ID EF375551; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC EF375551; XX DT 21-FEB-2007 (Rel. 90, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Rehmannia mosaic virus isolate Henan, complete genome. XX KW . XX OS Rehmannia mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RX DOI; 10.1007/s00705-007-0002-9. RX PUBMED; 18060589. RA Zhang Z.C., Lei C.Y., Zhang L.F., Yang X.X., Chen R., Zhang D.S.; RT "The complete nucleotide sequence of a novel Tobamovirus, Rehmannia mosaic RT virus"; RL Arch. Virol. 153(3):595-599(2008). XX RN [2] RP 1-6395 RA Zhang Z., Lei C., Zhang L., Yang X., Zhang D.; RT ; RL Submitted (19-JAN-2007) to the INSDC. RL Plant Protection, Henan Academy of Agricultural Sciences, Nong Ye Road, No. RL 1, Zhengzhou, Henan Province 450002, China XX DR MD5; 2dcbebe77e7f375fe2177e198cfbb0b9. DR EuropePMC; PMC4732330; 26823577. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01114; TMV_UPD-PK1. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Rehmannia mosaic virus" FT /host="Rehmannia glutinosa Libosch" FT /isolate="Henan" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:425279" FT CDS 72..4922 FT /codon_start=1 FT /transl_except=(pos:3420..3422,aa:OTHER) FT /product="183 kDa protein" FT /note="replicase; readthrough of stop codon generates full FT length protein" FT /db_xref="GOA:A3FG29" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3FG29" FT /protein_id="ABN59374.1" FT /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVEEFNARDRR FT PKINFSKAISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHESQKDSIELYLSRLDRGNKVVPSFQ FT KEAFDRYAESPQDVVCHNTFQTCEHQQFQNSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFAEGLLLEDSYVNLDEINACFSRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMKDMVIVPLFDISLETSKRTRSEVLVSKDFV FT YTALNHIRTYQAKALTYTNVLSFVESIRSRVIINGVTARSEWDVDKSLLPSLSMTFFLH FT TKLAVLKDDLLIRKFSLGPKTVCQHIWDEISLAFGNAFPSIKERLLNKKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETEVMYNALSELSILKESDKFDVDI FT FSQMCKNLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALHDSEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLTGDHPESSYTRNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNYIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVFDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIITCDSWRRVAVSSESVVYSDMAKLRTL FT RKMLHNGEPHVSTARVVLVDGVPGCGKTKEILSRVNFEEDLILVPGKQAAEMIKRRANA FT SGVIVATKDNVRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKRSVSQEMVSGAATINPISKPLHGKVLTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIISGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSTYLLD FT MYKVDAGTQXQLQINSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNYDAVTM FT RLTDISLNVKDCVLDMSKSVAAPKDENIPLKPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIVDIENTASLVVDKFFDSYLLKEKRKPNKNVSLFSRESLNRWLERQEQATIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEEFFEDLDSHVPMEILELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQQAANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCDVAVSLNNCAYYTQLDDAI FT WEVHKTAPAGSFVYKSLVKYLSDKVLFRSLFQDGSSC" FT CDS 72..3422 FT /codon_start=1 FT /product="126 kDa protein" FT /note="replicase" FT /db_xref="GOA:A3FG30" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A3FG30" FT /protein_id="ABN59375.1" FT /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVEEFNARDRR FT PKINFSKAISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHESQKDSIELYLSRLDRGNKVVPSFQ FT KEAFDRYAESPQDVVCHNTFQTCEHQQFQNSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFAEGLLLEDSYVNLDEINACFSRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMKDMVIVPLFDISLETSKRTRSEVLVSKDFV FT YTALNHIRTYQAKALTYTNVLSFVESIRSRVIINGVTARSEWDVDKSLLPSLSMTFFLH FT TKLAVLKDDLLIRKFSLGPKTVCQHIWDEISLAFGNAFPSIKERLLNKKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETEVMYNALSELSILKESDKFDVDI FT FSQMCKNLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALHDSEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLTGDHPESSYTRNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNYIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVFDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIITCDSWRRVAVSSESVVYSDMAKLRTL FT RKMLHNGEPHVSTARVVLVDGVPGCGKTKEILSRVNFEEDLILVPGKQAAEMIKRRANA FT SGVIVATKDNVRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKRSVSQEMVSGAATINPISKPLHGKVLTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIISGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSTYLLD FT MYKVDAGTQ" FT CDS 4906..5709 FT /codon_start=1 FT /product="30 kDa protein" FT /note="movement protein" FT /db_xref="GOA:A3FG31" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A3FG31" FT /protein_id="ABN59376.1" FT /translation="MALVVKGKVNIGEFIDLTKTEKLLPSMFTPVKSVMCSKVDKVMVH FT ENESLSEVNLLKGVKLIENGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LASYYTAAAKKRFQFKVVPNYAITTHDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITTVKDGGPMELTEEVVDEFMEDVPMSVRLAKFRSRTGKKNNVKK FT VKFEGVDRSVPKMNKGKSRNNGGVFERNIFIDNDSETNVAEPDSF" FT CDS 5712..6191 FT /codon_start=1 FT /product="17.5 kDa protein" FT /note="coat protein" FT /db_xref="GOA:A3FG32" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:A3FG32" FT /protein_id="ABN59377.1" FT /translation="MSYTIATPSQFVYLSSAWADPVELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPANDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSAFESSSGLVWTSGPAT" XX SQ Sequence 6395 BP; 1871 A; 1235 C; 1524 G; 1765 T; 0 other; gtatttttta acaacaatta ccaacaacaa caaacaatta aacaacatta caattactat 60 ttacaactac aatggcatac acacagacag ctaccacatc tgctttgctt gacaccgtcc 120 gaggtaacaa caccttggtc aatgatcttg caaagcgtcg cctgtacgac acagcggttg 180 aagagtttaa cgctcgagac cgtaggccca aaattaactt ttcaaaagcg ataagcgagg 240 aacagacgct aattgctaca cgggcgtatc cagaattcca aataacattt tacaataccc 300 aaaacgcagt gcattcactt gcaggcgggt tgcgatcctt agaattggaa tacctgatga 360 tgcaagttcc gtatgggtca ctgacttatg atattggagg gaacttcgca tcgcatctgt 420 tcaaaggacg ggcatacgtg cattgttgca tgccaaatct tgacgtccgc gacatcatgc 480 ggcacgagag ccagaaggac agcattgaac tatacctttc caggttagac agagggaata 540 aagttgttcc gagcttccag aaagaagcct tcgacagata tgcggaatct ccgcaggatg 600 ttgtctgtca caacactttc caaacttgtg agcatcagca attccagaac tctggcagag 660 tgtatgccat cgcgctacac agtatctacg atatacctgc tgatgaattt ggcgcagcac 720 ttctgaggaa aaatgttcat acatgttacg ctgctttcca cttcgccgaa ggtcttcttc 780 tagaagactc ttacgtcaac ttggacgaaa ttaacgcgtg tttttcgcgt gatggggaca 840 ggttgacttt ttcttttgca tctgagagta ctcttaatta ttcccatagc tactctaata 900 ttttaaagta tgtatgcaaa acttacttcc cagcctctaa tagagaggtt tacatgaagg 960 agtttttagt taccagggtt aacacttggt tttgcaagtt ttctagaata gatacttttt 1020 tactgtacaa aggtgtggcg cataagagtg tagatagtga gcagttttat actgcaatgg 1080 aggatgcatg gcattacaaa aagacacttg cgatgtgcaa cagcgagaga attcttctag 1140 aggattcctc ctcagtcaat tactggttcc caaaaatgaa ggatatggtc atcgttccat 1200 tgttcgacat atctcttgaa actagtaaaa ggacccgcag cgaggtcttg gtgtcaaaag 1260 attttgttta tactgctctt aaccacattc gtacatacca ggccaaagct ctaacttaca 1320 cgaatgtatt atccttcgtc gaatcaattc ggtcgagggt aatcatcaat ggggtgacgg 1380 cgaggtccga gtgggatgtt gataagtcac ttttaccaag tttatccatg acattcttct 1440 tgcatacaaa acttgcagtt cttaaagatg atctgttgat ccgcaagttc agtctcgggc 1500 caaaaactgt atgtcaacac atatgggatg agatctcatt ggcttttggc aatgcttttc 1560 cgtcgattaa agaaagactt ttgaacaaga aactgatcaa agtggccggt gacgcgttag 1620 agattagggt gcctgatctt tacgtaactt tccacgatag attggtgact gagtacaaag 1680 cctcggtgga tatgcctgct cttgacataa gaaaaaggat ggaagaaact gaagtgatgt 1740 acaacgcact ttcagagttg tcgattctaa aagagtctga caaattcgat gttgatattt 1800 tttcccagat gtgcaaaaat ttggaggtgg acccaatgac agctgcaaag gttatagtgg 1860 cagtgatgag caatgagagt ggtctcacgc tcacgtttga acaaccaaca gaagctaacg 1920 tcgcattggc tttgcatgat tcagagaagg cttcagaagg tgcacttgtg gtcacctctc 1980 gtgacgtaga agagccctcc atgaaaggtt cgatggcaag gggtgagttg caattagctg 2040 gtcttaccgg agaccatccg gagtcatcct atacaaggaa cgaggaaatt gagtcattgg 2100 agcagtttca tatggcaacg gcagagtctt taattcgcaa acagatgagc tcgattgtgt 2160 acacaggtcc gattaaagtt cagcaaatga aaaattatat cgatagcctg gtagcatcac 2220 tatctgctgc ggtgtcgaat cttgtcaaga tcctaaagga tactgctgct attgatttag 2280 aaacccgtca aaagtttgga gtcttcgacg tggtgtcgag aaagtggcta atcaaaccca 2340 ctgctaagag tcacgcgtgg ggagtggtgg aaacacacgc gaggaaatac catgttgcac 2400 ttttggagta tgatgaacaa gggataatta catgcgattc ttggaggaga gtggcggtca 2460 gttctgaatc tgttgtctat tccgatatgg ctaaactcag aactttaagg aaaatgcttc 2520 ataatggtga accacacgta agcacagcaa gagtcgtact cgtggatggc gtcccagggt 2580 gcgggaaaac caaagaaatc ctttcgagag ttaattttga agaggattta atcttagtac 2640 ctgggaagca agctgctgaa atgatcaaga gacgtgcgaa cgcctcaggt gttatcgtgg 2700 ccacgaagga caatgtaagg accgtagatt ctttcatgat gaattacgga aaggttgcgc 2760 gctgtcagtt caagaggttg tttattgacg aaggcctaat gttgcacact ggttgtgtga 2820 attttctcgt gtctatgtct ttgtgtgaaa ttgcatatgt ttatggagac acgcagcaaa 2880 ttccgtatat caacagagtt acaggttttc catacccagc ccattttgct aaactggaag 2940 tggacgaagt ggagacgcgc agaactactc tgcgttgtcc tgccgacgtc actcactatc 3000 tgaacaaaag gtatgaaggg tttgtgatga gtacatcgtc tgtcaagaga tccgtatccc 3060 aagagatggt aagtggtgcg gcgaccatca acccaatctc caaacctttg cacggtaagg 3120 tcttgacctt cactcagtcc gacaaggaag ctctgctttc gagagggtac tctgacgtac 3180 atactgtgca tgaggtgcaa ggagagacgt atagtgatgt gtctcttgtg cggctgaccc 3240 ctactcctgt ctcgatcatc tctggtgaca gtcctcatgt tttggttgct ctttcgaggc 3300 atacttgttc acttaagtac tacactgttg tgatggatcc cttagttagt attattagag 3360 atttagaaaa acttagcact tacttgttgg acatgtacaa agttgatgca ggtacgcaat 3420 agcaattaca gataaactcg gtgtttaaag gttctaatct ttttgtagct gctccgaaga 3480 ctggcgatat ttccgatatg caattttact atgacaagtg tctccctggg aatagcacca 3540 tgatgaacaa ttatgatgct gtgaccatga ggctgactga catctcattg aatgtcaaag 3600 attgcgtatt ggacatgtcc aagtctgttg cagctccaaa ggatgaaaat attccactga 3660 aaccgatggt acgaacggcc gcagagatgc cgcgccagac tggactgttg gaaaacttgg 3720 tggcaatgat aaaaagaaac tttaacgcgc ccgagttgtc aggaattgta gatattgaga 3780 atactgcatc tttggttgta gataagtttt ttgatagtta cttacttaaa gaaaaaagaa 3840 aaccaaataa aaatgtttct ttgtttagta gagagtctct caatagatgg ttagaaagac 3900 aagagcaagc gactattggc caactcgcag atttcgattt tgtcgacttg cccgcggttg 3960 atcagtatag gcacatgatc aaagcacaac ccaagcagaa actggacaca tccattcaaa 4020 cggaatatcc tgctctgcaa acgattgtgt accactcaaa aaagattaac gcgatttttg 4080 gccccttatt cagtgaatta actagacagt tgctcgacag tgtagattca agcagatttt 4140 tgttcttcac acgaaaaacg ccggcacaaa tcgaggaatt ctttgaagac cttgatagtc 4200 atgtgccgat ggaaattttg gagcttgata tctcgaagta cgataaatct caaaatgaat 4260 ttcattgcgc tgtagagtac gaaatctggc ggagactggg gttcgaagat ttcctgggtg 4320 aagtttggaa acaagggcat agaaagacca ccctcaagga ctataccgca ggaattaaaa 4380 cctgtatatg gtaccagagg aagagcggtg acgttaccac gttcattggg aacacagtga 4440 tcatcgctgc atgcttagct tcaatgcttc ccatggaaaa aataatcaaa ggcgccttct 4500 gcggggacga cagtttgctc tattttccga aagggtgtga gttccctgat gtacagcaag 4560 cggcaaatct gatgtggaat tttgaagcaa aactgttcaa aaagcaatac ggatactttt 4620 gcgggaggta cgttatacat cacgacagag ggtgtattgt ctattacgac cctctaaagt 4680 tgatctccaa gctcggtgct aaacacatca aggattggga tcacttagag gaattcagga 4740 gatccctttg tgatgttgct gtttcgttga ataattgcgc gtactacacg caattggacg 4800 acgcgatctg ggaggttcat aaaaccgccc cggcgggttc gtttgtttat aaaagtttgg 4860 taaagtattt gtcagataag gttcttttta gaagtttatt tcaagatggc tctagttgtt 4920 aaaggaaagg tgaatatcgg tgagtttatt gacttgacga aaacggagaa attgttaccg 4980 tcaatgttca caccagttaa aagtgttatg tgctccaagg ttgataaggt aatggtacat 5040 gaaaatgagt cattatccga agttaacctt ctcaaaggtg tgaagctcat cgaaaatgga 5100 tatgtttgtc tcgctggtct agtggttaca ggtgagtgga atctgcccga caattgtaga 5160 ggtggtgtca gtgtttgtct ggtggacaaa agaatggaaa gagcagatga ggctactttg 5220 gcatcttact acaccgctgc agcaaagaaa aggtttcagt tcaaggttgt cccgaactat 5280 gcaataacca ctcatgatgc gatgaagaac gtgtggcaag ttctagttaa tattagaaat 5340 gttaagatgt cggcgggttt ctgtccgctt tcgttggagt ttgtgtctgt atgtattgtt 5400 tatagaaata acataaaatt gggtttgagg gagaaaatca caactgtgaa agatggagga 5460 cccatggaac tcaccgaaga agtggtagac gagttcatgg aagacgttcc aatgtctgtc 5520 agacttgcga agtttcgatc tcgaaccgga aaaaagaata atgtaaagaa ggttaaattt 5580 gaaggtgtcg atcggtctgt gccgaagatg aataaaggaa agagtagaaa taatggaggt 5640 gtatttgaaa gaaatatttt tatcgataac gattcggaga ctaacgtcgc cgaaccagac 5700 tcgttttaag tatgtcttat acaattgcaa ctccatccca gttcgtgtat ttgtcatctg 5760 catgggccga cccagtagaa ttaattaatt tatgtactaa tgcgttaggt aatcagttcc 5820 aaacacaaca agcgagaact gtcgtccaac gacagtttag cgaagtgtgg aaaccgtcgc 5880 cacaggtcac tgtcaggttt cctgccaatg actttaaagt ttataggtac aatgcggtgc 5940 tggatcctct agtaactgca ctgttaggtg cttttgatac taggaataga ataatagagg 6000 ttgaaaatca ggcgaaccct acaactgctg aaacgttaga tgctactcgt agagtagatg 6060 acgcgacagt agctataagg agcgcgataa ataatttagt cgtagaattg atccgaggaa 6120 ctggatcata caataggagt gctttcgaaa gctcttcagg tttggtctgg acttctggtc 6180 ccgcaacttg agataatcat gttgcgtaat aaataacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 ttcgcgcggg tcaagtgtat atggtgcata tacatccgta ggcacgtaat aaagcgaggg 6360 attcgaattc ccccgttacc cccggtaggg gccca 6395 //