg tgtccgtatg tatagtttat agaaataaca taaaattagg 5400 tttgagagag aaaatcacga gtgtgagaga cggagggccc atggaacttt ctgaagaagt 5460 tgtagatgag ttcatggaag atgtaccaat gtcaatcaga ctcgctaagt ttcgatctcg 5520 aactgaaaaa tataaaaata ctcggtcggt gccgaacagg aaccatagaa atggcagaaa 5580 ttttgaagag gtggttaaaa agaataattt aatcggagat gattcggaga cttcagtcgc 5640 cgagtcagat tcgttttaaa tatgtcttac aaaattacga ctccatctca gttcgtgttc 5700 ttgtcatcag catgggccga tccagtagaa ttaattaatt tatgtactaa tgccttaggt 5760 aaccagttcc aaacgcaaca agctcggact gtcgttcaac gacagttcag tgaggtgtgg 5820 aaaccttcac cccaagtcac tgtcaggttt cctgcaagtg actttaaggt gtacaggtac 5880 aatgcagtac tagatcctct aatcaccgct ttgttaggag ctttcgatac tagaaataga 5940 ataatagaag tcgaaaatca ggcgaacccg acaaccgctg aaacgttgga tgctactcgt 6000 agagtagatg acgcgacagt ggcaataagg agcgcaataa ataatttagt agtagaattg 6060 atcagaggaa ccggttcata caatcagagc tctttcgaga gctcttctgg tttggtttgg 6120 tcttctggtc cggcaacttg aaatagtcaa gatgcttgat aaataacgga atgtgtccgt 6180 aaacacacgt ggtgcgtacg acaacgcata gtgtttttcc ctccacttaa atttttccct 6240 ccacttaaat cgaagggttg tgtcatggat cgcgcgggtt aaatgtatat ggttcatata 6300 catccgctga cacgtaataa agcgaggggt tcgaatcccc ccgttaccc 6349 //